BAC Information

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BAC

Clone NameB6Ng01-069L13
Chromosome1 (Build37)
Map Location 6,350,936 - 6,352,020
singlet/doubletsinglet
Overlap geneEG620393
Upstream geneOprk1, Npbwr1, 4732440D04Rik, Rb1cc1
Downstream geneLOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069L13.bB6Ng01-069L13.g
ACCDH887943DH887944
length1,2531,085
definitionDH887943|Mus musculus domesticus DNA, BAC clone: B6Ng01-069L13, 5' end.DH887944|Mus musculus domesticus DNA, BAC clone: B6Ng01-069L13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctctgaggaaacagactgggaggaagaagcagcccattacca
gccagctaattggtcaagaaaaaagccaaaagcggctggcgaaggccagt
ttgctgattggcctcagggcagtcggcttcaaggtccgccctatgcggag
tccccgccctgcgtagtgcgtcagcaatgcgcagagagatgcgcagagag
gcagtgcgcagagaggcagtgcgcagactcattcattcccagagaggaac
aaaggaaaatacaacaggcatatccttttctacttaaaactttaagtcag
tggggtttacagatagccacagaaaaggtccaaatttctgatacaggaca
attcttgggctctgtggtgtccccagataagattgtgccccaaaaggtag
agataagaagagatcacctccataccttaaatgattttcaaaagctgttg
ggagatattaattggcttagaccttttttaaagattccttccgctgagtt
aaggcctttgtttagtattttagaaggagatcctcatatctcctccccta
ggactcttactctagctgctaaccaggccttacaaaaggtggaaaaagcc
ttacagaatacacaattacaacgtattgaggattcgcagcctttcagttt
gtgtgtctttaagacagcacaattgccaactgcagttttgtggcagaatg
ggccattgttgtggatccatccaaacgtatccccagctaaaataatagat
tggtatcctgatgcaattgcacagcttgcccttaaaggtctaaaagcagc
aatcacccactttgggcaaagtccatatcttttaattgtaccttataccg
ctgcacaggttcaaaccttggcagccacatctaatgattgggcagtttta
gttacctccttttcaggaaaaatagataaccattatccaaaacatccaat
ctacagtttgcccaaaatcaatctgtgttttccacaataacagtaagaaa
cccacttaaaatgggatgtgtatatactgatggatcaaaactggcatagg
tgcctatgtgctaatggtaagtggtatccaacaattaatgaaaatcacct
cagtggagaatgttagtgtcttagagtttaaacttttagacctaaattgg
ccgatcgttatgggaaatgcaaatcttatgctggagataggctcggaggt
ccaattccgtaagaaacaacatgattggttatctaaagagaactcctggt
tag
gaattccagagaaaaaaaaaaaaaaaagaaagaattccagaacttaagcc
taaaaacacaggcagggacacaagagacttctgctactctcacacgatta
cccagtgggagttccaggacattttaaaccacccctgaactcgttttttt
tttttcaccagctgaggctgggtaacattacaggttctactttagactaa
cagagggcaactgcaggcttgctcaacatggatgacagtcgttggcctcg
aggacttgggagacgcttcctcctggatgaattatgaccacttaccgctc
ctatgaaaacttcccgatgggaacttgtcttctctgcattcatgtccttg
cttttccttgatccatgtcaagagttccattcatagactcagatgtaacc
agtcaccctctctctccccatgtaaacaagatacagtaatcaaaagatga
ggccacctcaaacagctgtagaaagcaataaattttgagggtgagtcata
gctcattttctttgaggctatacggtttttacatcttctttgtcatttgg
gaggagaattgctggttgaatctaggcccgcatgtgttctaggatatagt
tctaccactgaactatatcccccaattttctccaatgtctttaaccagag
aaatcgcattaaactaaaataaaacaggtaaaattcatgtgttaccataa
gtgattttgcaatttgatgtttttctcacgttccgtttgtattctaaagc
aacactagtacctgagataaatagttttgttagcaataattttcaagtca
aaggggtataataatgtgaaagcatcaaggtatgactcccccatactgaa
tgcccctactgccttatctggagagcttccagaaaataggtttgggtcta
tatccccttactagccttccatgtctttctgtcacttccctctgcttctc
tccctgcctggctcactcagtctgtgtatgtgcacgcccctactctcttc
tccctcagacatgtagtgaaggacgaaccacttgttcctccttatcatct
tcttgatctcagttctctgcagtatgtacctggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_6350936_6352020
seq2: B6Ng01-069L13.g_68_1152 (reverse)

seq1  TCCCAGGTACATACCTTGCAGAGAACTGAGATCAAGAAGATGGATAGGAG  50
      ||||||||||||||  ||||||||||||||||||||||||||   |||||
seq2  TCCCAGGTACATAC--TGCAGAGAACTGAGATCAAGAAGATGATAAGGAG  48

seq1  G-ACAAGTGTGTCTGTCCTTCACTACATGTCTGAGGGAG-AGAGAGTAGG  98
      | ||||||| ||  ||||||||||||||||||||||||| ||||||||||
seq2  GAACAAGTG-GTTCGTCCTTCACTACATGTCTGAGGGAGAAGAGAGTAGG  97

seq1  GGCGTGCACATACACAGACTGAGTGAGCCAGGCAGGGAGAGAAGCAGAGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGCACATACACAGACTGAGTGAGCCAGGCAGGGAGAGAAGCAGAGG  147

seq1  GAAGTGACAGAAAGACATGGAAGGCTAGTAAGGGGATATAGA-CCAAACC  197
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAAGTGACAGAAAGACATGGAAGGCTAGTAAGGGGATATAGACCCAAACC  197

seq1  TATTTATCTGGAAGCTCTCCAGATAAGGCAGTAGGGGCATTCAGTATGGG  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTT-TCTGGAAGCTCTCCAGATAAGGCAGTAGGGGCATTCAGTATGGG  246

seq1  GGAGTCATACCTTGATGCTTTCACATTATTATA-CCCTTTGACTTGAAAA  296
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGAGTCATACCTTGATGCTTTCACATTATTATACCCCTTTGACTTGAAAA  296

seq1  TTATTGCTAACAAAACTATTTATCTCAGGTACTAGTGTTGCTTTAGAATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCTAACAAAACTATTTATCTCAGGTACTAGTGTTGCTTTAGAATA  346

seq1  CAAACGGAACGTGAGAAAAACATCAAATTGCAAAATCACTTATGGTAACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGGAACGTGAGAAAAACATCAAATTGCAAAATCACTTATGGTAACA  396

seq1  CATGAATTTTACCTGTTTTATTTTAGTTTAATGCGATTTCTCTGGTTAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTTTACCTGTTTTATTTTAGTTTAATGCGATTTCTCTGGTTAAA  446

seq1  GACATTGGAGAAAATTGGGGGATATAGTTCAGTGGTAGAACTATATCCTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGGAGAAAATTGGGGGATATAGTTCAGTGGTAGAACTATATCCTA  496

seq1  GAACACATGCGGGCCTAGATTCAACCAGCAATTCTCCTCCCAAATGACAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACATGCGGGCCTAGATTCAACCAGCAATTCTCCTCCCAAATGACAA  546

seq1  AGAAGATGTAAAAACCGTATAGCCTCAAAGAAAATGAGCTATGACTCACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGTAAAAACCGTATAGCCTCAAAGAAAATGAGCTATGACTCACC  596

seq1  CTCAAAATTTATTGCTTTCTACAGCTGTTTGAGGTGGCCTCATCTTTTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATTTATTGCTTTCTACAGCTGTTTGAGGTGGCCTCATCTTTTGA  646

seq1  TTACTGTATCTTGTTTACATGGGGAGAGAGAGGGTGACTGGTTACATCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTATCTTGTTTACATGGGGAGAGAGAGGGTGACTGGTTACATCTG  696

seq1  AGTCTATGAATGGAACTCTTGACATGGATCAAGGAAAAGCAAGGACATGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATGAATGGAACTCTTGACATGGATCAAGGAAAAGCAAGGACATGA  746

seq1  ATGCAGAGAAGACAAGTTCCCATCGGGAAGTTTTCATAGGAGCGGTAAGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGAAGACAAGTTCCCATCGGGAAGTTTTCATAGGAGCGGTAAGT  796

seq1  GGTCATAATTCATCCAGGAGGAAGCGTCTCCCAAGTCCTCGAGGCCAACG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAATTCATCCAGGAGGAAGCGTCTCCCAAGTCCTCGAGGCCAACG  846

seq1  ACTGTCATCCATGTTGAGCAAGCCTGCAGTTGCCCTCTGTTAGTCTAAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATCCATGTTGAGCAAGCCTGCAGTTGCCCTCTGTTAGTCTAAAG  896

seq1  TAGAACCTGTAATGTTACCCAGCCTCAGCTGGTGAAAAAAAAAAAACGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTGTAATGTTACCCAGCCTCAGCTGGTGAAAAAAAAAAAACGAG  946

seq1  TTCAGGGGTGGTTTAAAATGTCCTGGAACTCCCACTGGGTAATCGTGTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGTGGTTTAAAATGTCCTGGAACTCCCACTGGGTAATCGTGTGA  996

seq1  GAGTAGCAGAAGTCTCTTGTGTCCCTGCCTGTGTTTTTAGGCTTAAGTTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCAGAAGTCTCTTGTGTCCCTGCCTGTGTTTTTAGGCTTAAGTTC  1046

seq1  TGGAATTCTTTCTTTTTTTTTTTTTTTTCTCTGGAATTC  1085
      |||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCTTTCTTTTTTTTTTTTTTTTCTCTGGAATTC  1085