BAC Information

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BAC

Clone NameB6Ng01-072E11
Chromosome1 (Build37)
Map Location 73,028,353 - 73,200,753
singlet/doubletdoublet
Overlap geneTnp1, 1700027A15Rik
Upstream geneEG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860
Downstream genePinc, LOC672208, LOC100043291, Tns1, Rufy4, Il8rb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072E11.bB6Ng01-072E11.g
ACCDH889739DH889740
length1,169696
definitionDH889739|Mus musculus domesticus DNA, BAC clone: B6Ng01-072E11, 5' end.DH889740|Mus musculus domesticus DNA, BAC clone: B6Ng01-072E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,199,580 - 73,200,753)(73,028,353 - 73,029,050)
sequence
gaattccatgggtattcatttgaaatgttagaagccttctgtatgaatcc
agactctccaaactcacagggaccaagctgagtctgctggaggatggctg
agactcagactccattggattccatagtataaaaaactgctaaagaggct
ttagcgacgaggaggcagaggatggacctcttaaggctccactgcagtta
actccactgagcatgaagcttcagccaaatgacccacagtgaacagtcca
gtactgagagtcttcttgccatgtttgtcagaaactggggcaatattgga
atagtgttcgttcttgtgtggagaagacaatgtttatctaaggggtaatt
atgtatggaatgcttgggtcacagttgtgctttttaatttcctgtttctt
ctccccttatttagtacgagtgtcaaggcttccagacaaggcttctttgg
tacttagaattattgggccacgaggcctgaatttgtgtctgattttcttg
cccaaccaaccagttcctagccccacctaccccaaaccactgttcttcat
tgttcttcggaaagaactcagcggcccgtgaacagctgtttccagggggc
tggccaagtggaaactgggacagagcccaggctgctctcttgtatgcact
caaatggtgggcctctggcaaatccaactgttactcgccagtgcaccctc
agctgaagcaccctcagctggagcacctcaagtgtcaccctatagcacca
tcttccacacccatccatgttatttctgttaggcaatcaagaagcctgtg
ctacacctaaccagatctagcctctcattttcatggcagggagaggcatc
tcttgctctaggaacatactatgacacacacacctttcttctcttcctac
aagaatgttcttcctatctctcagcaaagtttgtaatccatgaagtgatt
tgagatgaacctcccccacaaatgtagagtaagacttgaatatatgagca
ggacgcatgcacacacgggcttcttatttgcccctgactgtgcaaaacgc
agatggaaaacaagcagaatgaacatatattttcttaaatattttctccc
tttactttgccttcagtcgctattttcgacttctttcactctggaattaa
atattcttaagaattattt
gaattcattaggtacaaggtagtagtgtttattaagtacttcctttgtgc
ctgcttcagagaaccagagctgcaaagaaaacagaggaaggttaagaata
tcctctaacatcttagttttattctaagtgtggagatatatatatatata
tatatatatatatatatatatatatatacacacatacatacatatataca
tatatattctgtagattatatatatatatatatacacatacatacatata
tacatatatattctgtagattatatatatatatatatatatatatatata
tacatatatattctgtagatgatatagaaaaataagatgtagaaagcatt
ggaatagtaaaatatgggatctagaatgtattacaagaaatttaaggcaa
gggctactgcatcaaaggaatggttactgtagggtgctccagaggcccca
aactggatgacagaataggagtttctgtccaaaattgggcagcaagactg
ggagaagacttacttggcctcttaacttccttccctttgaacaaagactc
ttgagtcttcttgattcttgtcttaattagggtttctattgctgtgaaga
gacaccttgactaagaccactcttataaaggacaacatttaattgggggc
tggcttacagttcagagggctagtccattatcatcaggaaggaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_73199580_73200753
seq2: B6Ng01-072E11.b_44_1212 (reverse)

seq1  AAATAATACTTAAGAATATTTATATTCAGAGTG-AAGAAGTCGAAAATAG  49
      ||||||| ||||||||||||||  | ||||||| ||||||||||||||||
seq2  AAATAATTCTTAAGAATATTTAATTCCAGAGTGAAAGAAGTCGAAAATAG  50

seq1  CGACTGAAGGCAAAGTAAAAGGGAGAAAATATTTAAGAAAATATATGTTC  99
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CGACTGAAGGCAAAGT-AAAGGGAGAAAATATTTAAGAAAATATATGTTC  99

seq1  ATTTCTGCTTTGTTTTTCCATCTGCGTTTTTGCACAGTCAGTGTGCAAAT  149
      | ||||||||   ||||||||||||| |||||||||||||| | ||||||
seq2  A-TTCTGCTT--GTTTTCCATCTGCG-TTTTGCACAGTCAG-GGGCAAAT  144

seq1  AAG-AGCCCGTGTGTGCATGCGTCCTGCTCATATATTCAAGTTCTTACTC  198
      ||| ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAGAAGCCCGTGTGTGCATGCGTCCTGCTCATATATTCAAG-TCTTACTC  193

seq1  TACATTTGTGGGGGAGGTTCATCTTCAAATCACTTCATGGATTACAAACT  248
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TACATTTGTGGGGGAGGTTCATC-TCAAATCACTTCATGGATTACAAACT  242

seq1  TTGCTGAGAGATAGGAAGAACATTCTTGTAGGAAGAGAAGAAAGGTGTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGAGATAGGAAGAACATTCTTGTAGGAAGAGAAGAAAGGTGTGT  292

seq1  GTGTCAATAGTATGTTCCTAGAGCAAGAGATGCCTCTCCCTGCCATG-AA  347
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGTC-ATAGTATGTTCCTAGAGCAAGAGATGCCTCTCCCTGCCATGAAA  341

seq1  ATGAGAGGCTAGATCTGGTTAGGTGTAGCACAGGCTTCTTGATTGCCTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGGCTAGATCTGGTTAGGTGTAGCACAGGCTTCTTGATTGCCTAA  391

seq1  CAG-AATAACATGGATGGGTGTGGAAGATGGTGCTATAGGGTGACACTTG  446
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAACATGGATGGGTGTGGAAGATGGTGCTATAGGGTGACACTTG  441

seq1  AGGTGCTCCAGCTGAGGGTGCTTCAGCTGAGGGTGCACTGGCGAGTAACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTCCAGCTGAGGGTGCTTCAGCTGAGGGTGCACTGGCGAGTAACA  491

seq1  GTTGGATTTGCCAGAGGCCCACCATTTGAGTGCATACAAGAGAGCAGCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATTTGCCAGAGGCCCACCATTTGAGTGCATACAAGAGAGCAGCCT  541

seq1  GGGCTCTGTCCCAGTTTCCACTTGGCCAGCCCCCTGGAAACAGCTGTTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGTCCCAGTTTCCACTTGGCCAGCCCCCTGGAAACAGCTGTTCA  591

seq1  CGGGCCGCTGAGTTCTTTCCGAAGAACAATGAAGAACAGTGGTTTGGGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCGCTGAGTTCTTTCCGAAGAACAATGAAGAACAGTGGTTTGGGGT  641

seq1  AGGTGGGGCTAGGAACTGGTTGGTTGGGCAAGAAAATCAGACACAAATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGCTAGGAACTGGTTGGTTGGGCAAGAAAATCAGACACAAATTC  691

seq1  AGGCCTCGTGGCCCAATAATTCTAAGTACCAAAGAAGCCTTGTCTGGAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCGTGGCCCAATAATTCTAAGTACCAAAGAAGCCTTGTCTGGAAG  741

seq1  CCTTGACACTCGTACTAAATAAGGGGAGAAGAAACAGGAAATTAAAAAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACACTCGTACTAAATAAGGGGAGAAGAAACAGGAAATTAAAAAGC  791

seq1  ACAACTGTGACCCAAGCATTCCATACATAATTACCCCTTAGATAAACATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTGACCCAAGCATTCCATACATAATTACCCCTTAGATAAACATT  841

seq1  GTCTTCTCCACACAAGAACGAACACTATTCCAATATTGCCCCAGTTTCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCCACACAAGAACGAACACTATTCCAATATTGCCCCAGTTTCTG  891

seq1  ACAAACATGGCAAGAAGACTCTCAGTACTGGACTGTTCACTGTGGGTCAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATGGCAAGAAGACTCTCAGTACTGGACTGTTCACTGTGGGTCAT  941

seq1  TTGGCTGAAGCTTCATGCTCAGTGGAGTTAACTGCAGTGGAGCCTTAAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGAAGCTTCATGCTCAGTGGAGTTAACTGCAGTGGAGCCTTAAGA  991

seq1  GGTCCATCCTCTGCCTCCTCGTCGCTAAAGCCTCTTTAGCAGTTTTTTAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATCCTCTGCCTCCTCGTCGCTAAAGCCTCTTTAGCAGTTTTTTAT  1041

seq1  ACTATGGAATCCAATGGAGTCTGAGTCTCAGCCATCCTCCAGCAGACTCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGAATCCAATGGAGTCTGAGTCTCAGCCATCCTCCAGCAGACTCA  1091

seq1  GCTTGGTCCCTGTGAGTTTGGAGAGTCTGGATTCATACAGAAGGCTTCTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTCCCTGTGAGTTTGGAGAGTCTGGATTCATACAGAAGGCTTCTA  1141

seq1  ACATTTCAAATGAATACCCATGGAATTC  1174
      ||||||||||||||||||||||||||||
seq2  ACATTTCAAATGAATACCCATGGAATTC  1169

seq1: chr1_73028353_73029050
seq2: B6Ng01-072E11.g_73_768

seq1  GAATTCATTAGGTACAAGGTAGTAGTGTTTATTAAGTACTTCCTTTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGTACAAGGTAGTAGTGTTTATTAAGTACTTCCTTTGTGC  50

seq1  CTGCTTCAGAGAACCAGAGCTGCAAAGAAAACAGAGGAAGGTTAAGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCAGAGAACCAGAGCTGCAAAGAAAACAGAGGAAGGTTAAGAATA  100

seq1  TCCTCTAACATCTTAGTTTTATTCTAAGTGTGGAGATATATATATATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAACATCTTAGTTTTATTCTAAGTGTGGAGATATATATATATATA  150

seq1  TATATATATATATATATATATATATATACACACATACATACATATATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATACACACATACATACATATATACA  200

seq1  TATATATTCTGTAGATTATATATATATATATATACACATACATACATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTCTGTAGATTATATATATATATATATACACATACATACATATA  250

seq1  TACATATATATTCTGTAGATTATATATATATATATATATATATATATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATATTCTGTAGATTATATATATATATATATATATATATATATA  300

seq1  TACATATATATTCTGTAGATGATATAGAAAAATAAGATGTAGAAAGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATATTCTGTAGATGATATAGAAAAATAAGATGTAGAAAGCATT  350

seq1  GGAATAGTAAAATATGGGATCTAGAATGTATTACAAGAAATTTAAGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGTAAAATATGGGATCTAGAATGTATTACAAGAAATTTAAGGCAA  400

seq1  GGGCTACTGCATCAAAGGAATGGTTACTGTAGGGTGCTCCAGAGGCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACTGCATCAAAGGAATGGTTACTGTAGGGTGCTCCAGAGGCCCCA  450

seq1  AACTGGATGACAGAATAGGAGTTTCTGTCCAAAATTGGGCAGCAAGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGATGACAGAATAGGAGTTTCTGTCCAAAATTGGGCAGCAAGACTG  500

seq1  GGAGAAGACTTACTTGGCCTCTTAACTTCCTTCCCTTTGAACAAAAGACT  550
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAGAAGACTTACTTGGCCTCTTAACTTCCTTCCCTTTGAAC-AAAGACT  549

seq1  CTTGAGTCTTCTTGATTCTTGTCTTAATTAGGGTTTCTATTGCTGTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTCTTCTTGATTCTTGTCTTAATTAGGGTTTCTATTGCTGTGAAG  599

seq1  AGACACCATGACTAAGACCACTCTTATAAAGGACAACATTTAATT-GGGG  649
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  AGACACCTTGACTAAGACCACTCTTATAAAGGACAACATTTAATTGGGGG  649

seq1  CTGGCTTACAGTTTCAGAGGGCTAGTCCATTATCATCAAGGAAGGAACA  698
      ||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  CTGGCTTACAG-TTCAGAGGGCTAGTCCATTATCATC-AGGAAGGAACA  696