BAC Information

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BAC

Clone NameB6Ng01-069E19
Chromosome3 (Build37)1 (Build37)
Map Location 41,059,662 - 41,059,73730,180,067 - 30,181,236
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069E19.bB6Ng01-069E19.g
ACCDH887650DH887651
length9561,083
definitionDH887650|Mus musculus domesticus DNA, BAC clone: B6Ng01-069E19, 5' end.DH887651|Mus musculus domesticus DNA, BAC clone: B6Ng01-069E19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,662 - 41,059,737)(30,180,067 - 30,181,236)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttggtt
ttctggagtctaccttcttgagttcttatggaaagatctcccatgctcat
ggattggcaggattaacattgtaaaaatggctatcttgccaaaagcaatc
tacagattcaatgcaatccccatcaaaattccaactcaattcttcaatga
attagaaagggcaatctgcaaattcatctggaataacaaaaaaacctagg
atagcaaaaattcttctcaaggataaaagaacctcttttggaatcaccat
gtctgatgtaaagctttactacagagcaattgtgattaaaaactgcgtgg
tgctggtatagtgacagacaagtagaccattggaatagaattgaaaaccg
cgaaatgaacccacacacctatggtcacttgatcttcgacaagggagcta
aaaccatccagtggaagaaagacaacattttcaacaaatggtgctggcac
agctggtttttatcatgtagaagaatgtgaatcgatctgtccctattgcc
ttgtactaaggtcaaacctaagacatatctctttagcagtgttctcctgt
atttctttaagtgagttattgaagtccttcttgatgtcctctaccatcat
catgagatatgcttttaaatccaggtctagctttttgggtgtgttggggt
gcccaggactggctgaggtgggagtgctgggttctgatgatggtgagtgg
tcttggtttttgttattaagattcttgcatttgtctttcaccatctggta
atctctggagttagttgttatagttgtctctggttagagatttttcctcc
agtgattctgttagcctctatcagcagacatggggagactagatctctct
tgagtttcagtggttagagcactctctgcaggcaagctcttctcttgctg
ggaagg
gaattctatggaatcttctggaaggatgtagaacatggaagtataaaaag
ggtagggtgtataatctttgtatgacaagattatcttaagtgaaatgaca
tcttttagcatggttacttaaacaagttacttgaaaaatcaatagtatta
ttttacttgcagctacaaattgattttcttcatgggcttggatggacaaa
aagatctccacttattgatttcataacttttatgcagctagcaaaaatct
taaacttgtacagaaatcagagtgagactgacatagaatttatatgaaat
tcttcagtgcattagttttggtaaaacctggtaaggacatcaggctagat
ttaaggcctaagctgatctacttcaggatactggtagtacaataatccat
tttatttataaataacagcatgaatagtagcactttttaaatatctgaca
gatttgcaatgaacatgggtgaacaacctgtttagtatgtgaaacaaaga
accataaaagaccaaaggatatccagctttgtgaaaaaggattctacctg
ttctagtttaattgagttatgataaacaccatgagaaaagtaaattggag
aagaaagggagtattaggtttgtgctttcatttagttttatattactgag
caaaattaaggcacaaattcctggcagcaatctggaggcagaaactatta
gcaaaggccatggggtacgccagatttctagatgttttctttgggcaggt
acaggtcccattcttcttcagaacagcctatctacatagagatgatattg
tgcacagtgtccaggccctttccacatcagtcagcatcaaaaatgcacca
tgtaccaatagaccaactgatagagtcatttcccagatgagatttctctt
tccatgtctgtgtcaagctttgtgtcagccaacacaaaaaatgatcctca
gtggatcattgatatggtagtaaataactgaatgaaataagccaggccag
aaagatgctatatatactcattaatttagaatctaaatttcatatcaaga
ggtagataaaaagtagtccttgaataaggtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059662_41059737
seq2: B6Ng01-069E19.b_45_120 (reverse)

seq1  AAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAA  50
      |||||||||||||||| || ||||||||| ||||||||||||||||||||
seq2  AAGAACTCAAGAAGGTAGACTCCAGAAAACCAAATAACCCCATTAAAAAA  50

seq1  TGGGGCTCAGAGCTAAACAAAGAATT  76
      ||||||||||||||||||||||||||
seq2  TGGGGCTCAGAGCTAAACAAAGAATT  76

seq1: chr1_30180067_30181236
seq2: B6Ng01-069E19.g_68_1150 (reverse)

seq1  CTCACCTTATTTGCATACATTTTTATATCTTTTGTGCTGTAGCTAGCAAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTATCCCTACCTCAACCTTAATTCAAGGAACTAACATTTTTATCTTTAC  100
                 ||| ||||| |||||||| ||||   ||||||||  |||
seq2  -----------CTC-ACCTT-ATTCAAGG-ACTA--CTTTTTATC--TAC  32

seq1  CTCTATGTATATGAAATTTTTAGATTCTAAATATAAATGAGGTAATAT-T  149
      |||| || ||||||||  ||||||||||||  || ||||||    ||| |
seq2  CTCT-TG-ATATGAAA--TTTAGATTCTAA--ATTAATGAG----TATAT  72

seq1  ATAGCATTCTTTCTGGGCCTGGCTTATTTCATTCAGTTTATTTACTACCA  199
      |||||| ||||||| ||||||||||||||||||||| |||||||||||||
seq2  ATAGCA-TCTTTCT-GGCCTGGCTTATTTCATTCAG-TTATTTACTACCA  119

seq1  TAATCAATGATCCACTGAGGATCATTTTTTTGTTGTTGGCCTGACACAAA  249
      | ||||||||||||||||||||||||||||   |||||| ||||||||||
seq2  T-ATCAATGATCCACTGAGGATCATTTTTT--GTGTTGG-CTGACACAAA  165

seq1  GCTTGACACAGACATGGAAAGAGGAAATCTCATCTGGGAAATTGACTCTA  299
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  GCTTGACACAGACATGGAAAGA-GAAATCTCATCTGGGAAA-TGACTCTA  213

seq1  TCAGTTGGTCTATTGGTACATGGTGCATTTTTGATTGCTGACTGATGTGG  349
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAGTTGGTCTATTGGTACATGGTGCATTTTTGA-TGCTGACTGATGTGG  262

seq1  GAAGGGCCTGGACACTGTGCACAATATCATCTCTATGTAGATAGGCTGTT  399
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCCTGGACACTGTGCACAATATCATCTCTATGTAGATAGGCTGTT  312

seq1  CTGAAGAAGAATGGGACCTGTACCTGCCCAAAGAAAACATCTAGAAATCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAGAATGGGACCTGTACCTGCCCAAAGAAAACATCTAGAAATCT  362

seq1  GGCGTACCCCATGGCCTTTGCTAATAGTTTCTGCCTCCAGATTGCTGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTACCCCATGGCCTTTGCTAATAGTTTCTGCCTCCAGATTGCTGCCA  412

seq1  GGAATTTGTGCCTTAATTTTGCTCAGTAATATAAAACTAAATGAAAGCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTGTGCCTTAATTTTGCTCAGTAATATAAAACTAAATGAAAGCAC  462

seq1  AAACCTAATACTCCCTTTCTTCTCCAATTTACTTTTCTCATGGTGTTTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAATACTCCCTTTCTTCTCCAATTTACTTTTCTCATGGTGTTTAT  512

seq1  CATAACTCAATTAAACTAGAACAGGTAGAATCCTTTTTCACAAAGCTGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTCAATTAAACTAGAACAGGTAGAATCCTTTTTCACAAAGCTGGA  562

seq1  TATCCTTTGGTCTTTTATGGTTCTTTGTTTCACATACTAAACAGGTTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTTGGTCTTTTATGGTTCTTTGTTTCACATACTAAACAGGTTGTT  612

seq1  CACCCATGTTCATTGCAAATCTGTCAGATATTTAAAAAGTGCTACTATTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATGTTCATTGCAAATCTGTCAGATATTTAAAAAGTGCTACTATTC  662

seq1  ATGCTGTTATTTATAAATAAAATGGATTATTGTACTACCAGTATCCTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTTATTTATAAATAAAATGGATTATTGTACTACCAGTATCCTGAA  712

seq1  GTAGATCAGCTTAGGCCTTAAATCTAGCCTGATGTCCTTACCAGGTTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCAGCTTAGGCCTTAAATCTAGCCTGATGTCCTTACCAGGTTTTA  762

seq1  CCAAAACTAATGCACTGAAGAATTTCATATAAATTCTATGTCAGTCTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTAATGCACTGAAGAATTTCATATAAATTCTATGTCAGTCTCAC  812

seq1  TCTGATTTCTGTACAAGTTTAAGATTTTTGCTAGCTGCATAAAAGTTATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTCTGTACAAGTTTAAGATTTTTGCTAGCTGCATAAAAGTTATG  862

seq1  AAATCAATAAGTGGAGATCTTTTTGTCCATCCAAGCCCATGAAGAAAATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATAAGTGGAGATCTTTTTGTCCATCCAAGCCCATGAAGAAAATC  912

seq1  AATTTGTAGCTGCAAGTAAAATAATACTATTGATTTTTCAAGTAACTTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTAGCTGCAAGTAAAATAATACTATTGATTTTTCAAGTAACTTGT  962

seq1  TTAAGTAACCATGCTAAAAGATGTCATTTCACTTAAGATAATCTTGTCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAACCATGCTAAAAGATGTCATTTCACTTAAGATAATCTTGTCAT  1012

seq1  ACAAAGATTATACACCCTACCCTTTTTATACTTCCATGTTCTACATCCTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATTATACACCCTACCCTTTTTATACTTCCATGTTCTACATCCTT  1062

seq1  CCAGAAGATTCCATAGAATTC  1170
      |||||||||||||||||||||
seq2  CCAGAAGATTCCATAGAATTC  1083