BAC Information

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BAC

Clone NameB6Ng01-070G19
Chromosome1 (Build37)
Map Location 183,276,164 - 183,446,070
singlet/doubletdoublet
Overlap geneCnih3, Ccdc121
Upstream geneItpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519
Downstream geneA230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070G19.bB6Ng01-070G19.g
ACCDH888433DH888434
length1,207183
definitionDH888433|Mus musculus domesticus DNA, BAC clone: B6Ng01-070G19, 5' end.DH888434|Mus musculus domesticus DNA, BAC clone: B6Ng01-070G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(183,444,847 - 183,446,070)(183,276,164 - 183,276,346)
sequence
gaattccacacccctaagccccttaccccataaaaacccctaccttccaa
gtctcgtggccgacatccgttatctcctgtgtgagatgcatgtcggtcag
gagctccgtcattaaactgcctcatgtgattacagcaatggattctcgtg
tttctttgggtgctctctccctcccgagactagagtggggggtcttacaa
tggaatctaccgcactggtctaaatttggtggagccacccaaaggtggtc
ctgagacaatgagccagatggctacataacccagatgtcaaaaattaaaa
tacagaagagcaaacaaataaagtgccacatggttttccaagtcaaccct
tttctgacagctccagaaaaatattcctaggtagctgggtggttggtgtc
cccagggacccagcgttggggactatgtctgagaataagacctttctcct
ggcttcacaagacaagaattaataatgatgccccagcaggccactcatta
ggatgctgagttttgcaatttgtccctgtgggaagagattgtttgtcatt
gaggaggtgctagcctcagcttctggaaaagggaataaattatttcttac
tcggcactcttgctggctccttagcgccacttgtaactgcttaaatgcac
agagagtggtaggactctaaagtgaaagacctagttgccacttgcaggct
gccacttggcagaccctgctttggagcaattggccaggatctgtgtggca
tggaagtcctctgccttgctcagttcccataggcagagcaaaaggaagct
cgctgttcttgctgtgttcatagtctgctctggcttcctctggctgtgaa
gagcatcaggaagtgtgctgcactgatgggtgtatctggggagttccttg
gaagctcagagggcacaggtgggtaatgtgagccctctctggagtgagaa
gggtctgacacctgaaagcggactgtatcactttctatgggttcacattg
acaagtagctgtctcaagtctttgtctcctcatcttaaaaaatgggtatt
gacagtcatctcccctctcaaaggcatggagcaatccttactgaatgtac
tacgaatctgaaatctatccctggagctgcgattctcacccaagcattcc
atctgaatgctctttaaacctggactagtagtgatacacttgagactgga
ccaaaga
acaggcaggagagatagctcagcaataaaggccctcggctctgcttggtc
agtctctaagactcacacagtagaaggagagaaatgactgccacaaatag
ttctatgagttcttatggaataagacaatgaagcttcttgctttcttctg
tgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_183444847_183446070
seq2: B6Ng01-070G19.b_45_1251 (reverse)

seq1  TCTTTGGTCCAGAGTTCAAAGTTGATCATCTAACTACT-GTCAGTGGCTC  49
      ||||||||||  |||   ||||  |||     |||||| |||    | | 
seq2  TCTTTGGTCC--AGTCTCAAGTGTATC-----ACTACTAGTC--CAGGTT  41

seq1  TAAGGACGCACTAGGATGGGATGGCTATGGGGTGAG-ATCGCCAGCTCAA  98
      ||| || ||| |  ||||| |||    | ||||||| |||| |||||| |
seq2  TAAAGA-GCATTCAGATGGAATG---CTTGGGTGAGAATCG-CAGCTCCA  86

seq1  GGGATAGAATTTTCAGATCAGTAGTACATTCAGTAGGGATTTGCTCCATG  148
      ||||||||  ||||||||  ||||||||||||||| ||| ||||||||||
seq2  GGGATAGA--TTTCAGATTCGTAGTACATTCAGTAAGGA-TTGCTCCATG  133

seq1  CCCTTTGAGA-GGGAGATGGACTTGTC-ATACCCATTTTTT-AGATGAGG  195
       ||||||||| ||||||| ||| |||| ||||||||||||| ||||||||
seq2  -CCTTTGAGAGGGGAGAT-GAC-TGTCAATACCCATTTTTTAAGATGAGG  180

seq1  AGACAAAGACTTGAGACAGCTACTTGTTCAATGTGAACCCATAGAAAGTG  245
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGACAAAGACTTGAGACAGCTACTTG-TCAATGTGAACCCATAGAAAGTG  229

seq1  ATACAGTCCGCTTTCAGGTGTCAGACCCTTCTCACTCCAGAGAGGGCTCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTCCGCTTTCAGGTGTCAGACCCTTCTCACTCCAGAGAGGGCTCA  279

seq1  CATTACCCACCCTGTGCCCTCTGAGCTTCCAAGGAACTCCCCAGATACAC  345
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCCA-CCTGTGCCCTCTGAGCTTCCAAGGAACTCCCCAGATACAC  328

seq1  CCATCAGTGCAGCACACTTCCTGATGCTCTTCACAGCCAGAGGAAGCCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTGCAGCACACTTCCTGATGCTCTTCACAGCCAGAGGAAGCCAG  378

seq1  AGCAGACTATGAACACAGCAAGAACAGCGAGCTTCCTTTTGCTCTGCCTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTATGAACACAGCAAGAACAGCGAGCTTCCTTTTGCTCTGCCTA  428

seq1  TGGGAACTGAGCAAGGCAGAGGACTTCCATGCCACACAGATCCTGGCCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTGAGCAAGGCAGAGGACTTCCATGCCACACAGATCCTGGCCAA  478

seq1  TTGCTCCAAAGCAGGGTCTGCCAAGTGGCAGCCTGCAAGTGGCAACTAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCAAAGCAGGGTCTGCCAAGTGGCAGCCTGCAAGTGGCAACTAGG  528

seq1  TCTTTCACTTTAGAGTCCTACCACTCTCTGTGCATTTAAGCAGTTACAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACTTTAGAGTCCTACCACTCTCTGTGCATTTAAGCAGTTACAAG  578

seq1  TGGCGCTAAGGAGCCAGCAAGAGTGCCGAGTAAGAAATAATTTATTCCCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCTAAGGAGCCAGCAAGAGTGCCGAGTAAGAAATAATTTATTCCCT  628

seq1  TTTCCAGAAGCTGAGGCTAGCACCTCCTCAATGACAAACAATCTCTTCCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAAGCTGAGGCTAGCACCTCCTCAATGACAAACAATCTCTTCCC  678

seq1  ACAGGGACAAATTGCAAAACTCAGCATCCTAATGAGTGGCCTGCTGGGGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACAAATTGCAAAACTCAGCATCCTAATGAGTGGCCTGCTGGGGC  728

seq1  ATCATTATTAATTCTTGTCTTGTGAAGCCAGGAGAAAGGTCTTATTCTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATTAATTCTTGTCTTGTGAAGCCAGGAGAAAGGTCTTATTCTCA  778

seq1  GACATAGTCCCCAACGCTGGGTCCCTGGGGACACCAACCACCCAGCTACC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGTCCCCAACGCTGGGTCCCTGGGGACACCAACCACCCAGCTACC  828

seq1  TAGGAATATTTTTCTGGAGCTGTCAGAAAAGGGTTGACTTGGAAAACCAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATATTTTTCTGGAGCTGTCAGAAAAGGGTTGACTTGGAAAACCAT  878

seq1  GTGGCACTTTATTTGTTTGCTCTTCTGTATTTTAATTTTTGACATCTGGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACTTTATTTGTTTGCTCTTCTGTATTTTAATTTTTGACATCTGGG  928

seq1  TTATGTAGCCATCTGGCTCATTGTCTCAGGACCACCTTTGGGTGGCTCCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGCCATCTGGCTCATTGTCTCAGGACCACCTTTGGGTGGCTCCA  978

seq1  CCAAATTTAGACCAGTGCGGTAGATTCCATTGTAAGACCCCCCACTCTAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTTAGACCAGTGCGGTAGATTCCATTGTAAGACCCCCCACTCTAG  1028

seq1  TCTCGGGAGGGAGAGAGCACCCAAAGAAACACGAGAATCCATTGCTGTAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGGAGGGAGAGAGCACCCAAAGAAACACGAGAATCCATTGCTGTAA  1078

seq1  TCACATGAGGCAGTTTAATGACGGAGCTCCTGACCGACATGCATCTCACA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGAGGCAGTTTAATGACGGAGCTCCTGACCGACATGCATCTCACA  1128

seq1  CAGGAGATAACGGATGTCGGCCACGAGACTTGGAAGGTAGGGGTTTTTAT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATAACGGATGTCGGCCACGAGACTTGGAAGGTAGGGGTTTTTAT  1178

seq1  GGGGTAAGGGGCTTAGGGGTGTGGAATTC  1224
      |||||||||||||||||||||||||||||
seq2  GGGGTAAGGGGCTTAGGGGTGTGGAATTC  1207

seq1: chr1_183276164_183276346
seq2: B6Ng01-070G19.g_74_256

seq1  ACAGGCAGGAGAGATAGCTCAGCAATAAAGGCCCTCGGCTCTGCTTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGGAGAGATAGCTCAGCAATAAAGGCCCTCGGCTCTGCTTGGTC  50

seq1  AGTCTCTAAGACTCACACAGTAGAAGGAGAGAAATGACTGCCACAAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTAAGACTCACACAGTAGAAGGAGAGAAATGACTGCCACAAATAG  100

seq1  TTCTATGAGTTCTTATGGAATAAGACAATGAAGCTTCTTGCTTTCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGAGTTCTTATGGAATAAGACAATGAAGCTTCTTGCTTTCTTCTG  150

seq1  TGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTG  183
      |||||||||||||||||||||||||||||||||
seq2  TGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTG  183