BAC Information

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BAC

Clone NameB6Ng01-072C23
Chromosome1 (Build37)
Map Location 105,542,623 - 105,681,304
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041067
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072C23.bB6Ng01-072C23.g
ACCDH889671DH889672
length1,0121,103
definitionDH889671|Mus musculus domesticus DNA, BAC clone: B6Ng01-072C23, 5' end.DH889672|Mus musculus domesticus DNA, BAC clone: B6Ng01-072C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,680,761 - 105,681,304)(105,542,623 - 105,543,730)
sequence
gaattctgacacttacagagccaagtatttatcagaatataacaaatatc
tattttttaaagtaatagtattatttgagagaaaaatgtgcccactggag
gcccacattagaaatttatatataaatatggttacaattgctagctcaca
gtgttttggaaacatacagaccacagcttaaaggaaataagagggtttat
actaaggggaaaagagctttttcaagtgacatcatgagtgaccatggccc
aagtaaacagatatagattataccaaatctcatgttccattttggtatca
ctttcatgaatactttgtagttttacagaacaaaggaagtaataatttaa
ggcaattttaaaaatattttgattgatacatcagatacatgtagatgggg
ttgagagagctattccatagtcctaaaatgctataccaaatgactaagaa
gcacttaaagaaatgtttagtgtcctcagtgatcaggaattgcaaatcaa
aacgaccatgaaatttcaccatttaccaatcagaatggctaagatcaaaa
ccccaggtgacaaaatttgttggtgaggatgtgaagaaagagaaacactc
ctccattgctggtgggattgcaaactggtacaactctgaaaatcaatatg
gaggttcctcagaaaattggaactacttctacctgaagaccagctctacc
acttgggaatatagccccaaaaatgctccaacatgccaacaggggcaagt
gcttcaatatgttcatagcagccttctttgtgatagctagaagatggaaa
caatacagatgtcccacaacataggaatggatacagaaaaagtggtttat
ttacaaaatgggaacaatacttagctattaagaagattgatataatgaga
attacggcaaattgatggagctaggaaaatattattttgggtgtgagtga
tgtaactcagacccaaatgacatgatggtatgtactcatggataagtgga
tgttagccaaaa
gaattcagatgtggaaatttcagataccatgactgcccatatcccaccat
gttccctgccatgaagttaatggactaaacctctgaaagtgcaagaaagt
ctcaattcagtgcactcttttataagagttgtcatggttatggtgtctcc
ttacagaaatagaacactgattaagaaactgggaatgacagcatgctgca
atactcccaacactttagaagtggaggatgaagaatcaggagttaaagtg
tatcctgggttatgataaaacatatagcaactttgaggctagcaaggagt
acatgggagcctgttttaaaaataataatagtaataaaatgactatttta
attaagttaactattatttattttacatacaataaaaaattcattttcaa
taatttataataggagaaggagttcatctaggggaattatttgagtccta
aattgctgaaggtggagttttaaaactagcagtatataaatactctgttg
tgctgagccagtctttttgtatatatgcaaaagctgtattttaaagggtt
ttaatttgtgtttaagggtggagtcttcctgagtagatattagagagctc
tcctaagctgaaatattgcacacctcttctgcatgggttatattttcata
aggaaaaacctccagtgagcaaattcttattcccttgaacttatcgttga
gataaaatgtagcaaatgattaattttataatagcacttgggtaggattc
actaacagtttacttcagtgctgtttttccccccactctacattttaatt
ttaatgaatttttgatcttgaagtagcttgacatctacagaaccatcatg
gcaatgacactgaaacttacgatggatttcatgcctggtcaccagctgta
aacttcttacctgagtatggaaaatctactcgaatttatgaacaaatttt
gatcaattattatttttaaaatggtgatttcttatactgtgaataaagaa
actaggtctagacagctgttgttgttattacttctacttttcaggaataa
taggaatgagtcattaagctattctctatgggaaactcgctttatatgaa
agt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105680761_105681304
seq2: B6Ng01-072C23.b_45_588 (reverse)

seq1  TCTTAGCCATTCTGATTGGTAAATGGTGAAATTTCATGGTCGTTTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCCATTCTGATTGGTAAATGGTGAAATTTCATGGTCGTTTTGATT  50

seq1  TGCAATTCCTGATCACTGAGGACACTAAACATTTCTTTAAGTGCTTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTCCTGATCACTGAGGACACTAAACATTTCTTTAAGTGCTTCTTA  100

seq1  GTCATTTGGTATAGCATTTTAGGACTATGGAATAGCTCTCTCAACCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTGGTATAGCATTTTAGGACTATGGAATAGCTCTCTCAACCCCAT  150

seq1  CTACATGTATCTGATGTATCAATCAAAATATTTTTAAAATTGCCTTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGTATCTGATGTATCAATCAAAATATTTTTAAAATTGCCTTAAAT  200

seq1  TATTACTTCCTTTGTTCTGTAAAACTACAAAGTATTCATGAAAGTGATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTCCTTTGTTCTGTAAAACTACAAAGTATTCATGAAAGTGATAC  250

seq1  CAAAATGGAACATGAGATTTGGTATAATCTATATCTGTTTACTTGGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGAACATGAGATTTGGTATAATCTATATCTGTTTACTTGGGCCA  300

seq1  TGGTCACTCATGATGTCACTTGAAAAAGCTCTTTTCCCCTTAGTATAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACTCATGATGTCACTTGAAAAAGCTCTTTTCCCCTTAGTATAAAC  350

seq1  CCTCTTATTTCCTTTAAGCTGTGGTCTGTATGTTTCCAAAACACTGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTATTTCCTTTAAGCTGTGGTCTGTATGTTTCCAAAACACTGTGAG  400

seq1  CTAGCAATTGTAACCATATTTATATATAAATTTCTAATGTGGGCCTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAATTGTAACCATATTTATATATAAATTTCTAATGTGGGCCTCCAG  450

seq1  TGGGCACATTTTTCTCTCAAATAATACTATTACTTTAAAAAATAGATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACATTTTTCTCTCAAATAATACTATTACTTTAAAAAATAGATATT  500

seq1  TGTTATATTCTGATAAATACTTGGCTCTGTAAGTGTCAGAATTC  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATTCTGATAAATACTTGGCTCTGTAAGTGTCAGAATTC  544

seq1: chr1_105542623_105543730
seq2: B6Ng01-072C23.g_67_1169

seq1  GAATTCAGATGTGGAAATTTCAGATACCATGACTGCCCATATCCCACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGTGGAAATTTCAGATACCATGACTGCCCATATCCCACCAT  50

seq1  GTTCCCTGCCATGAAGTTAATGGACTAAACCTCTGAAAGTGCAAGAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTGCCATGAAGTTAATGGACTAAACCTCTGAAAGTGCAAGAAAGT  100

seq1  CTCAATTCAGTGCACTCTTTTATAAGAGTTGTCATGGTTATGGTGTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTCAGTGCACTCTTTTATAAGAGTTGTCATGGTTATGGTGTCTCC  150

seq1  TTACAGAAATAGAACACTGATTAAGAAACTGGGAATGACAGCATGCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAATAGAACACTGATTAAGAAACTGGGAATGACAGCATGCTGCA  200

seq1  ATACTCCCAACACTTTAGAAGTGGAGGATGAAGAATCAGGAGTTAAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCCAACACTTTAGAAGTGGAGGATGAAGAATCAGGAGTTAAAGTG  250

seq1  TATCCTGGGTTATGATAAAACATATAGCAACTTTGAGGCTAGCAAGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGGGTTATGATAAAACATATAGCAACTTTGAGGCTAGCAAGGAGT  300

seq1  ACATGGGAGCCTGTTTTAAAAATAATAATAGTAATAAAATGACTATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGAGCCTGTTTTAAAAATAATAATAGTAATAAAATGACTATTTTA  350

seq1  ATTAAGTTAACTATTATTTATTTTACATACAATAAAAAATTCATTTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTAACTATTATTTATTTTACATACAATAAAAAATTCATTTTCAA  400

seq1  TAATTTATAATAGGAGAAGGAGTTCATCTAGGGGAATTATTTGAGTCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATAATAGGAGAAGGAGTTCATCTAGGGGAATTATTTGAGTCCTA  450

seq1  AATTGCTGAAGGTGGAGTTTTAAAACTAGCAGTATATAAATACTCTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGAAGGTGGAGTTTTAAAACTAGCAGTATATAAATACTCTGTTG  500

seq1  TGCTGAGCCAGTCTTTTTGTATATATGCAAAAGCTGTATTTTAAAGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCCAGTCTTTTTGTATATATGCAAAAGCTGTATTTTAAAGGGTT  550

seq1  TTAATTTGTGTTTAAGGGTGGAGTCTTCCTGAGTAGATATTAGAGAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGTGTTTAAGGGTGGAGTCTTCCTGAGTAGATATTAGAGAGCTC  600

seq1  TCCTAAGCTGAAATATTGCACACCTCTTCTGCATGGGTTATATTTTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGCTGAAATATTGCACACCTCTTCTGCATGGGTTATATTTTCATA  650

seq1  AGGAAAAACCTCCAGTGAGCAAATTCTTATTCCCTTGAACTTATCGTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAACCTCCAGTGAGCAAATTCTTATTCCCTTGAACTTATCGTTGA  700

seq1  GATAAAATGTAGCAAATGATTAATTTTATAATAGCACTTGGGTAGGATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATGTAGCAAATGATTAATTTTATAATAGCACTTGGGTAGGATTC  750

seq1  ACTAACAGTTTACTTCAGTGCTGTTTTTCCCCCCACTCTACATTTTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAGTTTACTTCAGTGCTGTTTTTCCCCCCACTCTACATTTTAATT  800

seq1  TTAATGAATTTTTGATCTTGAAGTAGCTTGACATCTACAGAACCATCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAATTTTTGATCTTGAAGTAGCTTGACATCTACAGAACCATCATG  850

seq1  GCAATGACACTGAAACTTACGATGGATTTCATGCCTGGTCACCAAGCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCAATGACACTGAAACTTACGATGGATTTCATGCCTGGTCACC-AGCTGT  899

seq1  AAACTTCTTACCTGAGTATGGAAAATCTACTCGAATTTATGAACAAATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTTACCTGAGTATGGAAAATCTACTCGAATTTATGAACAAATTT  949

seq1  TGATCAATTATTATTTTTAAAATGGTGATTTCTTATACTGTGGAATAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  TGATCAATTATTATTTTTAAAATGGTGATTTCTTATACTGT-GAAT-AAA  997

seq1  GAAACTAAGATCTAGACAGCTGTTGTGTTTATTAC-TCTACTTTTCAGGA  1049
      |||||| || ||||||||||||||||  ||||||| ||||||||||||||
seq2  GAAACT-AGGTCTAGACAGCTGTTGTTGTTATTACTTCTACTTTTCAGGA  1046

seq1  ATATCAGGATATGAGTCATTAAGCTATTCTCTATGGGAAA-TCGCTTTAT  1098
      |||  |||| |||||||||||||||||||||||||||||| |||||||||
seq2  ATAATAGGA-ATGAGTCATTAAGCTATTCTCTATGGGAAACTCGCTTTAT  1095

seq1  TAATGAAAGT  1108
        ||||||||
seq2  --ATGAAAGT  1103