BAC Information

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BAC

Clone NameB6Ng01-069P07
Chromosome1 (Build37)
Map Location 59,122,864 - 59,271,224
singlet/doubletdoublet
Overlap geneAls2cr11, Als2cr4, Mpp4, Als2
Upstream geneAox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447
Downstream geneAls2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069P07.bB6Ng01-069P07.g
ACCDH888104DH888105
length1,164694
definitionDH888104|Mus musculus domesticus DNA, BAC clone: B6Ng01-069P07, 5' end.DH888105|Mus musculus domesticus DNA, BAC clone: B6Ng01-069P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,122,864 - 59,124,045)(59,270,529 - 59,271,224)
sequence
gaattcagtgctccctttatcttaaggtctagcccatcttggccatgttc
tcagagtttcttaaaataatgaatatgctccgtcatacctttaaagtgcc
acttgatcttagtacagtaatgaaacttacgtgacagggtctgttctctc
tggaggaggtgcaatattcataaacatagatggctcaatggctttctgaa
gaggttttaactgaacaaaaatgtaagtacagttagttataattcacagt
aatagaactaacatccccacccccaccccagctcccaaaggcctataggg
tccttaagtgacaaatctaaggagaagaggagtgaagacagcaacttaat
ttgttgagtactaaatatctgccaagcattatatatctttaactttctca
aatgcttttgacaaaaatatgaactaagtgtgcatattttatagattaca
ctgaagatcagtggttcactcaaagttacaaaatggtgtgcctgagtgta
ggacatagaacatgattgtaacttttctggctcttggatagagatctttt
cacatcatcacagcaggtgagcaggaggcatatcactgaaagcctcgcat
gcgtgttcacatgtgtgtgtgtgttcacatgtgtgtgtgttcacatgtgt
cgttcaggtgccagtactcaagctttctcactggcacggagctcatcaag
taggctacactggctggccagcaagcgccagggagcttcctgtttctacc
tctccagtgctgggattacaaatctgaaaataacccctccctttaagaat
agttactcttacaggttatgcttgtatctgaacacagacctacctctaaa
aatactcataagctttccatttaaaaatatattaacaatcatgatatagt
gtgggaaaaatgtaaatacattacagggtttttaattaacatagcagttg
acttatttagtaagatcactcttattctcagttagtaatcaaacctcacc
caaagactactaatgataccttgaaatggagttgtttccttgtacaacag
cagcagccgcagatggatcaggttaacacaggctggctctaacgatcaag
atagcagagctcctgcacaggggggtgacggttcgaatatggttgatttt
tgaaaattcctttt
gaattctcactgaagacttcagagtgggtgacaccactgctggaaacagt
gttccaaaaagacagtttctggtttgctcttgggattactggggatttac
gatttgctttgtgccaaaggtggtagtgggaaggaagcaagccatctaat
caggaatgaactgtttctgctctttttcactcaggggctttacagccatg
agagctctcagttctttattcccaaagctactgtcagagtacgaaggtgg
ggtgtttttagaaacagtcttgggtcacacaaactctttgaacttgttgg
tacctgactttttttttttcaattaagagtaaactgtttataagaaaaaa
atctaaagaaagcaacattaatttaccaagaatgtttatagaaaattctt
aaactgtatgtgtttataaaaaaatttgattttcctgatcttaagtttga
ggccagatcaggctacagaggtttttgcatcaaaaacaaacacagaaacg
agtttgcccttttagaagtcattcctctattaaattaaaggctgaaagct
tattgtattcagctcatttgggtatcaaattaccactattaaaattctgt
attccaaaaaaaaataaaaaccataagatatttcactttcctttgactta
ttttgattaattaattttttattttgtatattgggtttggaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59122864_59124045
seq2: B6Ng01-069P07.b_48_1211

seq1  GAATTCAGTGCTCCCTTTATCTTAAGGTCTAGCCCATCTTGGCCATGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTCCCTTTATCTTAAGGTCTAGCCCATCTTGGCCATGTTC  50

seq1  TCAGAGTTTCTTAAAATAATGAATATGCTCCGTCATACCTTTAAAGTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTTCTTAAAATAATGAATATGCTCCGTCATACCTTTAAAGTGCC  100

seq1  ACTTGATCTTAGTACAGTAATGAAACTTACGTGACAGGGTCTGTTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATCTTAGTACAGTAATGAAACTTACGTGACAGGGTCTGTTCTCTC  150

seq1  TGGAGGAGGTGCAATATTCATAAACATAGATGGCTCAATGGCTTTCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGGTGCAATATTCATAAACATAGATGGCTCAATGGCTTTCTGAA  200

seq1  GAGGTTTTAACTGAACAAAAATGTAAGTACAGTTAGTTATAATTCACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTAACTGAACAAAAATGTAAGTACAGTTAGTTATAATTCACAGT  250

seq1  AATAGAACTAACATCCCCACCCCCACCCCAGCTCCCAAAGGCCTATAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAACTAACATCCCCACCCCCACCCCAGCTCCCAAAGGCCTATAGGG  300

seq1  TCCTTAAGTGACAAATCTAAGGAGAAGAGGAGTGAAGACAGCAACTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAGTGACAAATCTAAGGAGAAGAGGAGTGAAGACAGCAACTTAAT  350

seq1  TTGTTGAGTACTAAATATCTGCCAAGCATTATATATCTTTAACTTTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAGTACTAAATATCTGCCAAGCATTATATATCTTTAACTTTCTCA  400

seq1  AATGCTTTTGACAAAAATATGAACTAAGTGTGCATATTTTATAGATTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTTGACAAAAATATGAACTAAGTGTGCATATTTTATAGATTACA  450

seq1  CTGAAGATCAGTGGTTCACTCAAAGTTACAAAATGGTGTGCCTGAGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATCAGTGGTTCACTCAAAGTTACAAAATGGTGTGCCTGAGTGTA  500

seq1  GGACATAGAACATGATTGTAACTTTTCTGGCTCTTGGATAGAGATCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATAGAACATGATTGTAACTTTTCTGGCTCTTGGATAGAGATCTTTT  550

seq1  CACATCATCACAGCAGGTGAGCAGGAGGCATATCACTGAAAGCCTCGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCATCACAGCAGGTGAGCAGGAGGCATATCACTGAAAGCCTCGCAT  600

seq1  GCGTGTTCACATGTGTGTGTGTGTTCACATGTGTGTGTGTTCACATGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTTCACATGTGTGTGTGTGTTCACATGTGTGTGTGTTCACATGTGT  650

seq1  CGTTCAGGTGCCAGTACTCAAGCTTTCTCACTGGCACGGAGCTCATCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCAGGTGCCAGTACTCAAGCTTTCTCACTGGCACGGAGCTCATCAAG  700

seq1  TAGGCTACACTGGCTGGCCAGCAAGCGCCAGGGAGCTTCCTGTTTCTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTACACTGGCTGGCCAGCAAGCGCCAGGGAGCTTCCTGTTTCTACC  750

seq1  TCTCCAGTGCTGGGATTACAAATCTGAAAATAACCCCTCCCTTTAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGTGCTGGGATTACAAATCTGAAAATAACCCCTCCCTTTAAGAAT  800

seq1  AGTTACTCTTACAGGTTATGCTTGTATCTGAACACAGACCTACCTCTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTCTTACAGGTTATGCTTGTATCTGAACACAGACCTACCTCTAAA  850

seq1  AATACTCATAAGC-TTCCATTTAAAAATATATTAACAATCATGATATAGT  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATACTCATAAGCTTTCCATTTAAAAATATATTAACAATCATGATATAGT  900

seq1  GT-GGAAAAATGTAAATACATTACAGGGTTTTTAATTAACATAGCAGTTG  948
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAAAATGTAAATACATTACAGGGTTTTTAATTAACATAGCAGTTG  950

seq1  ACTTATTTAGTAAGATCACTCTTATTCTCAGTTAGTAATCAAACCTCACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTAGTAAGATCACTCTTATTCTCAGTTAGTAATCAAACCTCACC  1000

seq1  CAAAGACTACTAAGGAAAACCCTGAAATGGAAGGTGGTTTCCTTGTACAA  1048
      ||||||||||||| | | ||| |||||||||  || ||||||||||||||
seq2  CAAAGACTACTAATG-ATACCTTGAAATGGA--GTTGTTTCCTTGTACAA  1047

seq1  CAGCAGCAGCCGCAGAATGGAATCAGGTTAACACAGGCCTGGCTCTAACG  1098
      ||||||||||||||| |||| |||||||||||||||| ||||||||||||
seq2  CAGCAGCAGCCGCAG-ATGG-ATCAGGTTAACACAGG-CTGGCTCTAACG  1094

seq1  ATCCAGGAATAGCAAGAGCTCTTGCAAACAGTGGGTGACAGTGTTTCGAT  1148
      ||| ||  ||||| ||||||| |||| |  | |||||||   | ||||| 
seq2  ATCAAG--ATAGC-AGAGCTCCTGCACA-GGGGGGTGAC---GGTTCGA-  1136

seq1  ATATTGGTATGATTTTTCTAGAATAATTCCTTTT  1182
      ||| |||| ||||||||   ||| ||||||||||
seq2  ATA-TGGT-TGATTTTT---GAA-AATTCCTTTT  1164

seq1: chr1_59270529_59271224
seq2: B6Ng01-069P07.g_73_766 (reverse)

seq1  ACTGCCAAAACCAATATACATAATAAAAACTTAATTTATCAAAATAAGTT  50
      ||| ||||| |||||||||| |||||||| |||||| ||||||||||| |
seq2  ACTTCCAAACCCAATATACAAAATAAAAAATTAATTAATCAAAATAAG-T  49

seq1  CAAAGGAAAGTGAAATATCTTATGGTTTTTTTTTTTTTTTTGGAATACAG  100
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  CAAAGGAAAGTGAAATATCTTATGG-TTTTTATTTTTTTTTGGAATACAG  98

seq1  AATTTTAATAGTGGTAATTTGATACCCAAATGAGCTGAATACAATAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAATAGTGGTAATTTGATACCCAAATGAGCTGAATACAATAAGCT  148

seq1  TTCAGCCTTAAATTTAATAGAGGAATGACTTCTAAAAGGGCAAACTCGTT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCTTTAATTTAATAGAGGAATGACTTCTAAAAGGGCAAACTCGTT  198

seq1  TCTGTGTTTGTTTTTGATGCAAAAACCTCTGTAGCCTGATCTGGCCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTGTTTTTGATGCAAAAACCTCTGTAGCCTGATCTGGCCTCAA  248

seq1  ACTTAAGATCAGGAAAATCAAATTTTTTTATAAACACATACAGTTTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGATCAGGAAAATCAAATTTTTTTATAAACACATACAGTTTAAGA  298

seq1  ATTTTCTATAAACATTCTTGGTAAATTAATGTTGCTTTCTTTAGATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTATAAACATTCTTGGTAAATTAATGTTGCTTTCTTTAGATTTTT  348

seq1  TTCTTATAAACAGTTTACTCTTAATTGAAAAAAAAAAAGTCAGGTACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAAACAGTTTACTCTTAATTGAAAAAAAAAAAGTCAGGTACCAA  398

seq1  CAAGTTCAAAGAGTTTGTGTGACCCAAGACTGTTTCTAAAAACACCCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCAAAGAGTTTGTGTGACCCAAGACTGTTTCTAAAAACACCCCAC  448

seq1  CTTCGTACTCTGACAGTAGCTTTGGGAATAAAGAACTGAGAGCTCTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTACTCTGACAGTAGCTTTGGGAATAAAGAACTGAGAGCTCTCATG  498

seq1  GCTGTAAAGCCCCTGAGTGAAAAAGAGCAGAAACAGTTCATTCCTGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAAGCCCCTGAGTGAAAAAGAGCAGAAACAGTTCATTCCTGATTA  548

seq1  GATGGCTTGCTTCCTTCCCACTACCACCTTTGGCACAAAGCAAATCGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTGCTTCCTTCCCACTACCACCTTTGGCACAAAGCAAATCGTAA  598

seq1  ATCCCCAGTAATCCCAAGAGCAAACCAGAAACTGTCTTTTTGGAACACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGTAATCCCAAGAGCAAACCAGAAACTGTCTTTTTGGAACACTG  648

seq1  TTTCCAGCAGTGGTGTCACCCACTCTGAAGTCTTCAGTGAGAATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCAGTGGTGTCACCCACTCTGAAGTCTTCAGTGAGAATTC  694