BAC Information

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BAC

Clone NameB6Ng01-072G09
Chromosome1 (Build37)
Map Location 138,928,464 - 139,085,987
singlet/doubletdoublet
Overlap geneLOC100042567
Upstream geneTmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3
Downstream geneLOC100043143, Ptprc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072G09.bB6Ng01-072G09.g
ACCDH889828DH889829
length1,1351,055
definitionDH889828|Mus musculus domesticus DNA, BAC clone: B6Ng01-072G09, 5' end.DH889829|Mus musculus domesticus DNA, BAC clone: B6Ng01-072G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,084,857 - 139,085,987)(138,928,464 - 138,929,527)
sequence
gaattcaagtcatttacttctcttccagaggacccaagttcagttcccag
tgccaactccagctccaggagatccaacacaaccagtctctctaggcacc
tacacacacatgcacataaccagaggtacacatgcatacaagcacacaca
tatacacacctacatatgatttaaaacaataaaaccatatgtttaaaaaa
tgaggcttccttttaattggagcaaggacagactcacaaagcatgaagag
aaatcagaaagaacaatagctacatttagttgccctgcttcattataaag
ttagcataacaaggagatgtggagagaatcatgtctcttgccccggaagc
tgggtcaatcattattcatacacaagacaattaaaagctgacagaacaac
taactatgttttaaactgtaatttcaagtagattgtaaatgctcatttga
aggatagacctatgaaggatttaaaataaaatatagatcttagagtagaa
atttttaaaaagaaaaactagagcacaggccttctattgttctgagaaaa
tgggtaaacgaaacaactgaatagaaagcatctatctgctctttcaaaac
tatatttcaaagtataaaaactgatcctaaaatggggaaagatttacaaa
cacaaacagcttcaaaggtttgtatttagaatatataaatagaagtttaa
aatctggaagaaaggggctcaggagatggttcagtggatagagcagttgc
cctgtaatacagaaaacagaaatcagaatcccagaatccataagaaagac
aggtaagctggcagctgtctcacctcttagaatgcagacaggggtgccta
aagcaagctgcccagctagactagcagaactagagagctctctagctgct
agagagactatacctcaataaataatgcagagggttatcaacgatgatac
ttgatgtcagcttcaggtctctgcagcatgctcacacgtgcccacaaccc
ccaacatacgcaagtgccttcatacaagtgaacattcaccacaaaacata
ttttgaactctaaacttaatcattaagaaaaataaacagaacttcttata
aaaaataataaaaacaaagaagaaacttgaacagg
gaattctgatgaccttcggttgtagcctccacggttgtactgatgggaac
actcaccctataagttaaagcgagaggatggccatgtttacatactgggg
gcagctgtgctttggcaaggatgggccaggcgagcatcatcgctcctatc
ttttcccaaacactgaagggatgaggtgaatgtgacctcagttttctcca
atttagttctgctgaggatatggggctaagggtctcagcaaaggcggctt
ttaatctgaatgtaatcgctcttcagactcatccattacgtcactgacgt
tccccgtgggcatgctcagcatcgtctgttatgttatcccctcagctacc
ctaccactaacggcattgtgaccaagattcaccatttatggctttctggc
aatagcagtagggaaggaactggaagagatgaatgttagagatactttga
gaactgagtaaaatgtccttcccctctctgccctgagcagttttttcttc
acagtctcctcagccatcttccctgatttacagtaacacggatctctgtg
catctgcctgcctgtctgtttctctaactcgttccttttcttgagattag
gggacttgtcttgtagtccaggttggccttgaacttatggcaatctttct
gctacagcttttgaagtcctgggattacctcgttcagcatcacggtcctt
accttcctcagcttcaacagtctttgaagcttgcctgatggaaatgctat
accttctgtcaagaacaggggaaggtctccatagatcttatttgcaggat
gaaatgaagtagatcaatcacattttgggtggttaagataatgtttagga
tgggcagtgctcgtcctcatttgctgtaatgtcttcctctgtgtctattg
tcactgaagaccatcacatcctttgctgccagagtcttttaatgaatatc
tcatatattgctttctcagactcaacaagattgcctctgcctcctgttta
aaattatggtttaatgacttagaatgcttttgtaacactgaaaccaaaat
aaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_139084857_139085987
seq2: B6Ng01-072G09.b_45_1179 (reverse)

seq1  CCTGTTCAAGTTTC-TCTTTGTTTTATTAATTTTTTATAAGAGTTTCTGT  49
      |||||||||||||| ||||||||||  | |||||||||||||  ||||||
seq2  CCTGTTCAAGTTTCTTCTTTGTTTTTATTATTTTTTATAAGAAGTTCTGT  50

seq1  T--ATTTTCTTAATGATTAAGTTTTAGAGTTC-AAATATG-TATGT-GTG  94
      |   ||||||||||||||||| |||||||||| ||||||| | ||| |||
seq2  TTATTTTTCTTAATGATTAAG-TTTAGAGTTCAAAATATGTTTTGTGGTG  99

seq1  AATGTTCACTTGTATGAAGGCACTTGCGTATG-TGGGGGTTGTGGGCACG  143
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATGTTCACTTGTATGAAGGCACTTGCGTATGTTGGGGGTTGTGGGCACG  149

seq1  TGTGAGCATGCTTGCAGAGACCTGAAGCTGACATCAAGTATCATCGTTGA  193
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCATGC-TGCAGAGACCTGAAGCTGACATCAAGTATCATCGTTGA  198

seq1  TAACCCTCTGCATTATTTATTGAGGTATAGTCTCTCTAGCAGCTAGAGAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTCTGCATTATTTATTGAGGTATAGTCTCTCTAGCAGCTAGAGAG  248

seq1  CTCTCTAGTTCCTGCTAGTCTAGCTGGGCAGCTTGCCTTAGGCACCCCTG  293
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  CTCTCTAGTT-CTGCTAGTCTAGCTGGGCAGCTTGCTTTAGGCACCCCTG  297

seq1  TCTGCATTCTAAGAGGTGAGACAGCTGCCAGCTTACCTGTCTTTCTTATG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTCTAAGAGGTGAGACAGCTGCCAGCTTACCTGTCTTTCTTATG  347

seq1  GATTCTGGGATTCTGATTTCTGTTTTCTGTATTACAGGGCAACTGCTCTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGGGATTCTGATTTCTGTTTTCTGTATTACAGGGCAACTGCTCTA  397

seq1  TCCACTGAACCATCTCCTGAGCCCCTTTCTTCCAGATTTTAAACTTCTAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGAACCATCTCCTGAGCCCCTTTCTTCCAGATTTTAAACTTCTAT  447

seq1  TTATATATTCTAAATACAAACCTTTGAAGCTGTTTGTGTTTGTAAATCTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTCTAAATACAAACCTTTGAAGCTGTTTGTGTTTGTAAATCTT  497

seq1  TCCCCATTTTAGGATCAGTTTTTATACTTTGAAATATAGTTTTGAAAGAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATTTTAGGATCAGTTTTTATACTTTGAAATATAGTTTTGAAAGAG  547

seq1  CAGATAGATGCTTTCTATTCAGTTGTTTCGTTTACCCATTTTCTCAGAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGATGCTTTCTATTCAGTTGTTTCGTTTACCCATTTTCTCAGAAC  597

seq1  AATAGAAGGCCTGTGCTCTAGTTTTTCTTTTTAAAAATTTCTACTCTAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGGCCTGTGCTCTAGTTTTTCTTTTTAAAAATTTCTACTCTAAG  647

seq1  ATCTATATTTTATTTTAAATCCTTCATAGGTCTATCCTTCAAATGAGCAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATTTTATTTTAAATCCTTCATAGGTCTATCCTTCAAATGAGCAT  697

seq1  TTACAATCTACTTGAAATTACAGTTTAAAACATAGTTAGTTGTTCTGTCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATCTACTTGAAATTACAGTTTAAAACATAGTTAGTTGTTCTGTCA  747

seq1  GCTTTTAATTGTCTTGTGTATGAATAATGATTGACCCAGCTTCCGGGGCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAATTGTCTTGTGTATGAATAATGATTGACCCAGCTTCCGGGGCA  797

seq1  AGAGACATGATTCTCTCCACATCTCCTTGTTATGCTAACTTTATAATGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATGATTCTCTCCACATCTCCTTGTTATGCTAACTTTATAATGAA  847

seq1  GCAGGGCAACTAAATGTAGCTATTGTTCTTTCTGATTTCTCTTCATGCTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCAACTAAATGTAGCTATTGTTCTTTCTGATTTCTCTTCATGCTT  897

seq1  TGTGAGTCTGTCCTTGCTCCAATTAAAAGGAAGCCTCATTTTTTAAACAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCTGTCCTTGCTCCAATTAAAAGGAAGCCTCATTTTTTAAACAT  947

seq1  ATGGTTTTATTGTTTTAAATCATATGTAGGTGTGTATATGTGTGTGCTTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTATTGTTTTAAATCATATGTAGGTGTGTATATGTGTGTGCTTG  997

seq1  TATGCATGTGTACCTCTGGTTATGTGCATGTGTGTGTAGGTGCCTAGAGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATGTGTACCTCTGGTTATGTGCATGTGTGTGTAGGTGCCTAGAGA  1047

seq1  GACTGGTTGTGTTGGATCTCCTGGAGCTGGAGTTGGCACTGGGAACTGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTTGTGTTGGATCTCCTGGAGCTGGAGTTGGCACTGGGAACTGAA  1097

seq1  CTTGGGTCCTCTGGAAGAGAAGTAAATGACTTGAATTC  1131
      ||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTCCTCTGGAAGAGAAGTAAATGACTTGAATTC  1135

seq1: chr1_138928464_138929527
seq2: B6Ng01-072G09.g_70_1124

seq1  GAATTCTGATGACCTTCGGTTGTAGCCTCCACGGTTGTACTGATGGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGACCTTCGGTTGTAGCCTCCACGGTTGTACTGATGGGAAC  50

seq1  ACTCACCCTATAAGTTAAAGCGAGAGGATGGCCATGTTTACATACTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCCTATAAGTTAAAGCGAGAGGATGGCCATGTTTACATACTGGGG  100

seq1  GCAGCTGTGCTTTGGCAAGGATGGGCCAGGCGAGCATCATCGCTCCTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGTGCTTTGGCAAGGATGGGCCAGGCGAGCATCATCGCTCCTATC  150

seq1  TTTTCCCAAACACTGAAGGGATGAGGTGAATGTGACCTCAGTTTTCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAAACACTGAAGGGATGAGGTGAATGTGACCTCAGTTTTCTCCA  200

seq1  ATTTAGTTCTGCTGAGGATATGGGGCTAAGGGTCTCAGCAAAGGCGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTCTGCTGAGGATATGGGGCTAAGGGTCTCAGCAAAGGCGGCTT  250

seq1  TTAATCTGAATGTAATCGCTCTTCAGACTCATCCATTACGTCACTGACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTGAATGTAATCGCTCTTCAGACTCATCCATTACGTCACTGACGT  300

seq1  TCCCCGTGGGCATGCTCAGCATCGTCTGTTATGTTATCCCCTCAGCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGTGGGCATGCTCAGCATCGTCTGTTATGTTATCCCCTCAGCTACC  350

seq1  CTACCACTAACGGCATTGTGACCAAGATTCACCATTTATGGCTTTCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTAACGGCATTGTGACCAAGATTCACCATTTATGGCTTTCTGGC  400

seq1  AATAGCAGTAGGGAAGGAACTGGAAGAGATGAATGTTAGAGATACTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGTAGGGAAGGAACTGGAAGAGATGAATGTTAGAGATACTTTGA  450

seq1  GAACTGAGTAAAATGTCCTTCCCCTCTCTGCCCTGAGCAGTTTTTTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAGTAAAATGTCCTTCCCCTCTCTGCCCTGAGCAGTTTTTTCTTC  500

seq1  ACAGTCTCCTCAGCCATCTTCCCTGATTTACAGTAACACGGATCTCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTCCTCAGCCATCTTCCCTGATTTACAGTAACACGGATCTCTGTG  550

seq1  CATCTGCCTGCCTGTCTGTTTCTCTAACTCGTTCCTTTTCTTGAGATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCTGCCTGTCTGTTTCTCTAACTCGTTCCTTTTCTTGAGATTAG  600

seq1  GGGACTTGTCTTGTAGTCCAGGTTGGCCTTGAACTTATGGCAATCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTGTCTTGTAGTCCAGGTTGGCCTTGAACTTATGGCAATCTTTCT  650

seq1  GCTACAGCTTTTGAAGTCCTGGGATTACCTCGTTCAGCATCACGGTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGCTTTTGAAGTCCTGGGATTACCTCGTTCAGCATCACGGTCCTT  700

seq1  ACCTTCCTCAGCTTCAACAGTCTTTGAAGCTTGCCTGATGGAAATGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCTCAGCTTCAACAGTCTTTGAAGCTTGCCTGATGGAAATGCTAT  750

seq1  ACCTTCTGTCAAGAACAGGGGAAGGTCTCCATAGATCTTATTTGCAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGTCAAGAACAGGGGAAGGTCTCCATAGATCTTATTTGCAGGAT  800

seq1  GAAATGAAGTAGATCAATCACATTTTGGTTGGTTAAGATAATGTTTAGGA  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAAATGAAGTAGATCAATCACATTTTGGGTGGTTAAGATAATGTTTAGGA  850

seq1  TGGGCAGTGCTTCGTCCTCATTTGCTGTAATGTCTTTCCTCTGTGTCTAT  900
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  TGGGCAGTGC-TCGTCCTCATTTGCTGTAATGTC-TTCCTCTGTGTCTAT  898

seq1  TGTCACTGAAGACCATCACATCCTTTGCTGCCAGAGTCTTTTAATGAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGAAGACCATCACATCCTTTGCTGCCAGAGTCTTTTAATGAATA  948

seq1  TCTTCATATATTGTCTTTCTCAGACTCAGACAAGAATGGCTCTGCCTTCC  1000
      || |||||||||| |||||||||||||| |||||| || ||||||| |||
seq2  TC-TCATATATTG-CTTTCTCAGACTCA-ACAAGATTGCCTCTGCC-TCC  994

seq1  TGTTTTAAAAATTATGGTTTTAATGACTTAGAATGCTTTTGTAAACATGA  1050
      |||||  |||||||||| ||||||||||||||||||||||||||   |||
seq2  TGTTT--AAAATTATGG-TTTAATGACTTAGAATGCTTTTGTAACACTGA  1041

seq1  AACAAAAATAAAGA  1064
      ||| ||||||||||
seq2  AACCAAAATAAAGA  1055