BAC Information

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BAC

Clone NameB6Ng01-072F14
Chromosome1 (Build37)
Map Location 88,245,792 - 88,343,381
singlet/doubletdoublet
Overlap geneNcl, Snord82, Nmur1, 1700019O17Rik
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538
Downstream geneLOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072F14.bB6Ng01-072F14.g
ACCDH889790DH889791
length1,0991,006
definitionDH889790|Mus musculus domesticus DNA, BAC clone: B6Ng01-072F14, 5' end.DH889791|Mus musculus domesticus DNA, BAC clone: B6Ng01-072F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,245,792 - 88,246,900)(88,342,375 - 88,343,381)
sequence
gaattccttagcctcaaattggtctgccttctaggattaatgacagctga
gtgccttcagctacatgccattaatctttaacaaggaggttaacataatc
aagggctccactccccacagcaaaagaacccaccaaactgttccctgcta
cacaaatctaatgcccacgccatcctcacttttagacaggactgcgactg
caatggtcataccacatactcaagccaccagacaggtgctaagcgcaacc
ctacagagggtctttggttgagaatagctgactggtctttcttgaaaatc
agtttgttgggagtgggacttggaaaaacacctacaggaaagtttctatt
aaggttatctaggcacccatgccttatacaaaacaaacaaaaaacaaaaa
aaccaaacatccttgatagatcactgaaaaattcattaagtacacaggcc
aagggccactgtattatccctagttaaactggacctctgacaacctttaa
gtcaaaaaggccactgttccctctgttggaacttacaaaccttgtttccc
aaagcttctctcaaatttgacaggtcttgttttttttttcaagacaaagt
ttctaagtatccctcactatccagcaactcagttctgcagacccaactgg
cattgaagtcatagactgctttagcctcccatgggattggattacgtcac
tcccagcttgctgctgagacttggtactcagtggctaaaactctgtattt
ggttgtctgtgaggtttttttttcttgttttttcaagacagggttttttc
tctaataaacagccctggctgttctggaactctctgtacaccagatcaaa
ctcagatctaccagcctctccctcccaagtgctggggttaaaggcatgtg
caaccatcctggctatgtgaattttcaacccaatggggtaccattccttg
tccaggtcatttcagattgcactgtactgtttgtcttattatgctgggat
agattacatacacacagctcttgtatggtatttccagcactgatcatgtg
ctctatcaccactttccagtaaacacccttctaagaatacaataaatct
gaattcaaagacgaagtggttgaactctcgttccaggaggaaccagtgcc
ctcttgtgacctccacaggttccaggcatgcatatggtacggtacacata
tgtacatgcaggcaaaacacccatatacataaaataaacatacctataaa
taaataggagaggaaagatctgggctaggtattttgcaaggctacaaagt
atggccaaggctgaggtcctagctaaagatccactagagagctgggtggt
agcacctgcctttaatcccagcactggaaggtagagtaaaggcaggtgga
tatctacgaacctggtctacagctagttcctggacagtcaaggctacaaa
aagaaaacctgtctcgaaataacaataaaagatcctctggggaaagaaaa
gtttctaatctcaggactgtaggcagaatttagtacaggcttttaggctt
ttgtttgctttcttccccccaagccctgacctcctttggtttgtttgaga
cagggtctttctccatagctctggcttttctggcactcactatgtagaac
aggctggctttaaacacagaaatccatctgcctctgcctcccgagtgctg
ggatcaagggagtgtcaccacgcccagctcctgtgagccaccttccaaac
cctggaccctgggccagtttcctgtctggtggtagctggacctttattaa
catgactacattttgttcaaagaccaagcctcacgtctctgtcctcgatc
tcactctgtagccaaggatgaccctgcactgttgaatttgctttgtcttc
ccaagtgctgcgattgtgcgtctttgccacactggctctctagctggtgt
tctggtgtctttgccacagggccttcagcacacacgagcagcttgttctt
ttaacacaagcagggacgaagtagcctagcaaaactgtcctcacagtcta
gtaagtgacacaatcacctttgcagtattctttttttttgtttttttttt
tttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88245792_88246900
seq2: B6Ng01-072F14.b_44_1142

seq1  GAATTCCTTAGCCTCAAATTGGTCTGCCTTCTAGGATTAATGACAGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGCCTCAAATTGGTCTGCCTTCTAGGATTAATGACAGCTGA  50

seq1  GTGCCTTCAGCTACATGCCATTAATCTTTAACAAGGAGGTTAACATAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTCAGCTACATGCCATTAATCTTTAACAAGGAGGTTAACATAATC  100

seq1  AAGGGCTCCACTCCCCACAGCAAAAGAACCCACCAAACTGTTCCCTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTCCACTCCCCACAGCAAAAGAACCCACCAAACTGTTCCCTGCTA  150

seq1  CACAAATCTAATGCCCACGCCATCCTCACTTTTAGACAGGACTGCGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATCTAATGCCCACGCCATCCTCACTTTTAGACAGGACTGCGACTG  200

seq1  CAATGGTCATACCACATACTCAAGCCACCAGACAGGTGCTAAGCGCAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTCATACCACATACTCAAGCCACCAGACAGGTGCTAAGCGCAACC  250

seq1  CTACAGAGGGTCTTTGGTTGAGAATAGCTGACTGGTCTTTCTTGAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGGGTCTTTGGTTGAGAATAGCTGACTGGTCTTTCTTGAAAATC  300

seq1  AGTTTGTTGGGAGTGGGACTTGGAAAAACACCTACAGGAAAGTTTCTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTGGGAGTGGGACTTGGAAAAACACCTACAGGAAAGTTTCTATT  350

seq1  AAGGTTATCTAGGCACCCATGCCTTATACAAAACAAACAAAAAACAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTATCTAGGCACCCATGCCTTATACAAAACAAACAAAAAACAAAAA  400

seq1  AACCAAACATCCTTGATAGATCACTGAAAAATTCATTAAGTACACAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACATCCTTGATAGATCACTGAAAAATTCATTAAGTACACAGGCC  450

seq1  AAGGGCCACTGTATTATCCCTAGTTAAACTGGACCTCTGACAACCTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCACTGTATTATCCCTAGTTAAACTGGACCTCTGACAACCTTTAA  500

seq1  GTCAAAAAGGCCACTGTTCCCTCTGTTGGAACTTACAAACCTTGTTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAAGGCCACTGTTCCCTCTGTTGGAACTTACAAACCTTGTTTCCC  550

seq1  AAAGCTTCTCTCAAATTTGACAGGTCTTGTTTTTTTTTTCAAGACAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCTCTCAAATTTGACAGGTCTTGTTTTTTTTTTCAAGACAAAGT  600

seq1  TTCTAAGTATCCCTCACTATCCAGCAACTCAGTTCTGCAGACCCAACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTATCCCTCACTATCCAGCAACTCAGTTCTGCAGACCCAACTGG  650

seq1  CATTGAAGTCATAGACTGCTTTAGCCTCCCATGGGATTGGATTACGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGTCATAGACTGCTTTAGCCTCCCATGGGATTGGATTACGTCAC  700

seq1  TCCCAGCTTGCTGCTGAGACTTGGTACTCAGTGGCTAAAACTCTGTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCTTGCTGCTGAGACTTGGTACTCAGTGGCTAAAACTCTGTATTT  750

seq1  GGTTGTCTGTGAGGTTTTTTTTTCTTGTTTTTTCAAGACAGGGTTTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCTGTGAGGTTTTTTTTTCTTGTTTTTTCAAGACAGGGTTTTTTC  800

seq1  TCTAATAAACAGCCCTGGCTGTTCTGGAACTCTCTGTACACCAGATCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAACAGCCCTGGCTGTTCTGGAACTCTCTGTACACCAGATCAAA  850

seq1  CTCAGATCTACCAGCCTCTCCCTCCCAAGTGCTGGGGTTAAAGGCATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATCTACCAGCCTCTCCCTCCCAAGTGCTGGGGTTAAAGGCATGTG  900

seq1  CAACCATCCTGGCTATGTGAATTTTTCAACCCAATGGGGTACCATTCCTT  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAACCATCCTGGCTATGTGAA-TTTTCAACCCAATGGGGTACCATTCCTT  949

seq1  GTCCAGGTCATTTCAGATTGCACTGTACTGTTTGTTCTTATTATGCTGGG  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTCCAGGTCATTTCAGATTGCACTGTACTGTTTG-TCTTATTATGCTGGG  998

seq1  AATAGAATTACATACCACACAAGCTCTTGTATGGTATTTCCAGCACTGAT  1050
       |||| |||||||| ||||| |||||||||||||||||||||||||||||
seq2  -ATAG-ATTACATA-CACAC-AGCTCTTGTATGGTATTTCCAGCACTGAT  1044

seq1  CCATGTGCTCTATCAACCACTTTTCCAGTACACACCCTTCTAAG-ATACA  1099
       ||||||||||||| ||||| ||||||||| ||||||||||||| |||||
seq2  -CATGTGCTCTATC-ACCAC-TTTCCAGTAAACACCCTTCTAAGAATACA  1091

seq1  AATTAAATCT  1109
      |  |||||||
seq2  A--TAAATCT  1099

seq1: chr1_88342375_88343381
seq2: B6Ng01-072F14.g_70_1075 (reverse)

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAGAATACTGCAAAGGTGATTGTGTC  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAACAAAAAAAAAGAATACTGCAAAGGTGATTGTGTC  50

seq1  ACTTACTAGACTGTGAGGACAGTTTTGCTAGGCTACCTTCGTCCCTGCTT  100
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTTACTAGACTGTGAGGACAGTTTTGCTAGGCTA-CTTCGTCCCTGCTT  99

seq1  GTGTTAAAAGAACAAGCTGCTCGTGTGTGCTGAAGGCCCTGTGGCAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAAAGAACAAGCTGCTCGTGTGTGCTGAAGGCCCTGTGGCAAAGA  149

seq1  CACCAGAACACCAGCTAGAGAGCCAGTGTGGCAAAGACGCACAATCGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAACACCAGCTAGAGAGCCAGTGTGGCAAAGACGCACAATCGCAG  199

seq1  CACTTGGGAAGACAAAGCAAATTCAACAGTGCAGGGTCATCCTTGGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGAAGACAAAGCAAATTCAACAGTGCAGGGTCATCCTTGGCTAC  249

seq1  AGAGTGAGATCGAGGACAGAGACGTGAGGCTTGGTCTTTGAACAAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGATCGAGGACAGAGACGTGAGGCTTGGTCTTTGAACAAAATGT  299

seq1  AGTCATGTTAATAAAGGTCCAGCTACCACCAGACAGGAAACTGGCCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTTAATAAAGGTCCAGCTACCACCAGACAGGAAACTGGCCCAGG  349

seq1  GTCCAGGGTTTGGAAGGTGGCTCACAGGAGCTGGGCGTGGTGACACTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGGTTTGGAAGGTGGCTCACAGGAGCTGGGCGTGGTGACACTCCC  399

seq1  TTGATCCCAGCACTCGGGAGGCAGAGGCAGATGGATTTCTGTGTTTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCCAGCACTCGGGAGGCAGAGGCAGATGGATTTCTGTGTTTAAAG  449

seq1  CCAGCCTGTTCTACATAGTGAGTGCCAGAAAAGCCAGAGCTATGGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGTTCTACATAGTGAGTGCCAGAAAAGCCAGAGCTATGGAGAAA  499

seq1  GACCCTGTCTCAAACAAACCAAAGGAGGTCAGGGCTTGGGGGGAAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTCTCAAACAAACCAAAGGAGGTCAGGGCTTGGGGGGAAGAAAG  549

seq1  CAAACAAAAGCCTAAAAGCCTGTACTAAATTCTGCCTACAGTCCTGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAGCCTAAAAGCCTGTACTAAATTCTGCCTACAGTCCTGAGAT  599

seq1  TAGAAACTTTTCTTTCCCCAGAGGATCTTTTATTGTTATTTCGAGACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTTTTCTTTCCCCAGAGGATCTTTTATTGTTATTTCGAGACAGG  649

seq1  TTTTCTTTTTGTAGCCTTGACTGTCCAGGAACTAGCTGTAGACCAGGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTGTAGCCTTGACTGTCCAGGAACTAGCTGTAGACCAGGTTC  699

seq1  GTAGATATCCACCTGCCTTTACTCTACCTTCCAGTGCTGGGATTAAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATATCCACCTGCCTTTACTCTACCTTCCAGTGCTGGGATTAAAGGC  749

seq1  AGGTGCTACCACCCAGCTCTCTAGTGGATCTTTAGCTAGGACCTCAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTACCACCCAGCTCTCTAGTGGATCTTTAGCTAGGACCTCAGCCT  799

seq1  TGGCCATACTTTGTAGCCTTGCAAAATACCTAGCCCAGATCTTTCCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATACTTTGTAGCCTTGCAAAATACCTAGCCCAGATCTTTCCTCTC  849

seq1  CTATTTATTTATAGGTATGTTTATTTTATGTATATGGGTGTTTTGCCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATTTATAGGTATGTTTATTTTATGTATATGGGTGTTTTGCCTGC  899

seq1  ATGTACATATGTGTACCGTACCATATGCATGCCTGGAACCTGTGGAGGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATATGTGTACCGTACCATATGCATGCCTGGAACCTGTGGAGGTC  949

seq1  ACAAGAGGGCACTGGTTCCTCCTGGAACGAGAGTTCAACCACTTCGTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGGCACTGGTTCCTCCTGGAACGAGAGTTCAACCACTTCGTCTT  999

seq1  TGAATTC  1007
      |||||||
seq2  TGAATTC  1006