BAC Information

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BAC

Clone NameB6Ng01-071K24
Chromosome1 (Build37)
Map Location 167,797,571 - 167,944,408
singlet/doubletdoublet
Overlap genePou2f1
Upstream geneXcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247
Downstream geneLOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071K24.bB6Ng01-071K24.g
ACCDH889317DH889318
length1,232358
definitionDH889317|Mus musculus domesticus DNA, BAC clone: B6Ng01-071K24, 5' end.DH889318|Mus musculus domesticus DNA, BAC clone: B6Ng01-071K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,943,164 - 167,944,408)(167,797,571 - 167,797,928)
sequence
gaattcaattgttcccttttctccaagttaccaagagcattgatcatgct
ttgtaactgagatgtacaggcccctgccctgctgattctataggttgctt
tctctaagataaatagcccccagactcagcggtttgagatgttctcattc
tgacagtttgctctcttccattgttacaaggctgccaacagatgtgtttg
gcttctcagggaggcagtctctaggagtatatttaccttcatcatatttt
taatttgataatttatctactttggagtttgaaatctcatggcttatgaa
aattctggctaacagaagtgaaacaaacaaattttaaaaatggtgcttta
acttttgacagaaagttggaaatgtttgcatgagaatgaagcagaagtct
ttaagagttgtctatttggaagtattttaaattaacgtttgatcttggct
gtttccccaaactggctaggggacttccagagaagctgtttttagtatac
acataactgggatgctggagagaggggttaaagatgatcttaagccctcc
atctcacccccatcaacattatcctattcattttatggaaattgtagtta
atattctgaattaattagattgtacaatcaatttcaaaagcataatgcag
tactgcataaaatttaataatgcataaaacttgttatggaaatttaaagt
tttagggcccagatggatttcaaacatgaattttgtatgaagaaatgaaa
caaaatagttttgttagagtaatttgctttattacaaaggaaaacatcca
cagcatcatttaaatactacatcattcatcacatgcagtatttcccagca
aactaatttaaaggtggactccagactcaataaatatcagaagggtatgt
cactgccccctcttcccccatcacctaatttctttggaagatcagcaggc
ttagtaaaaccagattcctaaaataagcattatcatctacagagaagact
ggaaatcataaatgatgtggagcaacttcccttgattatgacaggaagct
tgcatatgtaatccttgtagcgaataaacattctcaatttctagtttata
ttcatccaattccaggaaaacatattcataatatgaaatgatggagaaag
ttaattggcatcagacttctgcaatgagagaatataagcttctctcttgg
aagcagaaggtggcagcctcttattgaaaagc
tttttggtcatgtcacacgggaaacaagtgaaatgtgtagcttaggtcag
cttaaatgaaccttcgtgtcctttctaccaagtcctggcaatgagcagag
ccccaaggcttcagaagggaaaggtcagccttgagaccacttggaaaagc
aaggacagaagctgctgtctatccagcactttgaaatacagggtggatgg
ggagaggagagctggccatccttgaaggcaaggtggtggggacatggtaa
aaaacctgtgaggacccctagcaacaaagacaaacaggagattgcaattt
gccctcagtttctagtagcttaaaagcagagacattcagaggctttgggg
tggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_167943164_167944408
seq2: B6Ng01-071K24.b_45_1276 (reverse)

seq1  GCTTTTCTCACATAAGAGGCTGCCCCACCTTCTTTGCCTTCTCACAAGAG  50
      |||||||    |||||||||||  |||||||||    ||||   ||  ||
seq2  GCTTTTC---AATAAGAGGCTG--CCACCTTCT---GCTTC---CA--AG  37

seq1  AGAGAAACTAGTATT-TCTCATTGCCAGATAGTCCTGATTGCTATTTACT  99
      |||||| ||  |||| |||||||| |||| ||| |||||  | ||| |||
seq2  AGAGAAGCTTATATTCTCTCATTG-CAGA-AGT-CTGATGCCAATTAACT  84

seq1  TTCT-CATCTATTTCATATTATGATAATGTTTTCCTGGAATTGGATG-AT  147
      |||| |||| ||||||||||||||  ||||||||||||||||||||| ||
seq2  TTCTCCATC-ATTTCATATTATGAATATGTTTTCCTGGAATTGGATGAAT  133

seq1  ATAATACTAGAAATTGAAGATGTTTATTCGCTACAAAGATTACATATGCA  197
      |||| ||||||||||||  ||||||||||||||||| |||||||||||||
seq2  ATAA-ACTAGAAATTGAGAATGTTTATTCGCTACAAGGATTACATATGCA  182

seq1  GGCTTCCTGTCATAATCAAGGGAAGTTGCT-CACATCATTTATGATTTCC  246
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGCTTCCTGTCATAATCAAGGGAAGTTGCTCCACATCATTTATGATTTCC  232

seq1  AGTCTTCTCTGTAGATGATAATGCTTATTTTAGGAATCTGGTTTTACTAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTCTGTAGATGATAATGCTTATTTTAGGAATCTGGTTTTACTAA  282

seq1  GCCTGCTGATCTTCCAAAGAAATTAGGTGATGGGGGAAGAGGGGGCAGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTGATCTTCCAAAGAAATTAGGTGATGGGGGAAGAGGGGGCAGTG  332

seq1  ACATACCCTTCTGATATTTATTGAGTCTGGAGTCCACC-TTAAATTAGTT  395
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACATACCCTTCTGATATTTATTGAGTCTGGAGTCCACCTTTAAATTAGTT  382

seq1  TGCTGGGAAATACTGCATGTGATGAATGATGTAGTATTTAAATGATGCTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAAATACTGCATGTGATGAATGATGTAGTATTTAAATGATGCTG  432

seq1  TGGATGTTTTCCTTTGTAATAAAGCAAATTACTCTAACAAAACTATTTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTTTTCCTTTGTAATAAAGCAAATTACTCTAACAAAACTATTTTG  482

seq1  TTTCATTTCTTCATACAAAATTCATGTTTGAAATCCATCTGGGCCCTAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCTTCATACAAAATTCATGTTTGAAATCCATCTGGGCCCTAAA  532

seq1  ACTTTAAATTTCCATAACAAGTTTTATGCATTATTAAATTTTATGCAGTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAATTTCCATAACAAGTTTTATGCATTATTAAATTTTATGCAGTA  582

seq1  CTGCATTATGCTTTTGAAATTGATTGTACAATCTAATTAATTCAGAATAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTATGCTTTTGAAATTGATTGTACAATCTAATTAATTCAGAATAT  632

seq1  TAACTACAATTTCCATAAAATGAATAGGATAATGTTGATGGGGGTGAGAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACAATTTCCATAAAATGAATAGGATAATGTTGATGGGGGTGAGAT  682

seq1  GGAGGGCTTAAGATCATCTTTAACCCCTCTCTCCAGCATCCCAGTTATGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCTTAAGATCATCTTTAACCCCTCTCTCCAGCATCCCAGTTATGT  732

seq1  GTATACTAAAAACAGCTTCTCTGGAAGTCCCCTAGCCAGTTTGGGGAAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTAAAAACAGCTTCTCTGGAAGTCCCCTAGCCAGTTTGGGGAAAC  782

seq1  AGCCAAGATCAAACGTTAATTTAAAATACTTCCAAATAGACAACTCTTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGATCAAACGTTAATTTAAAATACTTCCAAATAGACAACTCTTAA  832

seq1  AGACTTCTGCTTCATTCTCATGCAAACATTTCCAACTTTCTGTCAAAAGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCTGCTTCATTCTCATGCAAACATTTCCAACTTTCTGTCAAAAGT  882

seq1  TAAAGCACCATTTTTAAAATTTGTTTGTTTCACTTCTGTTAGCCAGAATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCACCATTTTTAAAATTTGTTTGTTTCACTTCTGTTAGCCAGAATT  932

seq1  TTCATAAGCCATGAGATTTCAAACTCCAAAGTAGATAAATTATCAAATTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGCCATGAGATTTCAAACTCCAAAGTAGATAAATTATCAAATTA  982

seq1  AAAATATGATGAAGGTAAATATACTCCTAGAGACTGCCTCCCTGAGAAGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGATGAAGGTAAATATACTCCTAGAGACTGCCTCCCTGAGAAGC  1032

seq1  CAAACACATCTGTTGGCAGCCTTGTAACAATGGAAGAGAGCAAACTGTCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACATCTGTTGGCAGCCTTGTAACAATGGAAGAGAGCAAACTGTCA  1082

seq1  GAATGAGAACATCTCAAACCGCTGAGTCTGGGGGCTATTTATCTTAGAGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGAACATCTCAAACCGCTGAGTCTGGGGGCTATTTATCTTAGAGA  1132

seq1  AAGCAACCTATAGAATCAGCAGGGCAGGGGCCTGTACATCTCAGTTACAA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACCTATAGAATCAGCAGGGCAGGGGCCTGTACATCTCAGTTACAA  1182

seq1  AGCATGATCAATGCTCTTGGTAACTTGGAGAAAAGGGAACAATTGAATTC  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATCAATGCTCTTGGTAACTTGGAGAAAAGGGAACAATTGAATTC  1232

seq1: chr1_167797571_167797928
seq2: B6Ng01-071K24.g_72_429

seq1  TTTTTGGTCATGTCACACGGGAAACAAGTGAAATGTGTAGCTTAGGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTCATGTCACACGGGAAACAAGTGAAATGTGTAGCTTAGGTCAG  50

seq1  CTTAAATGAACCTTCGTGTCCTTTCTACCAAGTCCTGGCAATGAGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGAACCTTCGTGTCCTTTCTACCAAGTCCTGGCAATGAGCAGAG  100

seq1  CCCCAAGGCTTCAGAAGGGAAAGGTCAGCCTTGAGACCACTTGGAAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGGCTTCAGAAGGGAAAGGTCAGCCTTGAGACCACTTGGAAAAGC  150

seq1  AAGGACAGAAGCTGCTGTCTATCCAGCACTTTGAAATACAGGGTGGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGAAGCTGCTGTCTATCCAGCACTTTGAAATACAGGGTGGATGG  200

seq1  GGAGAGGAGAGCTGGCCATCCTTGAAGGCAAGGTGGTGGGGACATGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGAGCTGGCCATCCTTGAAGGCAAGGTGGTGGGGACATGGTAA  250

seq1  AAAACCTGTGAGGACCCCTAGCAACAAAGACAAACAGGAGATTGCAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGTGAGGACCCCTAGCAACAAAGACAAACAGGAGATTGCAATTT  300

seq1  GCCCTCAGTTTCTAGTAGCTTAAAAGCAGAGACATTCAGAGGCTTTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCAGTTTCTAGTAGCTTAAAAGCAGAGACATTCAGAGGCTTTGGGG  350

seq1  TGGGGTGG  358
      ||||||||
seq2  TGGGGTGG  358