BAC Information

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BAC

Clone NameB6Ng01-070J19
Chromosome1 (Build37)
Map Location 189,912,495 - 190,081,411
singlet/doubletdoublet
Overlap geneEsrrg
Upstream geneSpata17, Gpatch2, 9330162B11Rik
Downstream geneUsh2a, Kctd3, Kcnk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070J19.bB6Ng01-070J19.g
ACCDH888566DH888567
length1,181942
definitionDH888566|Mus musculus domesticus DNA, BAC clone: B6Ng01-070J19, 5' end.DH888567|Mus musculus domesticus DNA, BAC clone: B6Ng01-070J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(189,912,495 - 189,913,666)(190,080,476 - 190,081,411)
sequence
gaattcaggttgtctgcaagagttgtctgagctcctgacccctgaaccaa
ctctccagcctggtctctgggtttcttctgtagttcctattctataatgg
tagtaagaaagaattcttcatggaggaacataaagtatatctcccagaga
acaatagtcagtcgttggagatcaaatcaatttccagggtttctatctat
cattgctcacgttctgtagatgtaaaagagaaagcatggggctattttca
ttattgtagtatttgaaaaattctgtcatgtagcacgaggaaagagtgag
cctaagttatcccaagagaatatttcacaattattaaatagtaatttaca
ctagcagggctgtactaatgaaacttgcaagagagaatgtgactgtttgc
cttctcttccttcttggcagaagagttgtctaagagcagcctacagccgc
tgcatctacccaatcaggcggacttttaccttctcaatgaagtacactgt
cggcactacaggctccgctccagacagtcaggaaatgggacttcatttag
ttaacctcattaaggcttgagtaagggtgtgttaccgatgcttagtccat
aaccctgcaagatgagtgtgacttctctgttgtccttttctttaaactgg
catagttctgcagagaccagcattccactagatggagcagaatggcagca
agatgcgtggacggagcccagtgggcatcgcagagtggggactggcgcga
gcagggaaggatggatgcatggctggagaatgtgagcagccagagctggt
ggggctgggaagagagggtgcgctggccagaacatttgtccagtgaaatg
aatgcagaaggatgaagggtttccagtgttacaaaatgaacccattgtat
gtttttagttttgtaagtgtgtacgtgtatttatgtatgttgtgtgtgtc
tgaaagtgcgagcgtgtgtaggagtgcatagcttatttgcatgctaacag
gtcaacctggggatgtcttagttgctacttcaccttgaatgttgagacag
catcttcctactgtcatggaagcctctactggagctgtgcgggtacccac
ccagtcttccacgtccaggaacagagaataacatatcccgtgccaccatg
cttagctttatttaatttttttttaaaaata
gaattcaagagtggctttctagatctgaggctggcagcaaggtaacagct
gtggagcggtgagggacaggaacaggccagcgagttaatggctgctgagc
aggataaataggagggtgtggggccgcaaatgagaacaacacacagtgaa
aggcagcaggcaagcagagcaccgaccgtgaggctgagcacaagccagac
aggtgatcagcaataattacgagtcaggtttctgcaaagagctgtgaccc
tcagaatagtgcggctgttcagcaaaagaagatgcgatgcgcaggttgtc
tgcaccccgggggttttctgggaatgctgtgtattaactgaaagttaaaa
gaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagga
aggaaggaaggagagagagagagaaagagagaaagagacagagagaggaa
aacaaaggagaaaaggaggagaactcaaagttcaaggtttgggaaacaca
gctaagcagggagggcagtactaatagttgaagataatccatttgaaaga
caaaactgttccataaaatattttagtgtgttctgcctttagagtgaagg
ggcacaaaaggcaaaagtggaaacaaaactgattttgcttaggagacaga
caacaagagttgttctaagagggggtcacgtgactccatgccaacactaa
acttttccgataatcctctccaactcgatttctgtataattccctgagcc
agttcatggtagacagagcatttcttcattcaaacagtcaaatgcccagt
gcccctaaaatctgatgctgtgggatcaccgacatgacatgacaaatggg
aaggaaattttcctccccgcggctgcatgtgaagggctacaagccctagc
tcaggcttcccaaagtttcgtttaaagtaacgaccccaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189912495_189913666
seq2: B6Ng01-070J19.b_45_1225

seq1  GAATTCAGGTTGTCTGCAAGAGTTGTCTGAGCTCCTGACCCCTGAACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTGTCTGCAAGAGTTGTCTGAGCTCCTGACCCCTGAACCAA  50

seq1  CTCTCCAGCCTGGTCTCTGGGTTTCTTCTGTAGTTCCTATTCTATAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCCTGGTCTCTGGGTTTCTTCTGTAGTTCCTATTCTATAATGG  100

seq1  TAGTAAGAAAGAATTCTTCATGGAGGAACATAAAGTATATCTCCCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGAAAGAATTCTTCATGGAGGAACATAAAGTATATCTCCCAGAGA  150

seq1  ACAATAGTCAGTCGTTGGAGATCAAATCAATTTCCAGGGTTTCTATCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGTCAGTCGTTGGAGATCAAATCAATTTCCAGGGTTTCTATCTAT  200

seq1  CATTGCTCACGTTCTGTAGATGTAAAAGAGAAAGCATGGGGCTATTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTCACGTTCTGTAGATGTAAAAGAGAAAGCATGGGGCTATTTTCA  250

seq1  TTATTGTAGTATTTGAAAAATTCTGTCATGTAGCACGAGGAAAGAGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTAGTATTTGAAAAATTCTGTCATGTAGCACGAGGAAAGAGTGAG  300

seq1  CCTAAGTTATCCCAAGAGAATATTTCACAATTATTAAATAGTAATTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTTATCCCAAGAGAATATTTCACAATTATTAAATAGTAATTTACA  350

seq1  CTAGCAGGGCTGTACTAATGAAACTTGCAAGAGAGAATGTGACTGTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGGGCTGTACTAATGAAACTTGCAAGAGAGAATGTGACTGTTTGC  400

seq1  CTTCTCTTCCTTCTTGGCAGAAGAGTTGTCTAAGAGCAGCCTACAGCCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTCCTTCTTGGCAGAAGAGTTGTCTAAGAGCAGCCTACAGCCGC  450

seq1  TGCATCTACCCAATCAGGCGGACTTTTACCTTCTCAATGAAGTACACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTACCCAATCAGGCGGACTTTTACCTTCTCAATGAAGTACACTGT  500

seq1  CGGCACTACAGGCTCCGCTCCAGACAGTCAGGAAATGGGACTTCATTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACTACAGGCTCCGCTCCAGACAGTCAGGAAATGGGACTTCATTTAG  550

seq1  TTAACCTCATTAAGGCTTGAGTAAGGGTGTGTTACCGATGCTTAGTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTCATTAAGGCTTGAGTAAGGGTGTGTTACCGATGCTTAGTCCAT  600

seq1  AACCCTGCAAGATGAGTGTGACTTCTCTGTTGTCCTTTTCTTTAAACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGCAAGATGAGTGTGACTTCTCTGTTGTCCTTTTCTTTAAACTGG  650

seq1  CATAGTTCTGCAGAGACCAGCATTCCACTAGATGGAGCAGAATGGCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTCTGCAGAGACCAGCATTCCACTAGATGGAGCAGAATGGCAGCA  700

seq1  AGATGCGTGGACGGAGCCCAGTGGGCATCGCAGAGTGGGGACTGGCGCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCGTGGACGGAGCCCAGTGGGCATCGCAGAGTGGGGACTGGCGCGA  750

seq1  GCAGGGAAGGATGGATGCATGGCTGGAGAATGTGAGCAGCCAGAGCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAAGGATGGATGCATGGCTGGAGAATGTGAGCAGCCAGAGCTGGT  800

seq1  GGGGCTGGGAAGAGAGGGTGCGCTGGCCAGAACATTTGTCCAGTGAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGGAAGAGAGGGTGCGCTGGCCAGAACATTTGTCCAGTGAAATG  850

seq1  AATGCAGAAGGAATGAAGGGGTTTCCAGTGTTACAAAATGAACCCATTGT  900
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  AATGCAGAAGG-ATGAA-GGGTTTCCAGTGTTACAAAATGAACCCATTGT  898

seq1  ATGTTTTTAGTTTTGTAAGTGTGTACGTGTATTTATGTATGTTGTGTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTAGTTTTGTAAGTGTGTACGTGTATTTATGTATGTTGTGTGTG  948

seq1  TCTGAAAGTGCGAGCGTGTGTAGGAGTGCATAGGCTTATTTGCATGCT-A  999
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  TCTGAAAGTGCGAGCGTGTGTAGGAGTGCATA-GCTTATTTGCATGCTAA  997

seq1  CAGGTCAACCT-GGGATGTCTTAGTTGCTAC-TCACCTTGATTGTTGAGA  1047
      ||||||||||| ||||||||||||||||||| ||||||||| ||||||||
seq2  CAGGTCAACCTGGGGATGTCTTAGTTGCTACTTCACCTTGAATGTTGAGA  1047

seq1  CAGCATC-TCCTACTGTCAT-GAAG-CTCTACT-GAGC--TGCAGTGACC  1091
      ||||||| |||||||||||| |||| ||||||| ||||  ||| |  |||
seq2  CAGCATCTTCCTACTGTCATGGAAGCCTCTACTGGAGCTGTGCGGGTACC  1097

seq1  CA-CCAGTCTCCACCGTCCCAGGACAGAG-ATTACA-ATCCCGTGCCACC  1138
      || ||||||| |  |||||  | |||||| || ||| |||||||||||||
seq2  CACCCAGTCTTCCACGTCCAGGAACAGAGAATAACATATCCCGTGCCACC  1147

seq1  ATGCCTAGCTTTAATTAATTTTTTTTTAAAAATA  1172
      |||| |||||||| ||||||||||||||||||||
seq2  ATGCTTAGCTTTATTTAATTTTTTTTTAAAAATA  1181

seq1: chr1_190080476_190081411
seq2: B6Ng01-070J19.g_66_1007 (reverse)

seq1  CAGTT-GGGTGTTTACTTTAAACGAAACTTTTGGGAGCCTGAGCTAGGGC  49
      ||||| ||||  ||||||||||||||||||| || |||||||||||||||
seq2  CAGTTGGGGTCGTTACTTTAAACGAAACTTTGGGAAGCCTGAGCTAGGGC  50

seq1  -TGTAGCCCTTCACATGCAGCCGCCGGGGAGGAAAATTTCCCTTCCATTT  98
       |||||||||||||||||||||| ||||||||||||||||| | ||||||
seq2  TTGTAGCCCTTCACATGCAGCCG-CGGGGAGGAAAATTTCCTTCCCATTT  99

seq1  GTCATGTCATGTCGGTGATCCCACAGCATCAGATTCTA-GGGCACTTGGG  147
      ||||||||||||||||||||||||||||||||||| || |||||| ||||
seq2  GTCATGTCATGTCGGTGATCCCACAGCATCAGATTTTAGGGGCAC-TGGG  148

seq1  CATTTGACTGTTTGAATGAAG-AATGCTCTGTCTACCATGAACTGGCTCA  196
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATTTGACTGTTTGAATGAAGAAATGCTCTGTCTACCATGAACTGGCTCA  198

seq1  GGGAATTATACAGAAATCGAGTTGGAGAGGATTATCGGAAAAGTTTAGTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTATACAGAAATCGAGTTGGAGAGGATTATCGGAAAAGTTTAGTG  248

seq1  TTGGCATGGAGTCACGTGACCCCCTCTTAGAACAACTCTTGTTGTCTGTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATGGAGTCACGTGACCCCCTCTTAGAACAACTCTTGTTGTCTGTC  298

seq1  TCCTAAGCAAAATCAGTTTTGTTTCCACTTTTGCCTTTTGTGCCCCTTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGCAAAATCAGTTTTGTTTCCACTTTTGCCTTTTGTGCCCCTTCA  348

seq1  CTCTAAAGGCAGAACACACTAAAATATTTTATGGAACAGTTTTGTCTTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAGGCAGAACACACTAAAATATTTTATGGAACAGTTTTGTCTTTC  398

seq1  AAATGGATTATCTTCAACTATTAGTACTGCCCTCCCTGCTTAGCTGTGTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATTATCTTCAACTATTAGTACTGCCCTCCCTGCTTAGCTGTGTT  448

seq1  TCCCAAACCTTGAACTTTGAGTTCTCCTCCTTTTCTCCTTTGTTTTCCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACCTTGAACTTTGAGTTCTCCTCCTTTTCTCCTTTGTTTTCCTC  498

seq1  TCTCTGTCTCTTTCTCTCTTTCTCTCTCTCTC----TCCTTCCTTCCTTC  542
      ||||||||||||||||||||||||||||||||    ||||||||||||||
seq2  TCTCTGTCTCTTTCTCTCTTTCTCTCTCTCTCTCCTTCCTTCCTTCCTTC  548

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTTAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTTAA  598

seq1  CTTTCAGTTAATACACAGCATTCCCAGAAAACCCCCGGGGTGCAGACAAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTTAATACACAGCATTCCCAGAAAACCCCCGGGGTGCAGACAAC  648

seq1  CTGCGCATCGCATCTTCTTTTGCTGAACAGCCGCACTATTCTGAGGGTCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCATCGCATCTTCTTTTGCTGAACAGCCGCACTATTCTGAGGGTCA  698

seq1  CAGCTCTTTGCAGAAACCTGACTCGTAATTATTGCTGATCACCTGTCTGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTTTGCAGAAACCTGACTCGTAATTATTGCTGATCACCTGTCTGG  748

seq1  CTTGTGCTCAGCCTCACGGTCGGTGCTCTGCTTGCCTGCTGCCTTTCACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTCAGCCTCACGGTCGGTGCTCTGCTTGCCTGCTGCCTTTCACT  798

seq1  GTGTGTTGTTCTCATTTGCGGCCCCACACCCTCCTATTTATCCTGCTCAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGTTCTCATTTGCGGCCCCACACCCTCCTATTTATCCTGCTCAG  848

seq1  CAGCCATTAACTCGCTGGCCTGTTCCTGTCCCTCACCGCTCCACAGCTGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTAACTCGCTGGCCTGTTCCTGTCCCTCACCGCTCCACAGCTGT  898

seq1  TACCTTGCTGCCAGCCTCAGATCTAGAAAGCCACTCTTGAATTC  936
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGCTGCCAGCCTCAGATCTAGAAAGCCACTCTTGAATTC  942