BAC Information

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BAC

Clone NameB6Ng01-071O20
Chromosome1 (Build37)
Map Location 180,880,676 - 181,018,942
singlet/doubletdoublet
Overlap geneSmyd3
Upstream geneEG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b
Downstream geneLOC666354, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071O20.bB6Ng01-071O20.g
ACCDH889487DH889488
length1,1511,142
definitionDH889487|Mus musculus domesticus DNA, BAC clone: B6Ng01-071O20, 5' end.DH889488|Mus musculus domesticus DNA, BAC clone: B6Ng01-071O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,880,676 - 180,881,859)(181,017,779 - 181,018,942)
sequence
gaattctttgagaattcatgcatgcatatgatgtatttgaccatgataca
tatcccacttctctgcttaactccccatagatctgtctctgccatgtccc
cacctgcttcctactttaagcctccctttccttcccactgagtacgattt
gtgctgtccatgtgcttagacatgtaccacctggagcatgatcaatctac
caggtaccattcttaaagaaaactagctctctctctccctgtccaatgga
cattaattgtcaatagttcatcagctaggggtgggtgctcatgagcccct
ctcctcccacttttatgatatgaaattattctctagtttccaaaatctta
caatttacttatttctagtatataaaacctaagtctgtttctcctgtttg
ttttcttgtctcttgtttagttccttttgctcttgaaatcctgattttca
tggtaaggccatttggtaaccttgaataatgacttctgggctttctgagg
cctgggtggtagctggcttgtgtgaggctctctatccatttttcccagag
ccctgggaagcctactgcttggggcaactttgaatcactttaaagcatga
accagtttggctgtccagaccagaagctcatctagccccgacattcgttc
atcatttagcacatttgttatagaacaatcatttctcctcacagcaaatg
atcagccgtgtggggtctgagtgcaacggggacagaatcttctctagtct
aaccatctcagggagttcaggaaccagagacactgaacatttcccaggaa
aacttctgatgtctgagtttgtggcactgacaaatacttttggggacagt
ttggcagtcagccatctatctagactctcatcttcatatcagcctagatt
ttcctcccctgcccttaaacccctccactgtttcaaaattacctgtgtct
accctgtcattgttttgatgaaagctctgctgcagaccatgtgttctaca
ctacacagaagccataaagtcagagcagttaatctaacagagacacagga
agtagatgtgacgctgggcctagtacaagcaaagaagtattcatagaaat
cgagctaggaaaagaatcagttctctcactctttaattccagaagataat
a
gaattctacagggagcatagtcaccagctgccccctcacctgtgtgggga
tctgtccaggaccagagagtctgaggatacaggatgagtgtacagcccca
aacttactgataaagatgttctcgaatatacgctttgagactagttgctt
ggtctgtggaacctggtgttctccaaaaggcatgggaactggccttgtac
tgtagccctttctcctctgccctgccttcaaatgcaagagagagatggag
gaaatgaaaagatgaccattgtcttagccaaaagagccagccaccaccac
tgctctgtgtagcttgtgctgtatatattccacggtggggctgtagaggc
tccttctgttcgtaggctccactgccaccccaagaagggtacctgctgca
gtccaggtgaaagagtcaggcttgaatcgggtcaaatgcagatcccagct
ccttttaggtttttttctgttgcagttacttcaggagtgcagcactcacc
agaggtgttcctgcaagaccagatctatactcttggggcagacattagtt
cttctgtggaagaaggcacccacagctttctaacatgagcctctgtgatg
agccagggagtcagctcaggttctgtcttctgtcaccctggtgacagtga
gtctgacccatgtggctggccagacttcctcctcctcaaggaggccacct
taaagtcattttctgtcagaggccttctctgccctaccttgacttcaaac
aagtataatcatgtttagtagacacggggtgctttgttttcagttaagaa
aaaccacatggagtgtttgctctggggcattttgtcaagtctttcaacag
ataaccctgccccctcctccctgcattatccccaactcccccacacccat
atttatgttctgcatttgaaacagataaataagtcatgtatactgtatag
tacagctggtatccattaccagagtaaagcaaaggaagacagggggaggg
gaggagcgctgggtgtggcagagctagttgttatttaattaggctgcagt
ttaggcctcctgagaaatggatttgattgaatgagagacaagagccacct
tggttgatccggaactcagctgtagggaatatgaaggcacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_180880676_180881859
seq2: B6Ng01-071O20.b_44_1194

seq1  GAATTCTTTGAGAATTCATGCATGCATATGATGTATTTGACCATGATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGAATTCATGCATGCATATGATGTATTTGACCATGATACA  50

seq1  TATCCCACTTCTCTGCTTAACTCCCCATAGATCTGTCTCTGCCATGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCACTTCTCTGCTTAACTCCCCATAGATCTGTCTCTGCCATGTCCC  100

seq1  CACCTGCTTCCTACTTTAAGCCTCCCTTTCCTTCCCACTGAGTACGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTTCCTACTTTAAGCCTCCCTTTCCTTCCCACTGAGTACGATTT  150

seq1  GTGCTGTCCATGTGCTTAGACATGTACCACCTGGAGCATGATCAATCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTCCATGTGCTTAGACATGTACCACCTGGAGCATGATCAATCTAC  200

seq1  CAGGTACCATTCTTAAAGAAAACTAGCTCTCTCTCTCCCTGTCCAATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACCATTCTTAAAGAAAACTAGCTCTCTCTCTCCCTGTCCAATGGA  250

seq1  CATTAATTGTCAATAGTTCATCAGCTAGGGGTGGGTGCTCATGAGCCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTGTCAATAGTTCATCAGCTAGGGGTGGGTGCTCATGAGCCCCT  300

seq1  CTCCTCCCACTTTTATGATATGAAATTATTCTCTAGTTTCCAAAATCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCACTTTTATGATATGAAATTATTCTCTAGTTTCCAAAATCTTA  350

seq1  CAATTTACTTATTTCTAGTATATAAAACCTAAGTCTGTTTCTCCTGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTACTTATTTCTAGTATATAAAACCTAAGTCTGTTTCTCCTGTTTG  400

seq1  TTTTCTTGTCTCTTGTTTAGTTCCTTTTGCTCTTGAAATCCTGATTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGTCTCTTGTTTAGTTCCTTTTGCTCTTGAAATCCTGATTTTCA  450

seq1  TGGTAAGGCCATTTGGTAACCTTGAATAATGACTTCTGGGCTTTCTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGGCCATTTGGTAACCTTGAATAATGACTTCTGGGCTTTCTGAGG  500

seq1  CCTGGGTGGTAGCTGGCTTGTGTGAGGCTCTCTATCCATTTTTCCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTGGTAGCTGGCTTGTGTGAGGCTCTCTATCCATTTTTCCCAGAG  550

seq1  CCCTGGGAAGCCTACTGCTTGGGGCAACTTTGAATCACTTTAAAGCATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGAAGCCTACTGCTTGGGGCAACTTTGAATCACTTTAAAGCATGA  600

seq1  ACCAGTTTGGCTGTCCAGACCAGAAGCTCATCTAGCCCCGACATTCGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTTGGCTGTCCAGACCAGAAGCTCATCTAGCCCCGACATTCGTTC  650

seq1  ATCATTTAGCACATTTGTTATAGAACAATCATTTCTCCTCACAGCAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTAGCACATTTGTTATAGAACAATCATTTCTCCTCACAGCAAATG  700

seq1  ATCAGCCGTGTGGGGTCTGAGTGCAACGGGGACAGAATCTTCTCTAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCGTGTGGGGTCTGAGTGCAACGGGGACAGAATCTTCTCTAGTCT  750

seq1  AACCATCTCAGGGAGTTCAGGAACCAGAGACACTGAACATTTCCCAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTCAGGGAGTTCAGGAACCAGAGACACTGAACATTTCCCAGGAA  800

seq1  AACTTCTGATGTCTGAGTTTGTGGCACTGACAAATACTTTTGGGGACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGATGTCTGAGTTTGTGGCACTGACAAATACTTTTGGGGACAGT  850

seq1  TTGGCAGTCAGCCATCTATCTAGACTCTCATCTTCATATCAGCCTAGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTCAGCCATCTATCTAGACTCTCATCTTCATATCAGCCTAGATT  900

seq1  TTCCTCCCCTGCCCTTAAACCCCTCCACTGTTTCAAAAATTACCTGTGTC  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCCTCCCCTGCCCTTAAACCCCTCCACTGTTTC-AAAATTACCTGTGTC  949

seq1  TACCCTGTCATTGTTTTGATGGAAAGCTCTGCTGCAGGACCATGTGTTCT  1000
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  TACCCTGTCATTGTTTTGAT-GAAAGCTCTGCTGCA-GACCATGTGTTCT  997

seq1  ACAACTACAACAGGAAGCCATAAAGTTCAGAGCAGGTTTAATTCTAAACA  1050
      || ||||| ||| |||||||||||| |||||||||  |||| ||| ||||
seq2  AC-ACTAC-ACA-GAAGCCATAAAG-TCAGAGCAG--TTAA-TCT-AACA  1039

seq1  GAGACACAGGGAAAGGTAGATGTGGACGCTGGGGCCTAGTACAAGCAAAA  1100
      ||||||||||   | |||||||| |||||| ||||||||||||||| |||
seq2  GAGACACAGG---AAGTAGATGT-GACGCT-GGGCCTAGTACAAGC-AAA  1083

seq1  GAAGGGTATTCAATAGAAAAATACGAAGCTAGGAAAAAGAAATCAAGGTT  1150
      |||  |||||| |||||||    || |||||||||||   |||||  |||
seq2  GAA--GTATTC-ATAGAAA---TCG-AGCTAGGAAAA--GAATCA--GTT  1122

seq1  CTCTCACATCTTTAATATCCCCAGAGAGATAATA  1184
      ||||||| ||||||||    ||||| ||||||||
seq2  CTCTCAC-TCTTTAAT---TCCAGA-AGATAATA  1151

seq1: chr1_181017779_181018942
seq2: B6Ng01-071O20.g_67_1208 (reverse)

seq1  TTGTCCCTTCATATTTTCCCTTCAGGCCTGAGTTCTCCCAGATCCACCAA  50
      |||| ||||||||  |||||| |||  |||||||   || |||| |||||
seq2  TTGTGCCTTCATA--TTCCCTACAG--CTGAGTT---CCGGATCAACCAA  43

seq1  GGTGGCCTCTCTGGTCCTCTTCCATTTCAATCAAATCCCATTTTCTCTAG  100
      |||||   |||| || ||||  || |||||||||||||   |||||| ||
seq2  GGTGG---CTCTTGT-CTCT--CA-TTCAATCAAATCC--ATTTCTC-AG  83

seq1  GAGGCCTAACCTGCAGCCTATTTAAAATAACAACTGGCTCCTGCCACACC  150
      ||||||||| |||||||||| || ||||||||||| ||| ||||||||||
seq2  GAGGCCTAAACTGCAGCCTAATT-AAATAACAACTAGCT-CTGCCACACC  131

seq1  CAGCGCTCCTCCCCTCCCCCTTGTCTTCCTTTGCTTTACTCTGGTAATGG  200
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAGCGCTCCTCCCCTCCCCC-TGTCTTCCTTTGCTTTACTCTGGTAATGG  180

seq1  ATACCAGCTTGTACTATACAGTATACATGACTTATTTATCTGTTTTCAAA  250
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  ATACCAGC-TGTACTATACAGTATACATGACTTATTTATCTG-TTTCAAA  228

seq1  TGCAGAACATAATTATGGGTGTGGGGGAGTTGGGGATATTGCAGGGAGGA  300
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  TGCAGAACATAAATATGGGTGTGGGGGAGTTGGGGATAATGCAGGGAGGA  278

seq1  GGGGGCAGGGTTATCTGTTGAAAGACTTGACAAAATGCCCCAGAGCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCAGGGTTATCTGTTGAAAGACTTGACAAAATGCCCCAGAGCAAAC  328

seq1  ACTCCATGTGGTTTTTCTTAACTGAAAACAAAGCACCCCGTGTCTACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGTGGTTTTTCTTAACTGAAAACAAAGCACCCCGTGTCTACTAA  378

seq1  ACATGATTATACTTGTTTGAAGTCAAGGTAGGGCAGAGAAGGCCTCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTATACTTGTTTGAAGTCAAGGTAGGGCAGAGAAGGCCTCTGAC  428

seq1  AGAAAATGACTTTAAGGTGGCCTCCTTGAGGAGGAGGAAGTCTGGCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGACTTTAAGGTGGCCTCCTTGAGGAGGAGGAAGTCTGGCCAGC  478

seq1  CACATGGGTCAGACTCACTGTCACCAGGGTGACAGAAGACAGAACCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGTCAGACTCACTGTCACCAGGGTGACAGAAGACAGAACCTGAG  528

seq1  CTGACTCCCTGGCTCATCACAGAGGCTCATGTTAGAAAGCTGTGGGTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCCCTGGCTCATCACAGAGGCTCATGTTAGAAAGCTGTGGGTGCC  578

seq1  TTCTTCCACAGAAGAACTAATGTCTGCCCCAAGAGTATAGATCTGGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCACAGAAGAACTAATGTCTGCCCCAAGAGTATAGATCTGGTCTT  628

seq1  GCAGGAACACCTCTGGTGAGTGCTGCACTCCTGAAGTAACTGCAACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACACCTCTGGTGAGTGCTGCACTCCTGAAGTAACTGCAACAGAA  678

seq1  AAAAACCTAAAAGGAGCTGGGATCTGCATTTGACCCGATTCAAGCCTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTAAAAGGAGCTGGGATCTGCATTTGACCCGATTCAAGCCTGAC  728

seq1  TCTTTCACCTGGACTGCAGCAGGTACCCTTCTTGGGGTGGCAGTGGAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACCTGGACTGCAGCAGGTACCCTTCTTGGGGTGGCAGTGGAGCC  778

seq1  TACGAACAGAAGGAGCCTCTACAGCCCCACCGTGGAATATATACAGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAACAGAAGGAGCCTCTACAGCCCCACCGTGGAATATATACAGCACA  828

seq1  AGCTACACAGAGCAGTGGTGGTGGCTGGCTCTTTTGGCTAAGACAATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACACAGAGCAGTGGTGGTGGCTGGCTCTTTTGGCTAAGACAATGGT  878

seq1  CATCTTTTCATTTCCTCCATCTCTCTCTTGCATTTGAAGGCAGGGCAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTCATTTCCTCCATCTCTCTCTTGCATTTGAAGGCAGGGCAGAG  928

seq1  GAGAAAGGGCTACAGTACAAGGCCAGTTCCCATGCCTTTTGGAGAACACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGGCTACAGTACAAGGCCAGTTCCCATGCCTTTTGGAGAACACC  978

seq1  AGGTTCCACAGACCAAGCAACTAGTCTCAAAGCGTATATTCGAGAACATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCACAGACCAAGCAACTAGTCTCAAAGCGTATATTCGAGAACATC  1028

seq1  TTTATCAGTAAGTTTGGGGCTGTACACTCATCCTGTATCCTCAGACTCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGTAAGTTTGGGGCTGTACACTCATCCTGTATCCTCAGACTCTC  1078

seq1  TGGTCCTGGACAGATCCCCACACAGGTGAGGGGGCAGCTGGTGACTATGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTGGACAGATCCCCACACAGGTGAGGGGGCAGCTGGTGACTATGC  1128

seq1  TCCCTGTAGAATTC  1164
      ||||||||||||||
seq2  TCCCTGTAGAATTC  1142