BAC Information

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BAC

Clone NameB6Ng01-072N03
Chromosome1 (Build37)
Map Location 24,459,868 - 24,628,806
singlet/doubletdoublet
Overlap geneCol19a1, LOC100040475, LOC665829
Upstream geneLOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1
Downstream geneLmbrd1, 4930472D16Rik, LOC669171, Bai3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072N03.bB6Ng01-072N03.g
ACCDH890125DH890126
length1,147961
definitionDH890125|Mus musculus domesticus DNA, BAC clone: B6Ng01-072N03, 5' end.DH890126|Mus musculus domesticus DNA, BAC clone: B6Ng01-072N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,627,764 - 24,628,806)(24,459,868 - 24,460,831)
sequence
gaattcagaggcttgtgtttgagcctgagtctctttaaaattagcctgaa
gaaaaatgccttgaaataacagaaggcccagtttcaagcttgtttatttt
tataatgttaacattctcatattaaaattttggtgacagcgtactcagtc
tctgttttattaaaacttagaattcttttgtcattaaaataaaaatagca
gttggggacagtaagaactttctatttttgttcctaatgagactaaagag
aattgttatgcattgcatgagacagacttagaaacaggtctagcatatct
aatttttaaaatggtgtctgtggtttgatatttaatatgcatgctacaat
aatttggtgaatatgtttagcctgtcacagaaatcaggcaacaagacata
attatactaaaccttctaccctcagcacctcaacattacaacagatggta
tatcttttaagataaacaatattggggtggtgagaaggctcatgggtaat
ggctcttgcagcgcaagcctggctactgacttctatcctggaactcacat
aaagatgagagagaagtaactccatacacttttgtctctatatgcatgac
ttcatgtatcccaatgcccctctcccatccaatatttttgttaaggtaaa
atgtgttttaaaatattataatactctacaatcttgttggtggtatatcc
ataaactggatggcttatgtgtcttgggcaaatgatcttccttgaagctg
tagctcaatttaattttattttgatattttttgagattataatttaatga
catttcttcccctgcttttttccctataaaccctcccgtatagacctccc
ttctctccttcattcatggccatttttttctaattgttatttcatgacta
tctgtatatgcatacacacacagattatatttagccatctaaatgtatat
agatatataaaaacaaatatatacgtaaatataatctgttcattttatac
aatgctaccagctatgtttaattttccttgactgatagtgccaactgggc
accaatggatgtgttctttcttggagaagaacaccctcttccccctccca
gctttcttaattgactataaataattcttttggtgtaaggctgtgtg
gaattctgtatgctctcagcatgaagaataaaatgcagatatatacaatt
cccacgaaatctgaattgcctaattacggcactcaatacaacccttgaat
ttaatactggttggtgcgcactgaaaggccacttccaaaatgctgttatg
aaacggtacagggggaaagcacaagaaatggttcatttgatttaaagtgg
aggcacagagcgagcttcctttccaccaacgccacctgtctgatcattaa
gaggtgacagcttggtgttactggctgagtttcctgacacaggacacctt
tgctaatgtgctgatggaccgctcacgctgtcaagcaaaggtgagaaaca
ggaggtttcactcctgtgttaatgtcaacgagtaactgcacacacagtct
ctcacactgaagcaaccaaaaggctttccttactcacaagcttttcacac
aacagccttctgccatattcaggatgtttgggtcaccagataggatctac
aagaagtcactcactttaggcagtgtgtgtttgcgcgtgcatgcgtgtgt
gtgcgtgcgtgcgtgtgtgtgcgtgtgtgtgtgcgcgtgcgcgcgtgtgt
gtgcgtgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgt
gcgtgcgtgcgtgtgtgcgtgtgcgtgtgcgtgtgcgtgtgtgtgctttt
gggtagatacaataccttgtctccttttgggccaggtggaccttgaggac
ccgagtcacctttcaaaccctgaaaagaacataacaaaaatagttttctg
tggaagagtcaccaaaagtttcaattactgatagagttttagaaaaaaag
acaaaaaaaaaaaaacccaaaacaaaaaacaacaaacaaacaaacaaaca
aaaaatatgtcatgcttctctgaactcccaaatcccattctttcttttct
agtacaaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_24627764_24628806
seq2: B6Ng01-072N03.b_145_1191 (reverse)

seq1  CACAAAGCCTTA-ACACAAAGAATTATTTATAGTCAACTAAGAAAAGCTG  49
      |||| ||||||| ||  |||||||||||||||||||| |||| |||||||
seq2  CACACAGCCTTACACCAAAAGAATTATTTATAGTCAATTAAG-AAAGCTG  49

seq1  GGAGTGGG-AGA-GGTGGTCTTCTCCAAGAAAGAACACATCAATTGGTTG  97
      |||| ||| ||| |||| ||||||||||||||||||||||| ||||| ||
seq2  GGAGGGGGAAGAGGGTGTTCTTCTCCAAGAAAGAACACATCCATTGG-TG  98

seq1  CCCAGTTGGCACTATCAGTCAAG--AAAATAAACATAGCT-GTAGCATTG  144
      |||||||||||||||||||||||  ||| ||||||||||| |||||||||
seq2  CCCAGTTGGCACTATCAGTCAAGGAAAATTAAACATAGCTGGTAGCATTG  148

seq1  TATAAAATGAACAGATTATATTTACGTATATATTTGTTTTTATATATCTA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATGAACAGATTATATTTACGTATATATTTGTTTTTATATATCTA  198

seq1  TATACATTTAGATGGCTAAATATAATCTGTGTGTGTATGCATATACAGAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTTAGATGGCTAAATATAATCTGTGTGTGTATGCATATACAGAT  248

seq1  AGTCATGAAATAACAATTAGAAAAAAATGGCCATGAATGAAGGAGAGAAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGAAATAACAATTAGAAAAAAATGGCCATGAATGAAGGAGAGAAG  298

seq1  GGAGGTCTATACGGGAGGGTTTATAGGGAAAAAAGCAGGGGAAGAAATGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCTATACGGGAGGGTTTATAGGGAAAAAAGCAGGGGAAGAAATGT  348

seq1  CATTAAATTATAATCTCAAAAAATATCAAAATAAAATTAAATTGAGCTAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATTATAATCTCAAAAAATATCAAAATAAAATTAAATTGAGCTAC  398

seq1  AGCTTCAAGGAAGATCATTTGCCCAAGACACATAAGCCATCCAGTTTATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAAGGAAGATCATTTGCCCAAGACACATAAGCCATCCAGTTTATG  448

seq1  GATATACCACCAACAAGATTGTAGAGTATTATAATATTTTAAAACACATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACCACCAACAAGATTGTAGAGTATTATAATATTTTAAAACACATT  498

seq1  TTACCTTAACAAAAATATTGGATGGGAGAGGGGCATTGGGATACATGAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTAACAAAAATATTGGATGGGAGAGGGGCATTGGGATACATGAAG  548

seq1  TCATGCATATAGAGACAAAAGTGTATGGAGTTACTTCTCTCTCATCTTTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATATAGAGACAAAAGTGTATGGAGTTACTTCTCTCTCATCTTTA  598

seq1  TGTGAGTTCCAGGATAGAAGTCAGTAGCCAGGCTTGCGCTGCAAGAGCCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTCCAGGATAGAAGTCAGTAGCCAGGCTTGCGCTGCAAGAGCCA  648

seq1  TTACCCATGAGCCTTCTCACCACCCCAATATTGTTTATCTTAAAAGATAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCATGAGCCTTCTCACCACCCCAATATTGTTTATCTTAAAAGATAT  698

seq1  ACCATCTGTTGTAATGTTGAGGTGCTGAGGGTAGAAGGTTTAGTATAATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGTTGTAATGTTGAGGTGCTGAGGGTAGAAGGTTTAGTATAATT  748

seq1  ATGTCTTGTTGCCTGATTTCTGTGACAGGCTAAACATATTCACCAAATTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTGTTGCCTGATTTCTGTGACAGGCTAAACATATTCACCAAATTA  798

seq1  TTGTAGCATGCATATTAAATATCAAACCACAGACACCATTTTAAAAATTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCATGCATATTAAATATCAAACCACAGACACCATTTTAAAAATTA  848

seq1  GATATGCTAGACCTGTTTCTAAGTCTGTCTCATGCAATGCATAACAATTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCTAGACCTGTTTCTAAGTCTGTCTCATGCAATGCATAACAATTC  898

seq1  TCTTTAGTCTCATTAGGAACAAAAATAGAAAGTTCTTACTGTCCCCAACT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTCTCATTAGGAACAAAAATAGAAAGTTCTTACTGTCCCCAACT  948

seq1  GCTATTTTTATTTTAATGACAAAAGAATTCTAAGTTTTAATAAAACAGAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTTTATTTTAATGACAAAAGAATTCTAAGTTTTAATAAAACAGAG  998

seq1  ACTGAGTACGCTGTCACCAAAATTTTAATATGAGAATGTTAACATTATA  1043
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTACGCTGTCACCAAAATTTTAATATGAGAATGTTAACATTATA  1047

seq1: chr1_24459868_24460831
seq2: B6Ng01-072N03.g_67_1027

seq1  GAATTCTGTATGCTCTCAGCATGAAGAATAAAATGCAGATATATACAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATGCTCTCAGCATGAAGAATAAAATGCAGATATATACAATT  50

seq1  CCCACGAAATCTGAATTGCCTAATTACGGCACTCAATACAACCCTTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGAAATCTGAATTGCCTAATTACGGCACTCAATACAACCCTTGAAT  100

seq1  TTAATACTGGTTGGTGCGCACTGAAAGGCCACTTCCAAAATGCTGTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTGGTTGGTGCGCACTGAAAGGCCACTTCCAAAATGCTGTTATG  150

seq1  AAACGGTACAGGGGGAAAGCACAAGAAATGGTTCATTTGATTTAAAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGTACAGGGGGAAAGCACAAGAAATGGTTCATTTGATTTAAAGTGG  200

seq1  AGGCACAGAGCGAGCTTCCTTTCCACCAACGCCACCTGTCTGATCATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGAGCGAGCTTCCTTTCCACCAACGCCACCTGTCTGATCATTAA  250

seq1  GAGGTGACAGCTTGGTGTTACTGGCTGAGTTTCCTGACACAGGACACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACAGCTTGGTGTTACTGGCTGAGTTTCCTGACACAGGACACCTT  300

seq1  TGCTAATGTGCTGATGGACCGCTCACGCTGTCAAGCAAAGGTGAGAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATGTGCTGATGGACCGCTCACGCTGTCAAGCAAAGGTGAGAAACA  350

seq1  GGAGGTTTCACTCCTGTGTTAATGTCAACGAGTAACTGCACACACAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTTCACTCCTGTGTTAATGTCAACGAGTAACTGCACACACAGTCT  400

seq1  CTCACACTGAAGCAACCAAAAGGCTTTCCTTACTCACAAGCTTTTCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTGAAGCAACCAAAAGGCTTTCCTTACTCACAAGCTTTTCACAC  450

seq1  AACAGCCTTCTGCCATATTCAGGATGTTTGGGTCACCAGATAGGATCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTTCTGCCATATTCAGGATGTTTGGGTCACCAGATAGGATCTAC  500

seq1  AAGAAGTCACTCACTTTAGGCAGTGTGTGTTTGCGCGTGCATGCGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTCACTCACTTTAGGCAGTGTGTGTTTGCGCGTGCATGCGTGTGT  550

seq1  GTGCGTGCGTGCGTGTGTGTGCGTGTGTGTGTGCGCGTGCGCGCGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTGCGTGCGTGTGTGTGCGTGTGTGTGTGCGCGTGCGCGCGTGTGT  600

seq1  GTGCGTGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGT  650

seq1  GCGTGCGTGCGTGTGTGCGTGTGCGTGTGCGTGTGCGTGTGTGTGCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGTGCGTGTGTGCGTGTGCGTGTGCGTGTGCGTGTGTGTGCTTTT  700

seq1  GGGTAGATACAATACCTTGTCTCCTTTTGGGCCAGGTGGACCTTGAGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGATACAATACCTTGTCTCCTTTTGGGCCAGGTGGACCTTGAGGAC  750

seq1  CCGAGTCACCTTTCAAACCCTGAAAAGAACATAACAAAAATAGTTTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCACCTTTCAAACCCTGAAAAGAACATAACAAAAATAGTTTTCTG  800

seq1  TGGAAGAGTCACCAAAAGTTTCAATTACTGATAGAGTATTAGAAAAAAAG  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGAAGAGTCACCAAAAGTTTCAATTACTGATAGAGTTTTAGAAAAAAAG  850

seq1  ACAAAAAAAAAAAAACCCAAAAAACAAAAAACAAACAAACAAACAAACAA  900
      ||||||||||||||||||  |||||||||||| |||||||||||||||||
seq2  ACAAAAAAAAAAAAACCC--AAAACAAAAAAC-AACAAACAAACAAACAA  897

seq1  ACAAAAAACAGTTCATGCTTCCCTGAACTCCCAAATCCCAATCTTTCCTT  950
      |||||||| |  ||||||||| |||||||||||||||||| |||||| ||
seq2  ACAAAAAATATGTCATGCTTCTCTGAACTCCCAAATCCCATTCTTTCTTT  947

seq1  TCTAGTACAGAAAC  964
      ||||||||| ||||
seq2  TCTAGTACAAAAAC  961