BAC Information

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BAC

Clone NameB6Ng01-072I12
Chromosome1 (Build37)
Map Location 24,659,164 - 24,659,681
singlet/doubletsinglet
Overlap genenone
Upstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829
Downstream geneLmbrd1, 4930472D16Rik, LOC669171, Bai3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072I12.bB6Ng01-072I12.g
ACCDH889924DH889925
length995753
definitionDH889924|Mus musculus domesticus DNA, BAC clone: B6Ng01-072I12, 5' end.DH889925|Mus musculus domesticus DNA, BAC clone: B6Ng01-072I12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaagcagatttttcaaacagaacaattcagtgagaagccaaga
gaagacattttgaatcaggcagcttgaagaagcgtttgagccagatcagc
tgagttgaatcagccagccagagttctgagagaactagaaaggatgagct
tatttagcagtcattctcccaggctgaaacattctatgcctaaattagta
gaaagaggctaaaactaaagtcttcaagttccaggcttttagattattgg
attgtgcaggcgctggaagcttcaagcctgagctctagggacaggtagaa
gagagaaagcagtgctcttggctcaccccacacatttatttgcacagctt
tggtatggctttcatcttagctcatcttctgaggaaatatcagttacttt
tacatctttttcccaatgtgattggagaataaagtctaccaacagtgcag
tttcagaggagaaatttgcctgagattccaaaattgtagtaatcctgagc
ccagagcaaggaattactcatgcaataagactccaagatgacaattacat
ctggtgaataaaagttgtagccatgtaacttctgacaataggcagtgata
aattaacgtctattcaacaacagcactggaaaaccttatgtctataggca
taataatgaaattagatccatatattttgccctgtacaaaactgtggaaa
tgtctcttttatttcttctgatgaagtgatgagatgagagctgtatggaa
gcaaatacagggcttggactgagtgcacagtgttttttgtttgtttgttt
gtttgtttttttctgttttaattatccttagaactaggcctagacattta
tagcctcatacaatataatcttctaagctgacttattcaacctaacttct
cttagcttctgacttaattgttctacttaacatcatattctaaacttcag
gttccttcttattttctagcatttctgtcttcatctatgtctagc
gaattcatgaaattcttaggaaaatggatggaactagaaaatatcatcct
gagtgaggtaacccaatcacaaaagaacacacatggtatgcattcactta
taagtgaatattagtccagctgctcagaataccctagatacaattcacag
accaaatgaagctcaagaagaaggaagacaaaagtatggttaattcggtc
ttctttaaaggaggaacaaaattcccttggtggggagatagaaagcaaat
tttggagcagagactgaaggaaagaccatccagagactgccacatctaga
gatccatcccatatatagtcaccaaacccagacactcctgtggatgccaa
caagtgcttgcagacaggagcctgatacagctttcttctgaaaggctctg
ccagagcctgagaaatacagaggtagatgctctcagccaactattggact
gaacacaaggtccgcaatgcacgagctagaaaaagaattgcaagagctga
agggatttgcagccccataggaggaacaacaatatgattcaaccagtaac
ctcagagctcttagggactaaaccaccaaccaaagagtgctcatgaaggg
accatggctccagctgcgaaagtagcaggagatggttttgttggacatca
gtgagaggagaggcccttggtcctgagaaggcttgatgctccagtgtaag
ggaatgccaggacagggaaacaggagtggggggtgttggtgagcaggggg
agg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_24659164_24659681
seq2: B6Ng01-072I12.b_380_856 (reverse)

seq1  AGAAGAAAAACAAACAAACAAACAAATGTTAAGGATGGCATTTACTGTGA  50
      |||| |||||||||||||||||||||    ||           |||||| 
seq2  AGAA-AAAAACAAACAAACAAACAAACAAAAA---------ACACTGTGC  40

seq1  AGAGGAGTTCTCTGCTTTTCTGA----TTTATTTTCTTCTTCCCTCTTTC  96
      |        ||| |    ||  |    | ||||| |           |||
seq2  A--------CTCAG----TCCAAGCCCTGTATTTGC-----------TTC  67

seq1  CCTACCCCTTTTCTC-CGTCTCTTTTACCCACCCCATCCTAG-GATTTTG  144
      | |||  || |  || | || |||   |  |    ||   || ||  || 
seq2  CATACAGCTCTCATCTCATCACTTCATCAGAAGAAATAAAAGAGACATTT  117

seq1  TTTCAGCTTGG----GGGGATTGTTTTTTGGTTTTGTT---TTGTTTTGT  187
         ||| || |    ||| |   | | | | | |  ||   || || || 
seq2  CCACAGTTTTGTACAGGGCAAAATATATGGATCTAATTTCATTATTATGC  167

seq1  CT----------TGTTTT--ATTTGT-TTGTTTTTTAG--GTT--TTTAT  220
      ||           |||||  | |  | |||||   |||  |||  |||||
seq2  CTATAGACATAAGGTTTTCCAGTGCTGTTGTTGAATAGACGTTAATTTAT  217

seq1  --ATGGCATTTGTCTCAGGGT---GGTTTTGAACTCACAATCCACCCAGA  265
         || |  |||||  | | |    |  |  ||||   | ||   |||||
seq2  CACTGCCTATTGTCAGAAGTTACATGGCTACAACTTTTATTC--ACCAGA  265

seq1  TTCTGAGATT-ACACTGTGCA--CCTGTGGTTTGAGCAATGGCTCAGTGA  312
         ||  |||  ||   || |  | | | |  |||| |||   ||  || 
seq2  ---TGTAATTGTCATCTTGGAGTCTTATTGCATGAGTAAT---TCCTTG-  308

seq1  CTAAGAGCACCAACCATT-CTTGAGTTTACGTCCCTGCACCCATGTGACA  361
      ||  | || |  |  ||| ||  | |||       || |   || |  ||
seq2  CTCTGGGCTC--AGGATTACTACAATTT-------TGGA---ATCT--CA  344

seq1  GTTCACACCTGCCCGTGGCTACAGTTCTGTAAACTGGGACATCTGATTCT  411
      |         ||   |  || |   |||| ||||||   || ||| |  |
seq2  G---------GCAAATTTCTCC---TCTG-AAACTG---CA-CTGTTGGT  377

seq1  AACCTCCAGAGGCACTGCATTCACGTGTGCAAATCCACACTGTACATGTC  461
      |  ||  |      || || |||| |  | |||   |   |||| | || 
seq2  AGACTTTA----TTCTCCAATCACATTGGGAAA---AAGATGTAAAAGTA  420

seq1  ATTTTCATTTCCTCCGATGAAGGGGTGAGATGAGAGCCATATCCAAGCTG  511
      | |   |||||||| || || | | | |||||| ||||||| | ||||||
seq2  ACTGATATTTCCTCAGAAGATGAGCTAAGATGAAAGCCATACCAAAGCTG  470

seq1  TGCAAAT  518
      |||||||
seq2  TGCAAAT  477