BAC Information

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BAC

Clone NameB6Ng01-071F22
Chromosome1 (Build37)
Map Location 41,150,799 - 41,244,218
singlet/doubletdoublet
Overlap genenone
Upstream geneIl1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC100041441, LOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071F22.bB6Ng01-071F22.g
ACCDH889089DH889090
length1,178905
definitionDH889089|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F22, 5' end.DH889090|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,243,015 - 41,244,218)(41,150,799 - 41,151,696)
sequence
gaattcacatgtcaacagcacacaaactgtgaatagcacttcacctgtta
gtgtaacttgagaagagagcatcaagtagttctcataacctgtggcacag
acataccagaatcgcctgccatggtcccactgaagcaaaggggcttgagt
ggatggctgtcaacaagtaggggtaagtacatttcttgattcacttggaa
agttccacagggctttctggatcggtgcaaagaagccaaaattggctccc
tgacatgttctgcgagatcccaaatgtttttgaggactcgtgttgaagtg
agttgaaatgcattctatcacaaaaatgtacgtgaaacatttgtttcccg
tcagtttccaaacacccttgttcatctgagtagagagaaataaatgtagg
accctttaatgttcctggctgcatgcataagaatatgtatgagaagaaac
ctgaactagatcacgtgtgagagaaaatgaaatgttaacgagccaggagg
aaacttgttccagataggaaataataagaataacacaacagaaatggaga
actgaaagccagtggtaggaacctgctctaaagagtcaggcataggagca
aggtggaacctggggttggggagctgctccaaatccgggttttaaatggt
aagtgttcgtcctacctcttattagctcttctgggagttttcaacagcac
tctacaaatatatgaattcgagatagaaagtcatccacacattactaaac
attccatgtggcagtctattcattccatacagccctgagtacccatgagt
tcggcacccagctgtgcattcaattcaaccacaggccaaaagtacagatt
ttaaaaactggactggacctatttctaacacatacagatttttgttgtca
tcattccataaatgacacatgacgaacctatttacctagtacttatataa
gctgtgataagcaatccagaaattaaagtatattgaaagacagcatagat
tttaagtaatgtatagagctttatatcacgagtttgaacattctggatgg
tatgtgcaggagtcctggggtcaaccctggggaaagagagagatgactat
cagtgttctgtttactaattcggaaacaagggtactcaggtcacttaagc
tttagatttcttaactagaaaggaatat
gaattctgtctctggcctcattctcaggccttggaattgtttatccaggg
agagtgtactgtagcaatgaacccctcccagaagaagcaacgtgcctgaa
aactctacaaagaaaaaaaccacaatactggacatcaacatgactaaaat
agatggatagatagatagatagatagatagatagatagatagatagatag
atagatgttgtaaggtagaaaactacaacataggtgcttatctttttgca
ttttctattgttttatatttgaagcaaaaatatgccatggatgccattct
gaatgcccttctagaaacatttaatacctccataaaaaggaaaatatagt
tatatgaagcttacacatgtcattcatggaaattcagttatttataggaa
tacaggacaagaaaattagaaataccaaaaagttaaagagaacaaacagg
aaataaacaattttaatggtttatctcttcatagatcaaaaattatatag
cataaattatgtaattatgctgagtaaaagctttttgtagaatgaattaa
taaaaaaggactgcctatattttgtctattatgacagttaataagtataa
tgatgttggtgagttctaagctaaaagatgggttgaggggtggtcttctg
tggtagaatgccaacatattgaagggttcagtcttttcattctgtaaaag
agataaagcatggaaagcattacgttttatttttttctttttttttttca
aaacaaatcaatcagggctgagagttggctcacagtttaaaaacattgaa
cttctctttgcaaggacctaagttgggtttccatcatttcatgtgaggtg
gctcatattcatagcgatcttaagtccatctccatggggacaaaatgttt
tctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41243015_41244218
seq2: B6Ng01-071F22.b_47_1224 (reverse)

seq1  ATATCTCCTTTCTAGTTATAGGAAATCCTTAAAAGCTAGAGTGACCTGGA  50
      |||| |||||||||||  || ||||||    ||||||  |||||||| ||
seq2  ATAT-TCCTTTCTAGT--TAAGAAATC---TAAAGCTTAAGTGACCT-GA  43

seq1  GTTACTCCTGTGTTTTCCCGAATTTTAGTAAACAGGACACTGGATAGTCA  100
      | ||| ||| |||||  |||||  ||||||||||| ||||| ||||||||
seq2  G-TAC-CCT-TGTTT--CCGAA--TTAGTAAACAGAACACT-GATAGTCA  85

seq1  TCTCTCTCTTTTCCCCAGGGGTTGGACCCCAGGACTCCCTGCACATAACC  150
      |||||||| |||||||||||  | |||||||||||| ||||||||||   
seq2  TCTCTCTC-TTTCCCCAGGG--TTGACCCCAGGACT-CCTGCACATA---  128

seq1  CAATCCAAGAATGTTCAAACTCGTGATATAAAGCTCTATTACATTTACTT  200
      | |||| ||||||||||||||||||||||||||||||| |||| ||||||
seq2  CCATCC-AGAATGTTCAAACTCGTGATATAAAGCTCTA-TACA-TTACTT  175

seq1  AAAATCTATGCTTGTCTTTCAATATACTTTAATTTCTGGATTGCTTATCA  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTATGC-TGTCTTTCAATATACTTTAATTTCTGGATTGCTTATCA  224

seq1  CAGCTTATATAAGTACTAGGTAAATAGGTTCGTCATGTGTCATTTATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTATATAAGTACTAGGTAAATAGGTTCGTCATGTGTCATTTATGGA  274

seq1  ATGATGACAACAAAAATCTGTATGTGTTAGAAATAGGTCCAGTCCAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGACAACAAAAATCTGTATGTGTTAGAAATAGGTCCAGTCCAGTTT  324

seq1  TTAAAATCTGTACTTTTGGCCTGTGGTTGAATTGAATGCACAGCTGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCTGTACTTTTGGCCTGTGGTTGAATTGAATGCACAGCTGGGTG  374

seq1  CCGAACTCATGGGTACTCAGGGCTGTATGGAATGAATAGACTGCCACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAACTCATGGGTACTCAGGGCTGTATGGAATGAATAGACTGCCACATG  424

seq1  GAATGTTTAGTAATGTGTGGATGACTTTCTATCTCGAATTCATATATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTAGTAATGTGTGGATGACTTTCTATCTCGAATTCATATATTTG  474

seq1  TAGAGTGCTGTTGAAAACTCCCAGAAGAGCTAATAAGAGGTAGGACGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGCTGTTGAAAACTCCCAGAAGAGCTAATAAGAGGTAGGACGAAC  524

seq1  ACTTACCATTTAAAACCCGGATTTGGAGCAGCTCCCCAACCCCAGGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCATTTAAAACCCGGATTTGGAGCAGCTCCCCAACCCCAGGTTCC  574

seq1  ACCTTGCTCCTATGCCTGACTCTTTAGAGCAGGTTCCTACCACTGGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCTCCTATGCCTGACTCTTTAGAGCAGGTTCCTACCACTGGCTTT  624

seq1  CAGTTCTCCATTTCTGTTGTGTTATTCTTATTATTTCCTATCTGGAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCCATTTCTGTTGTGTTATTCTTATTATTTCCTATCTGGAACAA  674

seq1  GTTTCCTCCTGGCTCGTTAACATTTCATTTTCTCTCACACGTGATCTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCCTGGCTCGTTAACATTTCATTTTCTCTCACACGTGATCTAGT  724

seq1  TCAGGTTTCTTCTCATACATATTCTTATGCATGCAGCCAGGAACATTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTTCTTCTCATACATATTCTTATGCATGCAGCCAGGAACATTAAA  774

seq1  GGGTCCTACATTTATTTCTCTCTACTCAGATGAACAAGGGTGTTTGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTACATTTATTTCTCTCTACTCAGATGAACAAGGGTGTTTGGAAA  824

seq1  CTGACGGGAAACAAATGTTTCACGTACATTTTTGTGATAGAATGCATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACGGGAAACAAATGTTTCACGTACATTTTTGTGATAGAATGCATTTC  874

seq1  AACTCACTTCAACACGAGTCCTCAAAAACATTTGGGATCTCGCAGAACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTTCAACACGAGTCCTCAAAAACATTTGGGATCTCGCAGAACAT  924

seq1  GTCAGGGAGCCAATTTTGGCTTCTTTGCACCGATCCAGAAAGCCCTGTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGAGCCAATTTTGGCTTCTTTGCACCGATCCAGAAAGCCCTGTGG  974

seq1  AACTTTCCAAGTGAATCAAGAAATGTACTTACCCCTACTTGTTGACAGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCAAGTGAATCAAGAAATGTACTTACCCCTACTTGTTGACAGCC  1024

seq1  ATCCACTCAAGCCCCTTTGCTTCAGTGGGACCATGGCAGGCGATTCTGGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTCAAGCCCCTTTGCTTCAGTGGGACCATGGCAGGCGATTCTGGT  1074

seq1  ATGTCTGTGCCACAGGTTATGAGAACTACTTGATGCTCTCTTCTCAAGTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTGCCACAGGTTATGAGAACTACTTGATGCTCTCTTCTCAAGTT  1124

seq1  ACACTAACAGGTGAAGTGCTATTCACAGTTTGTGTGCTGTTGACATGTGA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAACAGGTGAAGTGCTATTCACAGTTTGTGTGCTGTTGACATGTGA  1174

seq1  ATTC  1204
      ||||
seq2  ATTC  1178

seq1: chr1_41150799_41151696
seq2: B6Ng01-071F22.g_66_970

seq1  GAATTCTGTCTCTGGCCTCATTCTCAGGCCTTGGAATTGTTTATCCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTCTGGCCTCATTCTCAGGCCTTGGAATTGTTTATCCAGGG  50

seq1  AGAGTGTACTGTAGCAATGAACCCCTCCCAGAAGAAGCAACGTGCCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTACTGTAGCAATGAACCCCTCCCAGAAGAAGCAACGTGCCTGAA  100

seq1  AACTCTACAAAGAAAAAAACCACAATACTGGACATCAACATGACTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTACAAAGAAAAAAACCACAATACTGGACATCAACATGACTAAAAT  150

seq1  AGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG  200

seq1  ATAGATGTTGTAAGGTAGAAAACTACAACATAGGTGCTTATCTTTTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTTGTAAGGTAGAAAACTACAACATAGGTGCTTATCTTTTTGCA  250

seq1  TTTTCTATTGTTTTATATTTGAAGCAAAAATATGCCATGGATGCCATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATTGTTTTATATTTGAAGCAAAAATATGCCATGGATGCCATTCT  300

seq1  GAATGCCCTTCTAGAAACATTTAATACCTCCATAAAAAGGAAAATATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCCTTCTAGAAACATTTAATACCTCCATAAAAAGGAAAATATAGT  350

seq1  TATATGAAGCTTACACATGTCATTCATGGAAATTCAGTTATTTATAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAAGCTTACACATGTCATTCATGGAAATTCAGTTATTTATAGGAA  400

seq1  TACAGGACAAGAAAATTAGAAATACCAAAAAGTTAAAGAGAACAAACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGACAAGAAAATTAGAAATACCAAAAAGTTAAAGAGAACAAACAGG  450

seq1  AAATAAACAATTTTAATGGTTTATCTCTTCATAGATCAAAAATTATATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACAATTTTAATGGTTTATCTCTTCATAGATCAAAAATTATATAG  500

seq1  CATAAATTATGTAATTATGCTGAGTAAAAGCTTTTTGTAGAATGAATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTATGTAATTATGCTGAGTAAAAGCTTTTTGTAGAATGAATTAA  550

seq1  TAAAAAAGGACTGCCTATATTTTGTCTATTATGACAGTTAATAAGTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGGACTGCCTATATTTTGTCTATTATGACAGTTAATAAGTATAA  600

seq1  TGATGTTGGTGAGTTCTAAGCTAAAAGATGGGTTGA-GGGTGGTCTTCTG  649
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGATGTTGGTGAGTTCTAAGCTAAAAGATGGGTTGAGGGGTGGTCTTCTG  650

seq1  TGGTAGAATGCCAACATATTGAA-GGTTCAGTC-TTTCATTCTGTAAAAG  697
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  TGGTAGAATGCCAACATATTGAAGGGTTCAGTCTTTTCATTCTGTAAAAG  700

seq1  AGATAAAGCATGG-AAGCATTACG-TTTATTTTTTTCTTTTTTTTTTTCA  745
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  AGATAAAGCATGGAAAGCATTACGTTTTATTTTTTTCTTTTTTTTTTTCA  750

seq1  AAACAAATCAATCAGGGCTGAGAGTTGGCTCACAGTTTAAAAACA-TGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAACAAATCAATCAGGGCTGAGAGTTGGCTCACAGTTTAAAAACATTGAA  800

seq1  CTTCTC-TTGCAGAGGACCTAAGTTGGGTTTCCATCA-TTCATGTGAGGT  842
      |||||| ||||| |||||||||||||||||||||||| ||||||||||||
seq2  CTTCTCTTTGCA-AGGACCTAAGTTGGGTTTCCATCATTTCATGTGAGGT  849

seq1  GGCTCATATTCATAGCGATCTTTAAGTCCATCTCCAT-GGGACAAAATGG  891
      |||||||||||||||||||| |||||||||||||||| ||||||||||| 
seq2  GGCTCATATTCATAGCGATC-TTAAGTCCATCTCCATGGGGACAAAATGT  898

seq1  TTTCTCC  898
      |||||||
seq2  TTTCTCC  905