BAC Information

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BAC

Clone NameB6Ng01-072L11
Chromosome1 (Build37)
Map Location 122,830,488 - 122,831,656
singlet/doubletsinglet
Overlap genenone
Upstream geneGm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
Downstream geneAI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072L11.bB6Ng01-072L11.g
ACCDH890054DH890055
length1,1581,212
definitionDH890054|Mus musculus domesticus DNA, BAC clone: B6Ng01-072L11, 5' end.DH890055|Mus musculus domesticus DNA, BAC clone: B6Ng01-072L11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttttagcaggaatgacataagagaggtaagaagggcccaggga
attaggattccctatgccatgctactccatgggaggagaggtcactgtgg
gagttagaggatagcaaagcatatgatcacattagtgtttgggaagtttg
tccccagtcaagttctgtagggagacccaaagagagcagattggggaaaa
aactggtaatgtgatccaggcaaaaaaaccacataaatggacgcgaatgt
gtcttggttggcttggtgcttgcctagcatgcataaagccctgggtttga
gccccagcactacttaaaccaggcaagatgatgcacatctgtaagcccag
tgactgagaggtgaaggcaagaggagaaagattcggtaaaggtcctgtca
gctacacgatgaagtcaaggccagtctggatgacttgagacatgactgtc
tcaaaatcaaaaccaaaacaaaggccttcctgaagctcaaagcctgtttt
ccaaccctaacccactctgcataacatgttctttgggggagctagggaac
taccacaaagatgtggacggtctggtaattcctgttgctataactaccac
attgtcatttgtgcctgactcgggattcgcgtgtcttgcactggcctcca
tggtggcaggtcaatgtgttagttctccagtagtttgaatcttagaacct
tctcagtttttaaaccctcttctgtggccttcagattaattatacaacta
tttgcagacctcttgactcgtgtctggcatatgacaaacacttggcttta
gtagtcagtcagtgaagacagaatctttaacgaatggtttctggagctgg
agatataacctgatgctatatgattacccagcatacatgaggtcagaagt
ttaatcaccagcccagcttaaatggggcatggtggcgtatacttatcatt
gtagtagttgcaagaaagtgggatatcaggaggttcaaaacattcttagc
tacatgtagaagttccaggctagcctaagctacatgagaaccctgcctca
aaaacccaaaccagatgctttctaaagcctggtgcatggggtgcaactcc
aactgtgctgactagaatgctatcatctttttctcagctctggagattct
tatgagca
gaattctttgttcagctctgagccccatcttttaagggggctatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggtct
ttttcttattgatggtgtcttaagagagctcaatgctttctaagagtact
cgaattctattctcagcatccatgtcaagtgacacacagccccctctatc
tccagctccagagatctattgccctcttctggtctctgtagatacctgca
ctaatgggcaagcacaaataaataaacataaacataaacctttgcatgtt
aataagtaaataaataaataaataaataaaggctcatataatgtttgaga
aataaaaaatgtttaataagtaatataactaatgttctattgtattaact
tagatgccttttaaaaaatttaaagtactctttttgtttaatttttctta
aattattttatttatttacattgcaatcattggccccctcctggcccccc
tctcacagttcctcctctctcttggcctccaggagggtacttccctcacc
agacttcccccttctctggggtctcacatttctagagaattaagagcatc
ctctcccaccgaggccataccaggcagaccgtggctacgtatgtgccagg
ggccttgaacctgtccatgtatgctcctggttggtgactatggccatttt
cctatgttaattctacctatccatgagcatgggagatctttccatcttcg
gaagtcttctccaatttctttttttaaggatttgaagttcttgtcttata
gatctttcacttgcttggtaagagtcataccaagatattttatattattt
gtggccattgtgaaagtgttgtttccctagttgctttctcagcctgttta
tcatttgtataaaggaaggctactgatttgtttgagtattttatattctg
ccactttgctgaagttgtttagtagctgtaggagtttctctgatgaattt
tgggggtcatttttgttactatccaattatacaaaaggataacttgactt
cttcttccattttttcccctgaccctttgtgttcattgcctagctagaac
ttgagacatatgatgaagtagaggcactgactgccggaattaagggaatg
gctccacactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_122830488_122831656
seq2: B6Ng01-072L11.b_45_1202 (reverse)

seq1  TGCTCATTAAGAATCTCAAGGGAGCTGAGAAAAAGATGGAATTAAGCATC  50
      |||||| |||||||||| |  |||||||||||||||||  ||  ||||| 
seq2  TGCTCA-TAAGAATCTCCA--GAGCTGAGAAAAAGATG--AT--AGCATT  43

seq1  CTAAGTCAGCACCAGTGTGGAGTTTGCA-CCCATGCAACCAGGCTTTAGA  99
      || |||||||| |||| ||||| ||||| ||||||| |||||||||||||
seq2  CT-AGTCAGCA-CAGT-TGGAG-TTGCACCCCATGC-ACCAGGCTTTAGA  88

seq1  AAGCATTCTGGTTTGGGTTTTTTGAGGCAGGG-TCTCATGTAGCTTAGGC  148
      ||||| ||||||||||| |||||||||||||| |||||||||||||||||
seq2  AAGCA-TCTGGTTTGGG-TTTTTGAGGCAGGGTTCTCATGTAGCTTAGGC  136

seq1  TAGCCTGGAAC-TCTACATGTAGCTAAGAATGTTTTGAA-CTTCTGATAT  196
      ||||||||||| ||||||||||||||||||||||||||| || |||||| 
seq2  TAGCCTGGAACTTCTACATGTAGCTAAGAATGTTTTGAACCTCCTGATA-  185

seq1  TCCCACCTTCTTGCAACTACTACAATGATAAGTATACGCCACCATGCCCC  246
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTTCTTGCAACTACTACAATGATAAGTATACGCCACCATGCCCC  235

seq1  ATTTAAGCTGGGCTGGTGATTAAACTTCTGACCTCATGTATGCTGGGTAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGCTGGGCTGGTGATTAAACTTCTGACCTCATGTATGCTGGGTAA  285

seq1  TCATATAGCATCAGGTTATATCTCCAGCTCCAGAAACCATTCGTTAAAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAGCATCAGGTTATATCTCCAGCTCCAGAAACCATTCGTTAAAGA  335

seq1  TTCTGTCTTCACTGACTGACTACTAAAGCCAAGTGTTTGTCATATGCCAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTTCACTGACTGACTACTAAAGCCAAGTGTTTGTCATATGCCAG  385

seq1  ACACGAGTCAAGAGGTCTGCAAATAGTTGTATAATTAATCTGAAGGCCAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAGTCAAGAGGTCTGCAAATAGTTGTATAATTAATCTGAAGGCCAC  435

seq1  AGAAGAGGGTTTAAAAACTGAGAAGGTTCTAAGATTCAAACTACTGGAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGGTTTAAAAACTGAGAAGGTTCTAAGATTCAAACTACTGGAGA  485

seq1  ACTAACACATTGACCTGCCACCATGGAGGCCAGTGCAAGACACGCGAATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACACATTGACCTGCCACCATGGAGGCCAGTGCAAGACACGCGAATC  535

seq1  CCGAGTCAGGCACAAATGACAATGTGGTAGTTATAGCAACAGGAATTACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCAGGCACAAATGACAATGTGGTAGTTATAGCAACAGGAATTACC  585

seq1  AGACCGTCCACATCTTTGTGGTAGTTCCCTAGCTCCCCCAAAGAACATGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGTCCACATCTTTGTGGTAGTTCCCTAGCTCCCCCAAAGAACATGT  635

seq1  TATGCAGAGTGGGTTAGGGTTGGAAAACAGGCTTTGAGCTTCAGGAAGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGAGTGGGTTAGGGTTGGAAAACAGGCTTTGAGCTTCAGGAAGGC  685

seq1  CTTTGTTTTGGTTTTGATTTTGAGACAGTCATGTCTCAAGTCATCCAGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTGGTTTTGATTTTGAGACAGTCATGTCTCAAGTCATCCAGAC  735

seq1  TGGCCTTGACTTCATCGTGTAGCTGACAGGACCTTTACCGAATCTTTCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGACTTCATCGTGTAGCTGACAGGACCTTTACCGAATCTTTCTC  785

seq1  CTCTTGCCTTCACCTCTCAGTCACTGGGCTTACAGATGTGCATCATCTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCTTCACCTCTCAGTCACTGGGCTTACAGATGTGCATCATCTTG  835

seq1  CCTGGTTTAAGTAGTGCTGGGGCTCAAACCCAGGGCTTTATGCATGCTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTAAGTAGTGCTGGGGCTCAAACCCAGGGCTTTATGCATGCTAG  885

seq1  GCAAGCACCAAGCCAACCAAGACACATTCGCGTCCATTTATGTGGTTTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCACCAAGCCAACCAAGACACATTCGCGTCCATTTATGTGGTTTTT  935

seq1  TTGCCTGGATCACATTACCAGTTTTTTCCCCAATCTGCTCTCTTTGGGTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGGATCACATTACCAGTTTTTTCCCCAATCTGCTCTCTTTGGGTC  985

seq1  TCCCTACAGAACTTGACTGGGGACAAACTTCCCAAACACTAATGTGATCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACAGAACTTGACTGGGGACAAACTTCCCAAACACTAATGTGATCA  1035

seq1  TATGCTTTGCTATCCTCTAACTCCCACAGTGACCTCTCCTCCCATGGAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTGCTATCCTCTAACTCCCACAGTGACCTCTCCTCCCATGGAGT  1085

seq1  AGCATGGCATAGGGAATCCTAATTCCCTGGGCCCTTCTTACCTCTCTTAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCATAGGGAATCCTAATTCCCTGGGCCCTTCTTACCTCTCTTAT  1135

seq1  GTCATTCCTGCTAAAAAGAATTC  1169
      |||||||||||||||||||||||
seq2  GTCATTCCTGCTAAAAAGAATTC  1158