BAC Information

Click to search

BAC

Clone NameB6Ng01-070D17
Chromosome1 (Build37)
Map Location 85,181,284 - 85,182,514
singlet/doubletsinglet
Overlap geneLOC100040158, LOC621835
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742
Downstream geneEG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070D17.bB6Ng01-070D17.g
ACCDH888297DH888298
length1,2221,166
definitionDH888297|Mus musculus domesticus DNA, BAC clone: B6Ng01-070D17, 5' end.DH888298|Mus musculus domesticus DNA, BAC clone: B6Ng01-070D17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagcaagctagacaataatgccaaggacaaattatacgatagcc
tggagttcagattcttagtgagctttgaagccagagttcagtgatatgtg
gcctgttgaagtctatgctaatagcatactaacttctccaacttaaagca
gtcaacattcaaggaggatgtagctctacacacaatacaagagcatgggg
gaaggaagacacaggctgaaaaccagaaaagaaggcagtagaggaggaaa
tgagaggtgacattaaggataacaacccaatttaggtgccatcagtaaga
tactgtgtgtaacactcacatggtgagcactcacctcttttcttttgcga
tgtatccgtggaggattgggtagaaaatttctctgcaagataaaaggacc
tgagcatgtaggtatccgtatttcagtggtatgagttgcatttccaacct
ccttccaaaagttctgcctggttcagacccaagttgtctgactccatttc
cctcttgttacctatggactctagcctgtgacagctagaaagacccacct
tacatccatctttctctgctgcatcttccttaagtcctgagaatgttttc
ctacaatcactgattcaacctttaaatctacctgacccacttcagcttga
ctttccaccaggactagccagtcaacagccagtccttgcttgcatataga
gtgtcacagactctgatgaatttggagcacacaaagacaaaaaacctggt
ttaggaaggggggatgaggaaaaagctcatgaaagaaaaaggatctcttt
ccttgtctcctcctcctttacctcctcctctttcttcttcttccttcttc
ctccatctcttcctcctcctccttcttctcctctcctgtccttcttcttc
cttctccttctcctctcctcctccatcacctcctccctcttcttctctct
tttttcctgctctgtatcctggccattttactgtagaggtcttgaaatca
gagattcaccttcccttttgcctcagaaatgtttgggattaaaggcatgt
gcttgtgtttgccagcatacgaccaatcttcatacagtttagaggatctt
ctgggagcctgaggactagacagtcaggaggcaagaagatgtttttggct
agattctagaataatacctcagcctttctatgagagtgtgaatctcgttc
tgagaccagcctgtttccaaat
gaattctcacctgaggaataccaaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgcggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaatcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggagggtatcatcctgagtgaagtaacccaatcacaaag
gaactcgcacaatatgtactcactgataagtggatattagcccagaaact
taggataccgaagatataagatacaacttgccaaacgcatgaaattcaag
aagaacgaagaccaaagtgtggacactttaccctttcttagaaatgggaa
caaaacacccatagatggagttacagagacaaaatttggagctgtgatga
aaggatggaccatctagtgattgccatatgcagggatccatcccataatc
agcttccaaatgctggcaccatggcatacactagcaagattttgctgaaa
agacccagatatagctctctcttgtgagactatgccggggccagcaaaca
cagaagtggatgatcacagtcagctattggatgggtcacacggccccaat
ggaggagctagagaaattacccaagagctaaagggaactgcaccctatag
tgaacaacaattatgaactaacgagtacccgggagctctttgtcttagct
gcatatgtatcaaagatgctagtggccatcactgcaaagagaaggcccat
tgactgcacttatatgctcagtacaggaatcagcaaagggaattgtgggt
ggtgtgatagagaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85181284_85182514
seq2: B6Ng01-070D17.b_45_1266 (reverse)

seq1  ATTT-GAAACA-GCTGGTCTCAGACATGA-TTTCATCATCTCTCTATTTA  47
      |||| |||||| |||||||||||| | ||  |||| || |||||    ||
seq2  ATTTGGAAACAGGCTGGTCTCAGA-ACGAGATTCA-CA-CTCTC---ATA  44

seq1  GCAAGCCTGAGTATTTATTCTAGAATTCTTAGCTCAAACATC-TCTTCCC  96
      | ||| |||||   ||||||||||| |||   |  ||||||| |||| ||
seq2  GAAAGGCTGAGGTATTATTCTAGAA-TCTAGCCAAAAACATCTTCTTGCC  93

seq1  TCCCTGACTGTCCTAGTCCCTCA-GCTCCCAG-AGATCCTTCTTAAACTG  144
      | ||||||||| ||||| ||||| |||||||| |||||||   |||||||
seq2  T-CCTGACTGT-CTAGT-CCTCAGGCTCCCAGAAGATCCT--CTAAACTG  138

seq1  TATG-AGATTGGTTCTGTATGCTGGCAACCAC-AGCACATGCCTTTAAT-  191
      |||| ||||||||   |||||||||||| ||| |||||||||||||||| 
seq2  TATGAAGATTGGT--CGTATGCTGGCAAACACAAGCACATGCCTTTAATC  186

seq1  CCAAACATTTCTGAGGCAGA--GGGAGGTGAATCTCTGATTTCAAGACCT  239
      |||||||||||||||||| |  || |||||||||||||||||||||||||
seq2  CCAAACATTTCTGAGGCAAAAGGGAAGGTGAATCTCTGATTTCAAGACCT  236

seq1  CTACAGTAAAATGGCCAGGATACAGGAGCAGGAAAAAAAGGAGGAGAAGA  289
      |||||||||||||||||||||||| |||||||||||||  || |||||||
seq2  CTACAGTAAAATGGCCAGGATACA-GAGCAGGAAAAAA--GA-GAGAAGA  282

seq1  AGGAGGGAGGAGGAGAAGGAGGAGGAGGAGGAGAAGGAGAAGGAAGAAGA  339
      | ||||||||||| || ||||||||| |||||||||||||||||||||||
seq2  A-GAGGGAGGAGGTGATGGAGGAGGA-GAGGAGAAGGAGAAGGAAGAAGA  330

seq1  AGGACAGGAGAGGAGAAGAAGGAGGAGGAGGAAGAGATGGAGGAAGAAGG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGAGAGGAGAAGAAGGAGGAGGAGGAAGAGATGGAGGAAGAAGG  380

seq1  AAGAAGAAGAAAGAGGAGGAGGAAAAGGAGGAGGAGACAAGGAAAGAGAT  439
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGAAGAAGAAAGAGGAGGAGGTAAAGGAGGAGGAGACAAGGAAAGAGAT  430

seq1  CCTTTTTCTTTCATGAGCTTTTTCCTCATCCCCCCTTCCTAAACCAGGTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCTTTCATGAGCTTTTTCCTCATCCCCCCTTCCTAAACCAGGTT  480

seq1  TTTTGTCTTTGTGTGCTCCAAATTCATCAGAGTCTGTGACACTCTATATG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTTGTGTGCTCCAAATTCATCAGAGTCTGTGACACTCTATATG  530

seq1  CAAGCAAGGACTGGCTGTTGACTGGCTAGTCCTGGTGGAAAGTCAAGCTG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGGACTGGCTGTTGACTGGCTAGTCCTGGTGGAAAGTCAAGCTG  580

seq1  AAGTGGGTCAGGTAGATTTAAAGGTTGAATCAGTGATTGTAGGAAAACAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGTCAGGTAGATTTAAAGGTTGAATCAGTGATTGTAGGAAAACAT  630

seq1  TCTCAGGACTTAAGGAAGATGCAGCAGAGAAAGATGGATGTAAGGTGGGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGACTTAAGGAAGATGCAGCAGAGAAAGATGGATGTAAGGTGGGT  680

seq1  CTTTCTAGCTGTCACAGGCTAGAGTCCATAGGTAACAAGAGGGAAATGGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGCTGTCACAGGCTAGAGTCCATAGGTAACAAGAGGGAAATGGA  730

seq1  GTCAGACAACTTGGGTCTGAACCAGGCAGAACTTTTGGAAGGAGGTTGGA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACAACTTGGGTCTGAACCAGGCAGAACTTTTGGAAGGAGGTTGGA  780

seq1  AATGCAACTCATACCACTGAAATACGGATACCTACATGCTCAGGTCCTTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAACTCATACCACTGAAATACGGATACCTACATGCTCAGGTCCTTT  830

seq1  TATCTTGCAGAGAAATTTTCTACCCAATCCTCCACGGATACATCGCAAAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGCAGAGAAATTTTCTACCCAATCCTCCACGGATACATCGCAAAA  880

seq1  GAAAAGAGGTGAGTGCTCACCATGTGAGTGTTACACACAGTATCTTACTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGGTGAGTGCTCACCATGTGAGTGTTACACACAGTATCTTACTG  930

seq1  ATGGCACCTAAATTGGGTTGTTATCCTTAATGTCACCTCTCATTTCCTCC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACCTAAATTGGGTTGTTATCCTTAATGTCACCTCTCATTTCCTCC  980

seq1  TCTACTGCCTTCTTTTCTGGTTTTCAGCCTGTGTCTTCCTTCCCCCATGC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGCCTTCTTTTCTGGTTTTCAGCCTGTGTCTTCCTTCCCCCATGC  1030

seq1  TCTTGTATTGTGTGTAGAGCTACATCCTCCTTGAATGTTGACTGCTTTAA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATTGTGTGTAGAGCTACATCCTCCTTGAATGTTGACTGCTTTAA  1080

seq1  GTTGGAGAAGTTAGTATGCTATTAGCATAGACTTCAACAGGCCACATATC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGAAGTTAGTATGCTATTAGCATAGACTTCAACAGGCCACATATC  1130

seq1  ACTGAACTCTGGCTTCAAAGCTCACTAAGAATCTGAACTCCAGGCTATCG  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTCTGGCTTCAAAGCTCACTAAGAATCTGAACTCCAGGCTATCG  1180

seq1  TATAATTTGTCCTTGGCATTATTGTCTAGCTTGCTTGAATTC  1231
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTGTCCTTGGCATTATTGTCTAGCTTGCTTGAATTC  1222