BAC Information

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BAC

Clone NameB6Ng01-071A20
Chromosome1 (Build37)
Map Location 90,123,972 - 90,125,185
singlet/doubletsinglet
Overlap geneLOC100040766
Upstream geneEif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071A20.bB6Ng01-071A20.g
ACCDH888864DH888865
length1,1991,236
definitionDH888864|Mus musculus domesticus DNA, BAC clone: B6Ng01-071A20, 5' end.DH888865|Mus musculus domesticus DNA, BAC clone: B6Ng01-071A20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatagtcccaaatttgtaatacctagagaagagggagggcattg
tctttactaagcatattgttttattactgtgtgacaaagtataactactt
tagtagattaaaaaagttcccactatctcagtttctacatgggcaggtgt
ctgggtgtggcttgcctgggcccactgctcatggttttagaggatgcagc
caagttgtgggcaatgttacttttctcttttgcactcaataacctttcct
ttgcatgttatggttggcacaactcagttcccgtagttacaggactggga
accccagtttcaaaccacatggtccctccataggcagcacacatcaccaa
tctttcctctccgtgatggcagagtgtctttttctagtctgtgaagagcc
ccatgtgaacaatgtgatcctggaagtcaattcccatcacctttgccaac
aacacaagcaactcaatagagggaattcctataagcattgcatctaaggg
gacatcctgctccttttaccttatttaatggttcaaatggagtcacagat
tctacccacactgaaggaagagttttaaaaagtttgtgagctcctgggag
gtaatcttagggagtgttgtcacatggagtatttattaatctcatccatc
ttgaaggcacttgaggagacatgaaagaagccactgagttgaatgaagac
atgttggaggaagcagagcatctggcacttctagagccagaggatgatgg
taaggaagtcaaccacatcaccacaccactggtccctcttgggccactca
acaccacacctacaccatctttgtgtcacgtacattcttccaagtcacca
acctcctgaacatcatggacagtgaatcagcaaagacagacaccacaggg
ccaggcctggacatgcggaagaccttggcttcagtgataatcacaaagaa
gctaccacggatccctgtgtagtgatgaacgagctcatccgctgcctgca
gatgccagagtagggacaccctaagccgccagacctcctctttgaccaga
tacattagatgcctgggagtccacctaccattcagcacacctttcagtca
ccatgaacccactgttaaggcagatgcaagaaatgcctgaaacccaagca
ctcatatttcctagctagtgggtagatatctgtttgggaacaaattttg
gaattcctgatctttccagaacttttatcacgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggttgttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcagttagcgagaattttattgaggatttttgc
atcaatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccttctg
gtcctgggctttttttggctgggagactatttataactgcttgtatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtatcccttttcagttctgattttgttaat
taggattttgtctctgtgccctctattgagtctagctaagggtttatcta
tctttttgattttctcaaagaaccaactcctcatttggttaattctttga
atagtttttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgctgtctactcctcttgggtgaaatttgcttcctttttttctaga
gcttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttctt
catggaggcactcagagctatgagattccctcttagaaatgcttttcatt
gtgtcccaaaggttgggtacgttgtggcttcatttcattaactcctaaaa
gtctttaatttctttcttatcttcttgacaggttacattgagaagagtgt
tgttcagttccacggggttgtgcttcggttattttgttatggaagatcag
cctagtgctcgggaatcgattgatactggtacattcaactttgaactcgt
tgaggcgcgtctgtgcgacactataggtggcgcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_90123972_90125185
seq2: B6Ng01-071A20.b_45_1243

seq1  GAATTCCATAGTCCCAAATTTGTAATATCTAGAGAAGAGGGAGGGCATTG  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCCATAGTCCCAAATTTGTAATACCTAGAGAAGAGGGAGGGCATTG  50

seq1  TCTTTACTAAGCATATTGGTTTATTACTGTGTGACAAAGTATAACTACTT  100
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTTTACTAAGCATATTGTTTTATTACTGTGTGACAAAGTATAACTACTT  100

seq1  TAGTAGATTAAAAAAGTTCCCACTATCTCAGTTTCTACATGGGCAGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGTAGATTAAAAAAGTTCCCACTATCTCAGTTTCTACATGGGCAGGTGT  150

seq1  CTGGGTGTGGCTTGCCTGGGCCCACTGCTCATGGTCTTAGAGGATGCAGC  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTGGGTGTGGCTTGCCTGGGCCCACTGCTCATGGTTTTAGAGGATGCAGC  200

seq1  CAAGTTGTGGGCAATGTTACTTTTCTCTTTTGCACTCAATAACCTTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGTGGGCAATGTTACTTTTCTCTTTTGCACTCAATAACCTTTCCT  250

seq1  CTGCATGTGATGGTTGGCACAACTCAGTTCCCGTAGTTACAGGACTGGGA  300
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGTTATGGTTGGCACAACTCAGTTCCCGTAGTTACAGGACTGGGA  300

seq1  ACCCCAGTTTCAAACCACATGGTCCCTCCATAGGCAGCACACATCACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGTTTCAAACCACATGGTCCCTCCATAGGCAGCACACATCACCAA  350

seq1  TCTTTCCTCTCCGTGATGGCAGAGTGTCTTTTTCTAGTCTGTGAAGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTCTCCGTGATGGCAGAGTGTCTTTTTCTAGTCTGTGAAGAGCC  400

seq1  CCATGTGAACAATGTGATCCTGGAAGTCAATTCCCATCACCTTTGCCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAACAATGTGATCCTGGAAGTCAATTCCCATCACCTTTGCCAAC  450

seq1  AACACAAGCAACTCAAGAGAGGGAATTCCTATAAGCATTGCATCTAAGGG  500
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACACAAGCAACTCAATAGAGGGAATTCCTATAAGCATTGCATCTAAGGG  500

seq1  GAACATCCTGCTCCTTTTACGTTATTTAATGGTTCAAACGGAGTCACAGA  550
      | |||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  G-ACATCCTGCTCCTTTTACCTTATTTAATGGTTCAAATGGAGTCACAGA  549

seq1  TTCTACCCACACTGAAGGAAGAGTTTTAAAAAGTTTGTGAGCTCCTGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCCACACTGAAGGAAGAGTTTTAAAAAGTTTGTGAGCTCCTGGGA  599

seq1  GGTCTTCTTAGGGAGTGTTGTCACATGGAGTATTTATTAATCTCATCCAT  650
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATCTTAGGGAGTGTTGTCACATGGAGTATTTATTAATCTCATCCAT  649

seq1  CTTGAAGGCACTTGAGGAGACATGAAAGAAGCCACTGAGTTGAATGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGCACTTGAGGAGACATGAAAGAAGCCACTGAGTTGAATGAAGA  699

seq1  CATGTTGGAGGAAGCAGAGCATCTGGCACTTCTAGAGCCAGAGGATGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGGAGGAAGCAGAGCATCTGGCACTTCTAGAGCCAGAGGATGATG  749

seq1  GTAAGGAAGTCAACCACATCACCACACCACTGGTCCCTCTTGGGCCACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAAGTCAACCACATCACCACACCACTGGTCCCTCTTGGGCCACTC  799

seq1  AACACCACACCTACACCATCTTTGTGTCAGGTACATTCTTCCAAGTCACC  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACACCACACCTACACCATCTTTGTGTCACGTACATTCTTCCAAGTCACC  849

seq1  AACCTCCTGAACATCATGGACAGTGAATCAGCAAAGACAGACACCACAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCTGAACATCATGGACAGTGAATCAGCAAAGACAGACACCACAGG  899

seq1  GCCAGGCCTGGACATGCGGAAGACCTTGGCTTCAGTGATAATCACAGAGA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCCAGGCCTGGACATGCGGAAGACCTTGGCTTCAGTGATAATCACAAAGA  949

seq1  AGGCTACCACGGATCCCTGTGTAGTGATGAACGCGCTCATCCGCTGCCTG  1000
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  A-GCTACCACGGATCCCTGTGTAGTGATGAACGAGCTCATCCGCTGCCTG  998

seq1  CAGATGCCAGAGGTAGGGACACCCTAAGCCGCCAGACCTCCTCTTTGACC  1050
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCCAGA-GTAGGGACACCCTAAGCCGCCAGACCTCCTCTTTGACC  1047

seq1  AGATACATTTAGATGCCTGGGAGTCCACCTACCATTCAGCACACCTTTTC  1100
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  AGATACA-TTAGATGCCTGGGAGTCCACCTACCATTCAGCACACC-TTTC  1095

seq1  AGTCACCATGAACACAGCGTTAAGGGCCAAGATGC-AGAGATGGCTGACA  1149
      ||||||||||||| ||  |||||||    |||||| ||| ||| |||| |
seq2  AGTCACCATGAACCCACTGTTAAGG---CAGATGCAAGAAATGCCTGAAA  1142

seq1  CCAGAGGCACTCATATTCCTCAGGGCTAGTTGGGGTTAGAGTGATCTGTT  1199
      ||  | |||||||||||  ||   ||||||  ||||   ||  |||||||
seq2  CC-CAAGCACTCATATT--TCCTAGCTAGT--GGGT---AGATATCTGTT  1184

seq1  TGGGAGGCAATTTTG  1214
      |||||   |||||||
seq2  TGGGAACAAATTTTG  1199