BAC Information

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BAC

Clone NameB6Ng01-070E08
Chromosome1 (Build37)
Map Location 23,240,698 - 23,457,126
singlet/doubletdoublet
Overlap geneEG623356, Ogfrl1
Upstream geneRims1, Rims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4
Downstream geneLOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070E08.bB6Ng01-070E08.g
ACCDH888325DH888326
length1,2071,090
definitionDH888325|Mus musculus domesticus DNA, BAC clone: B6Ng01-070E08, 5' end.DH888326|Mus musculus domesticus DNA, BAC clone: B6Ng01-070E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,240,698 - 23,241,914)(23,456,026 - 23,457,126)
sequence
gaattccagaagtcaggcacaaaaatataaggttggtgtttataacactt
ttagaagatgccaataaatatttaataaatgtaacttcccttcatttctc
attttgttccttgtttgagagagggtttcatgtatcccagagtggcttca
aacttactacacagctgtgagtggcctaccatttcatcccaagggttatg
attagaggtatttgccccacatcttgtttttctttcatttcttgactctt
caacaggcaagggtgtttcttttcctgaggctaaagcaatgatgatctta
gatatgaaacttctagaccacttgtgatggtttgtataagcttggctcag
ggagtagcactattaggaggtgtagccttgttggagtaggtgtgtcagtg
taggtatggacttcaataccgttatcctagcagcctggaagttagccttc
tgccagctgcctttggaatgagaggtggaactctcagctccttcagcctc
acatctgcctggacactgccaagctcctgcctggatgataatggactgaa
attctaacctgtaagctagcctcaattaaatgtccttataagagttgcct
cggttatggtgtctgttcacagcagtaaaaccctaactaaaagtccactc
ttagtccctgaatcccagtgtctgactttctttagatcattgtcctttct
ttttccattttctacagaaatctgagattctaataaggttttctcttctc
cttgccattaaagtgcagaatcatctcgaagtttctccctgttttaccag
gcttgagaaatcctttgtaaaggactgggtgacacgcccacatttgctcc
tgtgtatcgtctcccctcttacactcccctgaggcttgcccatacctggt
ttgcctgttcagggaagcataagaagcagaaaagaatattctcccagcat
ttatgattctttagcccacatcacagacgagactaagaagctctactctg
tgaggccaatgaccaggccgtggaagtgtcggggcttctgagtgacagct
catgttgtcctgaggacaaactagacagacaggattgatcaaaccatgga
aagcttcaatgacatgtaaatgctttgactttattcccagaccctcgagg
tcataaaaaaattggaactagctctgtttgatacatggcaattgttggtt
ttcagtt
gaattctggataccagccctgcaactgaaatgtacctggtaaaaatgttt
tcacgttggtttccactggtggtacctttcattattgtgcagaaagactt
ttaaatttaatgtagtcttttctattgagagtggaggttagtctctgtgc
tggtcaagttctggccatttccttcctagaacatatctttcatttatgct
taatttacaattctgagggtttatgactcagaattaaatattagagctac
tgaatcttagcttataatgatcaatatttattgctgaaagtcttcaaagg
taaatttgcccatttatatttccatgtcaggtacacaaaagttggactac
atgttcatcacaacttcactacaaacaaggaactccttgtttcattagat
tttacctgttacagggagttcctgatgtggatcccactttaatgtttaat
taagttgctagttattgtctgtagcctgtcttccctttacagctgttaag
agagtatctctgaattcctgtgttctgttttcacagccagatgatgtggg
tgctggtttgagtaggaatggctcccatagattcatgtgtgtagatgctt
ggcccgtagggagaggcactattaggaggtgtggcattgttggagttggt
gtggccttgttggaggaagtgtatcactgtagaggtgggctttgaggtct
caagtctgaccagtatgacacaatcttctgtgacctgtgcatcaagatct
cttagctccttctccagggccatgtcagcctgtatgcggccatgcttccc
accatgatgataacggactaaacctctgaactgtaagccagccccaatga
aatgttttccttttataaatgttgctgtgatcatgctatctcttcacagc
aataaacccctaactagacagtgtagtgtgtttttaaataatctttcttg
ttttatagcctacttcagctgaggattacatttttatttatttaggaatg
tttacaactcgtttcatcaatatttcctgggataacctttctattcctgt
atgataggccgccctgcttgccttccgtttcctggtgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_23240698_23241914
seq2: B6Ng01-070E08.b_44_1250

seq1  GAATTCCAGAAGTCAGGCACAAAAATATAAGGTTGGTGTTTATAACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGTCAGGCACAAAAATATAAGGTTGGTGTTTATAACACTT  50

seq1  TTAGAAGATGCCAATAAATATTTAATAAATGTAACTTCCCTTCATTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGATGCCAATAAATATTTAATAAATGTAACTTCCCTTCATTTCTC  100

seq1  ATTTTGTTCCTTGTTTGAGAGAGGGTTTCATGTATCCCAGAGTGGCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTCCTTGTTTGAGAGAGGGTTTCATGTATCCCAGAGTGGCTTCA  150

seq1  AACTTACTACACAGCTGTGAGTGGCCTACCATTTCATCCCAAGGGTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACTACACAGCTGTGAGTGGCCTACCATTTCATCCCAAGGGTTATG  200

seq1  ATTAGAGGTATTTGCCCCACATCTTGTTTTTCTTTCATTTCTTGACTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGGTATTTGCCCCACATCTTGTTTTTCTTTCATTTCTTGACTCTT  250

seq1  CAACAGGCAAGGGTGTTTCTTTTCCTGAGGCTAAAGCAATGATGATCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGCAAGGGTGTTTCTTTTCCTGAGGCTAAAGCAATGATGATCTTA  300

seq1  GATATGAAACTTCTAGACCACTTGTGATGGTTTGTATAAGCTTGGCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAAACTTCTAGACCACTTGTGATGGTTTGTATAAGCTTGGCTCAG  350

seq1  GGAGTAGCACTATTAGGAGGTGTAGCCTTGTTGGAGTAGGTGTGTCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGCACTATTAGGAGGTGTAGCCTTGTTGGAGTAGGTGTGTCAGTG  400

seq1  TAGGTATGGACTTCAATACCGTTATCCTAGCAGCCTGGAAGTTAGCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATGGACTTCAATACCGTTATCCTAGCAGCCTGGAAGTTAGCCTTC  450

seq1  TGCCAGCTGCCTTTGGAATGAGAGGTGGAACTCTCAGCTCCTTCAGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCTGCCTTTGGAATGAGAGGTGGAACTCTCAGCTCCTTCAGCCTC  500

seq1  ACATCTGCCTGGACACTGCCAAGCTCCTGCCTGGATGATAATGGACTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGCCTGGACACTGCCAAGCTCCTGCCTGGATGATAATGGACTGAA  550

seq1  ATTCTAACCTGTAAGCTAGCCTCAATTAAATGTCCTTATAAGAGTTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAACCTGTAAGCTAGCCTCAATTAAATGTCCTTATAAGAGTTGCCT  600

seq1  CGGTTATGGTGTCTGTTCACAGCAGTAAAACCCTAACTAAAAGTCCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTATGGTGTCTGTTCACAGCAGTAAAACCCTAACTAAAAGTCCACTC  650

seq1  TTAGTCCCTGAATCCCAGTGTCTGACTTTCTTTAGATCATTGTCCTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCCTGAATCCCAGTGTCTGACTTTCTTTAGATCATTGTCCTTTCT  700

seq1  TTTTCCATTTTCTACAGAAATCTGAGATTCTAATAAGGTTTTCTCTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTTTCTACAGAAATCTGAGATTCTAATAAGGTTTTCTCTTCTC  750

seq1  CTTGCCATTAAAGTGCAGAATCATCTCGAAGTTTCTCCCTGTTTTACCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCATTAAAGTGCAGAATCATCTCGAAGTTTCTCCCTGTTTTACCAG  800

seq1  GCTTGAGAAATCCTTTGTAAAGGACTGGGTGACACGCCCACATTTGCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGAAATCCTTTGTAAAGGACTGGGTGACACGCCCACATTTGCTCC  850

seq1  TGTGTATCGTCTCCCCTCTTACACTCCCCTGAGGCTTGCCCATACCTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATCGTCTCCCCTCTTACACTCCCCTGAGGCTTGCCCATACCTGGT  900

seq1  TTGCCTGTTCAGGGAAGCATAAGAAGCAGAAAAGAATATTCTCCCAGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGTTCAGGGAAGCATAAGAAGCAGAAAAGAATATTCTCCCAGCAT  950

seq1  TTATGATTCTTTAGCCCACATCACAGACGAGACTAAGAAGCTCTAACTCT  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTATGATTCTTTAGCCCACATCACAGACGAGACTAAGAAGCTCT-ACTCT  999

seq1  GTGAGGCCAATGACAGGGCAGTGGAAGTGTCGGGGC-TCTGAGTGACAGC  1049
      ||||||||||||||  ||| |||||||||||||||| |||||||||||||
seq2  GTGAGGCCAATGACCAGGCCGTGGAAGTGTCGGGGCTTCTGAGTGACAGC  1049

seq1  TCAGTGTGT-CTGAGGGACAAAACTAGACAGACAGGATTGATCAGACCAT  1098
      |||   ||| |||| |||| |||||||||||||||||||||||| |||||
seq2  TCATGTTGTCCTGA-GGAC-AAACTAGACAGACAGGATTGATCAAACCAT  1097

seq1  GGAAAGCTTCAAATGACATGTAACATGCTTTGACTTTATTCCCAAGACCC  1148
      |||||||||| |||||||||||| ||||||||||||||||||| ||||||
seq2  GGAAAGCTTC-AATGACATGTAA-ATGCTTTGACTTTATTCCC-AGACCC  1144

seq1  TCCAGAGTCATAAAACAATTTTGAACTTAGCTCTGTTTGATACAGTGCAA  1198
      || || ||||||||| || || |||| |||||||||||||||||  ||||
seq2  TCGAG-GTCATAAAA-AAATTGGAAC-TAGCTCTGTTTGATACATGGCAA  1191

seq1  TTGTGTTTGTTTTTCAGTT  1217
      |||   ||| |||||||||
seq2  TTG---TTGGTTTTCAGTT  1207

seq1: chr1_23456026_23457126
seq2: B6Ng01-070E08.g_67_1156 (reverse)

seq1  ATGCACCAGAAACAGAAAGGCAAGCAGTGCGGCCTA-CATACAAGAATAG  49
      ||||||||| ||  | ||||||||||| |||||||| |||||| ||||||
seq2  ATGCACCAGGAAACGGAAGGCAAGCAGGGCGGCCTATCATACAGGAATAG  50

seq1  AAAGTTTAATCCCAAGGAAATATTGATTGAAACGAGTTGTAAACATTCCT  99
      |||| || ||||| |||||||||||| |||||||||||||||||||||||
seq2  AAAGGTT-ATCCC-AGGAAATATTGA-TGAAACGAGTTGTAAACATTCCT  97

seq1  AAATTAAATAAAAATGTAATTCCTTCAGCTGGAAGTAGGCTATAAAAACA  149
      ||| ||||||||||||||||  | |||||| |||||||||||| ||||||
seq2  AAA-TAAATAAAAATGTAAT--CCTCAGCT-GAAGTAGGCTAT-AAAACA  142

seq1  AGAAAGATTATTTAAAAAACACACCTACACTGTCTTAGTTAGGGGTTTTA  199
      ||||||||||||| ||||||||| |||||||||| |||||||||| ||||
seq2  AGAAAGATTATTT-AAAAACACA-CTACACTGTC-TAGTTAGGGG-TTTA  188

seq1  TTGCTGTGAAGAGATAGCATGATCACAGCAACATTTATAAAAGGAAAACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGAAGAGATAGCATGATCACAGCAACATTTATAAAAGGAAAACA  238

seq1  TTTCATTGGGGCTGGCTTACAGTTCAGAGGTTTAGTCCGTTATCATCATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGGGGCTGGCTTACAGTTCAGAGGTTTAGTCCGTTATCATCATG  288

seq1  GTGGGAAGCATGGCCGCATACAGGCTGACATGGCCCTGGAGAAGGAGCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGCATGGCCGCATACAGGCTGACATGGCCCTGGAGAAGGAGCTA  338

seq1  AGAGATCTTGATGCACAGGTCACAGAAGATTGTGTCATACTGGTCAGACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTTGATGCACAGGTCACAGAAGATTGTGTCATACTGGTCAGACT  388

seq1  TGAGACCTCAAAGCCCACCTCTACAGTGATACACTTCCTCCAACAAGGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTCAAAGCCCACCTCTACAGTGATACACTTCCTCCAACAAGGCC  438

seq1  ACACCAACTCCAACAATGCCACACCTCCTAATAGTGCCTCTCCCTACGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAACTCCAACAATGCCACACCTCCTAATAGTGCCTCTCCCTACGGG  488

seq1  CCAAGCATCTACACACATGAATCTATGGGAGCCATTCCTACTCAAACCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATCTACACACATGAATCTATGGGAGCCATTCCTACTCAAACCAG  538

seq1  CACCCACATCATCTGGCTGTGAAAACAGAACACAGGAATTCAGAGATACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACATCATCTGGCTGTGAAAACAGAACACAGGAATTCAGAGATACT  588

seq1  CTCTTAACAGCTGTAAAGGGAAGACAGGCTACAGACAATAACTAGCAACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACAGCTGTAAAGGGAAGACAGGCTACAGACAATAACTAGCAACT  638

seq1  TAATTAAACATTAAAGTGGGATCCACATCAGGAACTCCCTGTAACAGGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAACATTAAAGTGGGATCCACATCAGGAACTCCCTGTAACAGGTA  688

seq1  AAATCTAATGAAACAAGGAGTTCCTTGTTTGTAGTGAAGTTGTGATGAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAATGAAACAAGGAGTTCCTTGTTTGTAGTGAAGTTGTGATGAAC  738

seq1  ATGTAGTCCAACTTTTGTGTACCTGACATGGAAATATAAATGGGCAAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTCCAACTTTTGTGTACCTGACATGGAAATATAAATGGGCAAATT  788

seq1  TACCTTTGAAGACTTTCAGCAATAAATATTGATCATTATAAGCTAAGATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTGAAGACTTTCAGCAATAAATATTGATCATTATAAGCTAAGATT  838

seq1  CAGTAGCTCTAATATTTAATTCTGAGTCATAAACCCTCAGAATTGTAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCTCTAATATTTAATTCTGAGTCATAAACCCTCAGAATTGTAAAT  888

seq1  TAAGCATAAATGAAAGATATGTTCTAGGAAGGAAATGGCCAGAACTTGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATAAATGAAAGATATGTTCTAGGAAGGAAATGGCCAGAACTTGAC  938

seq1  CAGCACAGAGACTAACCTCCACTCTCAATAGAAAAGACTACATTAAATTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGAGACTAACCTCCACTCTCAATAGAAAAGACTACATTAAATTT  988

seq1  AAAAGTCTTTCTGCACAATAATGAAAGGTACCACCAGTGGAAACCAACGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTTTCTGCACAATAATGAAAGGTACCACCAGTGGAAACCAACGT  1038

seq1  GAAAACATTTTTACCAGGTACATTTCAGTTGCAGGGCTGGTATCCAGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATTTTTACCAGGTACATTTCAGTTGCAGGGCTGGTATCCAGAAT  1088

seq1  TC  1101
      ||
seq2  TC  1090