BAC Information

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BAC

Clone NameB6Ng01-073B16
Chromosome1 (Build37)
Map Location 152,926,339 - 153,002,300
singlet/doubletdoublet
Overlap geneLOC668040
Upstream genePtgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370
Downstream geneLOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073B16.bB6Ng01-073B16.g
ACCDH890332DH890333
length1,1561,106
definitionDH890332|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B16, 5' end.DH890333|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,926,339 - 152,927,509)(153,001,189 - 153,002,300)
sequence
gaattctttgaatgtatttgaatgtggtctgtcgtaaatacagatgctag
ctagcattgctgggaaagtttcccagcaccccagagcccctcagacacaa
cccctgctggctagtgtcaatctcccaccccaacgcccaggatcctaaaa
ctaagggtatgtgaagggagagggaggcattggacacaaagctccggatt
ctggtgttaagaggcagcagcttttgataactctcctttttttttacctc
cgcacctctgtcttccgctttccatctctccggggactcacctagcagct
cctaaatcctcgcagtcaaataaataaataaatgtcttaaggcagcttct
tctttccggggtggatctttgtgattcatcactgaccccaaaacgacctt
attttggtgcctaaaacatatcctctaaatgactagtgtgcatgggatac
aggctcaaggcaacaggagaatggcccacggaagcctggctcttcggagc
tctgtgctcaccagagctgtgttccagctgcatttacttcatctttccaa
tatagtcctggtactatacccccgtgcttcttgccagctcggagtccacc
cacatgttcctcttgcctggagctctcctccagaggcaactggttcaggc
ctactcctttttcaaatctaaactcacttattgcttcttaggaggaactt
tgcccaaactttcagggtgagacccaacgttttcatagcaccttgcagct
cttctaaaaatagggtttaaataaataatggacggcttcactgttccgga
acgtaaattgggtggcacctaaggtaccgaccatggtggcaagtgactgg
aaagagctgagcaaccctggagccaagattctgggccttaggactgcgcg
gctccactttgcacaaagaggaaagaacaaagccggcagtctatgggaaa
gacaaacttagataggcagagcagacggcattcggagactccagcagacc
ttgtgtgttatcagagcacagaaaaggacactcccaaggcaggacgataa
gaacctgctgggtagttagactccagaaggacctaaaggcactaaaaggc
tgggggtggggggtgttaaaccctatatcatcattaataatgatcttacg
atcctt
gaattctttccttaaagaagaaaagaagctggagaaacctttgcattgta
atgaagttagttcctaattaggagcaacattctgatggaaacagacatag
tgacaggaagcattcagctggacaacaacactgtagaagcacagcaggct
ggagaagagaataaagatctacatcaactcattggcccagtgagcaaatc
acatccagctttgtgagcaatgatacccagtggactcagctggctcccag
gtgtctccttgttcatctaggaggtaatgttgttttctgtgttacaaatt
gtgattgactgggtagctgcaaggcagctttattatcagtttatgttgag
tccctatgtattttatttcccatcaatgttgtgtgttgcttatgcagcac
tcagcaagtattgggatatagagggagaaggtcctgccatctggtctacc
tccccactgaggtcttttggtaaggattgatctaggctacaagtattttc
accatctcagtttatgctgagttatgtcctttctccaaaccttacccata
aacctctgatctcactcttcacaaatagtctaatatcagaccaacccccc
cccacacacatttcaataaatcttgactgattagaactcagcaccaccac
ttttgacaagcaaattggctaaagagatctttaggttttactcataaggt
tttccttttctgctttctaagagaagtattacccaatgggtgtgaaacag
tccagtatccttccaggaggtgctagaatatcttaacggtgtcttctcta
agcctttgtgttgactaagcttgcaggtcagtctccttggtttgccacgc
tctccggtcgagtcagcttgacaggctgaggcttgaaagctactcacgag
gcaaaagagtttcacagaaactcgctcctggagtctgtcgttctctctaa
cccatacattaattttccattcccgagttagtctagtgtatggatccacg
tgctctcttttagtatttctaattgtaggtgccttttagattgaattccg
aaatagctaaagccagtgttcaacgtctagaacgtcctggagcagaccat
gggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_152926339_152927509
seq2: B6Ng01-073B16.b_48_1203

seq1  GAATTCTTTGAATGTATTTGAATGTGGTCTGTCGTAAATACAGATGCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAATGTATTTGAATGTGGTCTGTCGTAAATACAGATGCTAG  50

seq1  CTAGCATTGCTGGGAAAGTTTCCCAGCACCCCAGAGCCCCTCAGACACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTGCTGGGAAAGTTTCCCAGCACCCCAGAGCCCCTCAGACACAA  100

seq1  CCCCTGCTGGCTAGTGTCAATCTCCCACCCCAACGCCCAGGATCCTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTGGCTAGTGTCAATCTCCCACCCCAACGCCCAGGATCCTAAAA  150

seq1  CTAAGGGTATGTGAAGGGAGAGGGAGGCATTGGACACAAAGCTCCGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGTATGTGAAGGGAGAGGGAGGCATTGGACACAAAGCTCCGGATT  200

seq1  CTGGTGTTAAGAGGCAGCAGCTTTTGATAACTCTCCTTTTTTTTTACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTAAGAGGCAGCAGCTTTTGATAACTCTCCTTTTTTTTTACCTC  250

seq1  CGCACCTCTGTCTTCCGCTTTCCATCTCTCCGGGGACTCACCTAGCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCTCTGTCTTCCGCTTTCCATCTCTCCGGGGACTCACCTAGCAGCT  300

seq1  CCTAAATCCTCGCAGTCAAATAAATAAATAAATGTCTTAAGGCAGCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATCCTCGCAGTCAAATAAATAAATAAATGTCTTAAGGCAGCTTCT  350

seq1  TCTTTCCGGGGTGGATCTTTGTGATTCATCACTGACCCCAAAACGACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCGGGGTGGATCTTTGTGATTCATCACTGACCCCAAAACGACCTT  400

seq1  ATTTTGGTGCCTAAAACATATCCTCTAAATGACTAGTGTGCATGGGATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTGCCTAAAACATATCCTCTAAATGACTAGTGTGCATGGGATAC  450

seq1  AGGCTCAAGGCAACAGGAGAATGGCCCACGGAAGCCTGGCTCTTCGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAAGGCAACAGGAGAATGGCCCACGGAAGCCTGGCTCTTCGGAGC  500

seq1  TCTGTGCTCACCAGAGCTGTGTTCCAGCTGCATTTACTTCATCTTTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTCACCAGAGCTGTGTTCCAGCTGCATTTACTTCATCTTTCCAA  550

seq1  TATAGTCCTGGTACTATACCCCCGTGCTTCTTGCCAGCTCGGAGTCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCCTGGTACTATACCCCCGTGCTTCTTGCCAGCTCGGAGTCCACC  600

seq1  CACATGTTCCTCTTGCCTGGAGCTCTCCTCCAGAGGCAACTGGTTCAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTTCCTCTTGCCTGGAGCTCTCCTCCAGAGGCAACTGGTTCAGGC  650

seq1  CTACTCCTTTTTCAAATCTAAACTCACTTATTGCTTCTTAGGAGGAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCTTTTTCAAATCTAAACTCACTTATTGCTTCTTAGGAGGAACTT  700

seq1  TGCCCAAACTTTCAGGGTGAGACCCAACGTTTTCATAGCACCTTGCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAACTTTCAGGGTGAGACCCAACGTTTTCATAGCACCTTGCAGCT  750

seq1  CTTCTAAAAATAGGGTTTAAATAAATAATGGACGGCTTCACTGTTCCGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAAAATAGGGTTTAAATAAATAATGGACGGCTTCACTGTTCCGGA  800

seq1  ACGTAAATTGGGTGGCACCTAAGGTACCGACCATGGTGGCAAGTGACTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAATTGGGTGGCACCTAAGGTACCGACCATGGTGGCAAGTGACTGG  850

seq1  AAAGAGCTGAGCAACCCTGGAGCCAAGATTCTGGGCCTTAGGACTGCGCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTGAGCAACCCTGGAGCCAAGATTCTGGGCCTTAGGACTGCGCG  900

seq1  GCTCCACTTTGCACAAAGAGGAAAAGAACAAAGCCGGCAGTCTAATGGGA  950
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  GCTCCACTTTGCACAAAGAGG-AAAGAACAAAGCCGGCAGTCT-ATGGGA  948

seq1  AAGACAAAACTTAGATAGGCAGAGCAGACGGCATTCGGAGAACTCCAGCA  1000
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGAC-AAACTTAGATAGGCAGAGCAGACGGCATTCGGAG-ACTCCAGCA  996

seq1  GACCTTGTGTGTTATCAGAGCACAGAAAAGGACAACTCCCCAAGGCAAGG  1050
      ||||||||||||||||||||||||||||||||| ||| |||||||| |||
seq2  GACCTTGTGTGTTATCAGAGCACAGAAAAGGAC-ACT-CCCAAGGC-AGG  1043

seq1  ACGATAAGAAACCTGCTGGGTAGTTAAGACTCAGAAAGGACCTAAAGGCA  1100
      |||||||| |||||||||||||||| ||||||   |||||||||||||||
seq2  ACGATAAG-AACCTGCTGGGTAGTT-AGACTCCAGAAGGACCTAAAGGCA  1091

seq1  CTAAAAAGGGCTGGGGGTGGGGGTGTTTAAGACACTATAAACACACAATA  1150
      ||||||  ||||||||||||||| || | | || |||||    ||  || 
seq2  CTAAAA--GGCTGGGGGTGGGGG-GTGTTAAACCCTATA---TCATCATT  1135

seq1  AATAAATGATC-TACGATCCTT  1171
      ||| ||||||| ||||||||||
seq2  AAT-AATGATCTTACGATCCTT  1156

seq1: chr1_153001189_153002300
seq2: B6Ng01-073B16.g_68_1173 (reverse)

seq1  AAGCCCATGGTCTTGCTCAAGGACGTTCTAGGACTGTTGGAACACTGGCT  50
      |||||||||||| ||||| ||||||||||| ||| ||| |||||||||||
seq2  AAGCCCATGGTC-TGCTCCAGGACGTTCTA-GAC-GTT-GAACACTGGCT  46

seq1  TTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTACATTAAGATAATAC  100
      |||||||| || |||||||||| |||||||||| |||| | ||| |||||
seq2  TTAGCTATTTCGGAATTCAATC-TAAAAGGCACCTACAATTAGA-AATAC  94

seq1  TAAAAGAGAGCACGTGGATCCATACACTAGACTAACTCGGGAATGGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGAGCACGTGGATCCATACACTAGACTAACTCGGGAATGGAAAA  144

seq1  TTAATGTATGGGTTAGAGAGAACGACAGACTCCAGGAGCGAGTTTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTATGGGTTAGAGAGAACGACAGACTCCAGGAGCGAGTTTCTGTG  194

seq1  AAACTCTTTTGCCTCGTGAGTAGCTTTCAAGCCTCAGCCTGTCAAGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTTTGCCTCGTGAGTAGCTTTCAAGCCTCAGCCTGTCAAGCTGA  244

seq1  CTCGACCGGAGAGCGTGGCAAACCAAGGAGACTGACCTGCAAGCTTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACCGGAGAGCGTGGCAAACCAAGGAGACTGACCTGCAAGCTTAGTC  294

seq1  AACACAAAGGCTTAGAGAAGACACCGTTAAGATATTCTAGCACCTCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAGGCTTAGAGAAGACACCGTTAAGATATTCTAGCACCTCCTGG  344

seq1  AAGGATACTGGACTGTTTCACACCCATTGGGTAATACTTCTCTTAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATACTGGACTGTTTCACACCCATTGGGTAATACTTCTCTTAGAAAG  394

seq1  CAGAAAAGGAAAACCTTATGAGTAAAACCTAAAGATCTCTTTAGCCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGGAAAACCTTATGAGTAAAACCTAAAGATCTCTTTAGCCAATT  444

seq1  TGCTTGTCAAAAGTGGTGGTGCTGAGTTCTAATCAGTCAAGATTTATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCAAAAGTGGTGGTGCTGAGTTCTAATCAGTCAAGATTTATTGA  494

seq1  AATGTGTGTGGGGGGGGGTTGGTCTGATATTAGACTATTTGTGAAGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGTGGGGGGGGGTTGGTCTGATATTAGACTATTTGTGAAGAGTG  544

seq1  AGATCAGAGGTTTATGGGTAAGGTTTGGAGAAAGGACATAACTCAGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGAGGTTTATGGGTAAGGTTTGGAGAAAGGACATAACTCAGCATA  594

seq1  AACTGAGATGGTGAAAATACTTGTAGCCTAGATCAATCCTTACCAAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGATGGTGAAAATACTTGTAGCCTAGATCAATCCTTACCAAAAGA  644

seq1  CCTCAGTGGGGAGGTAGACCAGATGGCAGGACCTTCTCCCTCTATATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGGGGAGGTAGACCAGATGGCAGGACCTTCTCCCTCTATATCCC  694

seq1  AATACTTGCTGAGTGCTGCATAAGCAACACACAACATTGATGGGAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTGCTGAGTGCTGCATAAGCAACACACAACATTGATGGGAAATAA  744

seq1  AATACATAGGGACTCAACATAAACTGATAATAAAGCTGCCTTGCAGCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAGGGACTCAACATAAACTGATAATAAAGCTGCCTTGCAGCTAC  794

seq1  CCAGTCAATCACAATTTGTAACACAGAAAACAACATTACCTCCTAGATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAATCACAATTTGTAACACAGAAAACAACATTACCTCCTAGATGA  844

seq1  ACAAGGAGACACCTGGGAGCCAGCTGAGTCCACTGGGTATCATTGCTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAGACACCTGGGAGCCAGCTGAGTCCACTGGGTATCATTGCTCAC  894

seq1  AAAGCTGGATGTGATTTGCTCACTGGGCCAATGAGTTGATGTAGATCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGATGTGATTTGCTCACTGGGCCAATGAGTTGATGTAGATCTTT  944

seq1  ATTCTCTTCTCCAGCCTGCTGTGCTTCTACAGTGTTGTTGTCCAGCTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTCTCCAGCCTGCTGTGCTTCTACAGTGTTGTTGTCCAGCTGAA  994

seq1  TGCTTCCTGTCACTATGTCTGTTTCCATCAGAATGTTGCTCCTAATTAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGTCACTATGTCTGTTTCCATCAGAATGTTGCTCCTAATTAGG  1044

seq1  AACTAACTTCATTACAATGCAAAGGTTTCTCCAGCTTCTTTTCTTCTTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTTCATTACAATGCAAAGGTTTCTCCAGCTTCTTTTCTTCTTTA  1094

seq1  AGGAAAGAATTC  1112
      ||||||||||||
seq2  AGGAAAGAATTC  1106