BAC Information

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BAC

Clone NameB6Ng01-069M23
Chromosome1 (Build37)
Map Location 187,822,735 - 187,939,881
singlet/doubletdoublet
Overlap geneLyplal1
Upstream geneMark1, Iars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785
Downstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069M23.bB6Ng01-069M23.g
ACCDH888003DH888004
length1,1631,081
definitionDH888003|Mus musculus domesticus DNA, BAC clone: B6Ng01-069M23, 5' end.DH888004|Mus musculus domesticus DNA, BAC clone: B6Ng01-069M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(187,822,735 - 187,823,921)(187,938,793 - 187,939,881)
sequence
gaattctgggaagcaaaggcacatgattttattaaggggataattatatg
ccaatctctttagtcaggcttactaaatgcaccttactaagggctggcct
attggccatgtaattggttggtccaactggattaactcttggggcatgtc
tctactgaaagggagattccattccttttgctaggagacaatggctttct
ccagtgtgcctttatggcaactgtaaccctcttcttcagttagcaatgaa
gagaagagccaaaggcaccatgtaggaggctcttatgggccacatctagc
agagctcacctacacacagacagctgggagaaggagtcaactatattcct
agaagatgaagaaatgggcctagtgatcatagagtttctaccattgattt
aaagcctacctggaattatcattttaaagttagcctttaagctagtttat
gatcccattatatatcaattcactgcttctgagagataggtgaacaaaat
tgcattactagctcacccactaatataaaatccattaaccttggattcta
gattgttctctagggagacagagacatcatgagatttattactcattttg
ttactgattgacaactaattcgttagtttttaatttgctagctctataaa
gaaatggagccagaagatgatggatggatgttatctgtattcacaatcct
gaggtgacaaggagaggtgatagcatatctttactctgagttcaataggc
tgagttctgagaaagaatttctattttagttcttatagaagagaggaaaa
ttctaatgttccatcttgatagcagtcaaacaaaaaattatcactttccc
agtttgcgttaataagacctctaactggatcttccttctgagcccagcgg
gggccaccaagggctccagagtgctctccacaccgcaggacctcgggatc
accttgggattactggtgagtggaacacaacatcagctccaagacttttc
aaggtcttgtgccagcaggaacaggatggaggaaccctgcctgactgagg
ctgaattcattcaggtgggggcagccgcatcttctgcatgaaccgcaagg
ctctagggaccaaggactctcccgcccaggcccttagacatcaggactcc
tgatactgagagc
gaattcagtgatgagcatccaaaattcccacatagtaattccttctcgta
attaattcagtgtctttagaaagaactagagtttgttcttttccccccat
ctggaccaccttgcttagtgcttcctatttttctatttcaaattactgac
atttttataacctataatgtatgtctgaaaacagagtcacctattctgta
tgtattttattcatttgtgtgtattgtctgtgtgtgtgtgtgcgcgcgca
cgcgcatgcgtgtgtaaaacttgcctttgtacattggaaaaaaattcatc
taaataattcttccagatgttcaggtatattattcttatataattggatc
tccattgatgtataaaaagatcttttaggagttggcctgttctgctaatt
gttattattaattaattggaacttggagtcacctgagaaaagtgagtctc
agctgagaaattgcccagttcaggttggcctgtggcagtgtctatggtga
atggtctcagttgttggttgattaggaggctcctgcctgctgtggccatt
gcttctcctgtgcatgtgggtctgggttgtataaacctggttgagcatga
gccatggggacaaaccagtatcagctgtgctctgtgtttcctgcctctgc
tcctacataagttcctggcctccctgggtgaatatgccaccaggtgtatt
tgaacctttttctacttccaaactttgaggggaaacggcgactcttacag
tgaatgatgtaaatggtcttctctgtggctggcttcagcctcccacacgg
gtccctaaactccattatttccttcacggacatccatcatacctgtgatt
cctaagtctgtgacccgcactgacctttaagctgataaagctgttctgtg
tatggttgctgtctttctccctttatatgtctttatgaagtgctcagtca
gatctgctgaagttacaagaaactccaggaagtgggagcttgtcagtaga
cactggcttcttccacctctcttttatccacccttctctcagtgacatgt
aaagacttgggttttttctggtctcatgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_187822735_187823921
seq2: B6Ng01-069M23.b_48_1210

seq1  GAATTCTGGGAAGCAAAGGCACATGATTTTATTAAGGGGATAATTATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAAGCAAAGGCACATGATTTTATTAAGGGGATAATTATATG  50

seq1  CCAATCTCTTTAGTCAGGCTTACTAAATGCACCTTACTAAGGGCTGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTCTTTAGTCAGGCTTACTAAATGCACCTTACTAAGGGCTGGCCT  100

seq1  ATTGGCCATGTAATTGGTTGGTCCAACTGGATTAACTCTTGGGGCATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCATGTAATTGGTTGGTCCAACTGGATTAACTCTTGGGGCATGTC  150

seq1  TCTACTGAAAGGGAGATTCCATTCCTTTTGCTAGGAGACAATGGCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGAAAGGGAGATTCCATTCCTTTTGCTAGGAGACAATGGCTTTCT  200

seq1  CCAGTGTGCCTTTATGGCAACTGTAACCCTCTTCTTCAGTTAGCAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGCCTTTATGGCAACTGTAACCCTCTTCTTCAGTTAGCAATGAA  250

seq1  GAGAAGAGCCAAAGGCACCATGTAGGAGGCTCTTATGGGCCACATCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGCCAAAGGCACCATGTAGGAGGCTCTTATGGGCCACATCTAGC  300

seq1  AGAGCTCACCTACACACAGACAGCTGGGAGAAGGAGTCAACTATATTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCACCTACACACAGACAGCTGGGAGAAGGAGTCAACTATATTCCT  350

seq1  AGAAGATGAAGAAATGGGCCTAGTGATCATAGAGTTTCTACCATTGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGAAGAAATGGGCCTAGTGATCATAGAGTTTCTACCATTGATTT  400

seq1  AAAGCCTACCTGGAATTATCATTTTAAAGTTAGCCTTTAAGCTAGTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTACCTGGAATTATCATTTTAAAGTTAGCCTTTAAGCTAGTTTAT  450

seq1  GATCCCATTATATATCAATTCACTGCTTCTGAGAGATAGGTGAACAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCATTATATATCAATTCACTGCTTCTGAGAGATAGGTGAACAAAAT  500

seq1  TGCATTACTAGCTCACCCACTAATATAAAATCCATTAACCTTGGATTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTACTAGCTCACCCACTAATATAAAATCCATTAACCTTGGATTCTA  550

seq1  GATTGTTCTCTAGGGAGACAGAGACATCATGAGATTTATTACTCATTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTCTCTAGGGAGACAGAGACATCATGAGATTTATTACTCATTTTG  600

seq1  TTACTGATTGACAACTAATTCGTTAGTTTTTAATTTGCTAGCTCTATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGATTGACAACTAATTCGTTAGTTTTTAATTTGCTAGCTCTATAAA  650

seq1  GAAATGGAGCCAGAAGATGATGGATGGATGTTATCTGTATTCACAATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGAGCCAGAAGATGATGGATGGATGTTATCTGTATTCACAATCCT  700

seq1  GAGGTGACAAGGAGAGGTGATAGCATATCTTTACTCTGAGTTCAATAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACAAGGAGAGGTGATAGCATATCTTTACTCTGAGTTCAATAGGC  750

seq1  TGAGTTCTGAGAAAGAATTTCTATTTTAGTTCTTATAGAAGAGAGGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTGAGAAAGAATTTCTATTTTAGTTCTTATAGAAGAGAGGAAAA  800

seq1  TTCTAATGTTCCATCTTGATAGCAGTCAAACAAAAAAATTATCACTTTCC  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCTAATGTTCCATCTTGATAGCAGTCAAAC-AAAAAATTATCACTTTCC  849

seq1  CAGTTTGCGTTAATAAGACCTCTAACTGGATCTTCCTTCTGAGCCCAGCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGCGTTAATAAGACCTCTAACTGGATCTTCCTTCTGAGCCCAGCG  899

seq1  GGGGCCACCAAGGGCTCCAGAGTGCTCTCCACACCGCAGGACCTCGGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCACCAAGGGCTCCAGAGTGCTCTCCACACCGCAGGACCTCGGGAT  949

seq1  CACCTTGGGATTACTGGTGAGTGGAACACAACATCAGCTCCAAAGACTCT  1000
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  CACCTTGGGATTACTGGTGAGTGGAACACAACATCAGCTCC-AAGACTTT  998

seq1  CCAAGGGTCTTGTGCCAGCAGGAACAGGGATGGAGGAACCCTGCCTGACC  1050
       ||| ||||||||||||||||||||| ||||||||||||||||||||| |
seq2  TCAA-GGTCTTGTGCCAGCAGGAACA-GGATGGAGGAACCCTGCCTGA-C  1045

seq1  TGAGGCTGAAATCCATTCAGGTTGGGGCCAGCCCCGCCATCTTCTGCATG  1100
      |||||||| ||| |||||||| ||||| |||||    |||||||||||||
seq2  TGAGGCTG-AATTCATTCAGG-TGGGGGCAGCC---GCATCTTCTGCATG  1090

seq1  AACCCGGCCAAGGGCATCTAGGGCACCAGAGGACTCTCCACGCCACAGGC  1150
      ||||    |||||   ||||||| |||| |||||||||| |||| |||||
seq2  AACC---GCAAGG--CTCTAGGG-ACCA-AGGACTCTCC-CGCC-CAGGC  1131

seq1  CCCTAGCACACTCAGGACCTCCTGATCACCTGAGAGC  1187
      || ||| ||| |||||| ||||||||   ||||||||
seq2  CCTTAG-ACA-TCAGGA-CTCCTGAT--ACTGAGAGC  1163

seq1: chr1_187938793_187939881
seq2: B6Ng01-069M23.g_69_1149 (reverse)

seq1  CTGCATGGAGACAGGAAAAGAACCCAAGTGCCTTACATGTCACTGAGAGG  50
      |||||| |||||  ||||| ||||||||| | ||||||||||||||||| 
seq2  CTGCAT-GAGACCAGAAAA-AACCCAAGT-CTTTACATGTCACTGAGAGA  47

seq1  AGGGTGGAT-AAAGAGAGGTGG-AGAAGGCAGTGTCTACTGGACAAGGCT  98
      ||||||||| |||||||||||| ||||| ||||||||||| ||||| |||
seq2  AGGGTGGATAAAAGAGAGGTGGAAGAAGCCAGTGTCTACT-GACAA-GCT  95

seq1  CCCACTTCCTGGGGTTTCTTGTAACTTCAGCAAGATCTGACTGAGCACCT  148
      |||||||||||| |||||||||||||||||| ||||||||||||||| ||
seq2  CCCACTTCCTGGAGTTTCTTGTAACTTCAGC-AGATCTGACTGAGCA-CT  143

seq1  TCATAAAGACATTATAAAGGGAGAAAGACAGCAACCATACACAGAACAGC  198
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  TCATAAAGACA-TATAAAGGGAGAAAGACAGCAACCATACACAGAACAG-  191

seq1  CTTTATCAGCCTTAAAGGTCAGTGCGGGTCACAGACTTAGGAATCACAGG  248
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCAG-CTTAAAGGTCAGTGCGGGTCACAGACTTAGGAATCACAGG  240

seq1  TATGATGGATGTCCGTGAAGGAAATAATGGAGTTTAGGGACCCGTGTGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGGATGTCCGTGAAGGAAATAATGGAGTTTAGGGACCCGTGTGGG  290

seq1  AGGCTGAAGCCAGCCACAGAGAAGACCATTTACATCATTCACTGTAAGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAGCCAGCCACAGAGAAGACCATTTACATCATTCACTGTAAGAG  340

seq1  TCGCCGTTTCCCCTCAAAGTTTGGAAGTAGAAAAAGGTTCAAATACACCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCGTTTCCCCTCAAAGTTTGGAAGTAGAAAAAGGTTCAAATACACCT  390

seq1  GGTGGCATATTCACCCAGGGAGGCCAGGAACTTATGTAGGAGCAGAGGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCATATTCACCCAGGGAGGCCAGGAACTTATGTAGGAGCAGAGGCA  440

seq1  GGAAACACAGAGCACAGCTGATACTGGTTTGTCCCCATGGCTCATGCTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACAGAGCACAGCTGATACTGGTTTGTCCCCATGGCTCATGCTCA  490

seq1  ACCAGGTTTATACAACCCAGACCCACATGCACAGGAGAAGCAATGGCCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTTTATACAACCCAGACCCACATGCACAGGAGAAGCAATGGCCAC  540

seq1  AGCAGGCAGGAGCCTCCTAATCAACCAACAACTGAGACCATTCACCATAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCAGGAGCCTCCTAATCAACCAACAACTGAGACCATTCACCATAG  590

seq1  ACACTGCCACAGGCCAACCTGAACTGGGCAATTTCTCAGCTGAGACTCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCCACAGGCCAACCTGAACTGGGCAATTTCTCAGCTGAGACTCAC  640

seq1  TTTTCTCAGGTGACTCCAAGTTCCAATTAATTAATAATAACAATTAGCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGGTGACTCCAAGTTCCAATTAATTAATAATAACAATTAGCAG  690

seq1  AACAGGCCAACTCCTAAAAGATCTTTTTATACATCAATGGAGATCCAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCCAACTCCTAAAAGATCTTTTTATACATCAATGGAGATCCAATT  740

seq1  ATATAAGAATAATATACCTGAACATCTGGAAGAATTATTTAGATGAATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGAATAATATACCTGAACATCTGGAAGAATTATTTAGATGAATTT  790

seq1  TTTTCCAATGTACAAAGGCAAGTTTTACACACGCATGCGCGTGCGCGCGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAATGTACAAAGGCAAGTTTTACACACGCATGCGCGTGCGCGCGC  840

seq1  ACACACACACACAGACAATACACACAAATGAATAAAATACATACAGAATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAGACAATACACACAAATGAATAAAATACATACAGAATA  890

seq1  GGTGACTCTGTTTTCAGACATACATTATAGGTTATAAAAATGTCAGTAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTCTGTTTTCAGACATACATTATAGGTTATAAAAATGTCAGTAAT  940

seq1  TTGAAATAGAAAAATAGGAAGCACTAAGCAAGGTGGTCCAGATGGGGGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAGAAAAATAGGAAGCACTAAGCAAGGTGGTCCAGATGGGGGGA  990

seq1  AAAGAACAAACTCTAGTTCTTTCTAAAGACACTGAATTAATTACGAGAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAAACTCTAGTTCTTTCTAAAGACACTGAATTAATTACGAGAAG  1040

seq1  GAATTACTATGTGGGAATTTTGGATGCTCATCACTGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACTATGTGGGAATTTTGGATGCTCATCACTGAATTC  1081