BAC Information

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BAC

Clone NameB6Ng01-073K06
ChromosomeY (Build37)1 (Build37)
Map Location 1,544,590 - 1,544,796168,088,770 - 168,089,501
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
Downstream geneLOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073K06.bB6Ng01-073K06.g
ACCDH890706DH890707
length985735
definitionDH890706|Mus musculus domesticus DNA, BAC clone: B6Ng01-073K06, 5' end.DH890707|Mus musculus domesticus DNA, BAC clone: B6Ng01-073K06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,544,590 - 1,544,796)(168,088,770 - 168,089,501)
sequence
gaattctctagtctgaggcaaccagatctggggttcagaatttagctttt
gtatggatagcaaaagaccaatccccaacctttgccccttttgtctaaac
aaaaaggctctttctcttacaataagtgacatacagtaagaacaaaatga
aacaattataaaaactattagggaagatttatattcacaaagtccagtca
atttgtatttggcaactttgaataaactattctattacctatcctattgt
agtagctattcctgattgtcaacttgactatatctggaatgagctacaat
gcagaattggaaggctcaccagtgatcctgatctggaggcttggagatac
aagtttctgacctggaccttgtcatggagatcttgaggcatagtggctat
gaattccagaagattaaaacagggagatctctgagttcaaggtcacctag
gagttaaggcatggaaacacacaactttaatctgggctacaccttctgct
ggagacctacataaggacattggaagaaagaagatttattctctccttcg
actgcttgtcttgtgcaactgagcaactgctaaatccttggtcacagttg
ctgctgaccattgctgagagttggactacagactgaaagtcatcaataaa
ttcccttactatatagagactacccataagttctgtgactctagagaacc
ctgactctagagaaccctgagttcagagttttgtaacctaaatcattttc
tatcataacttgtattactaacctaaaacattttcttagatctaaaaaca
tctttttaaatcctaaacagttatgcttaattttaagaccacaactatct
agtcttcaaccccatcagaggcttgagaaggaataaatattgcctgagta
tgtaggaggtgctgggaagcaacttccaaaactataggaatgacagagaa
gttgcctgtgtgaaaagtcccttagagtcctctaa
gaattcactcgacttaaagtaaaagggacgatgtactagatatggattcc
cacaagcgtccagttttgctggtatgtttctggtttaccagttttatttt
taaaaggtttctttatttatattatgcatgtgagtacacagttgttctct
tcaaagacaccagaagagggcatcggatcccattacggatggtcgtgagc
caccatgtggttgctgggaactgaactcatctctggcagagcagtcattg
agtgctcttaaccacggagccatccctccagcccggatggccaagttaaa
acacgtttctaaaactgcctttgtgaggtgtgtatgtatgtgggagaact
gcccagtgagaggccagaggacaactagttgggagcctcctctctccacc
acgtgagccccagggcttgaactcacttatcaggcttggcaccaagtgcc
ttcacccacagggtcatctcaccagctcccggcctgccagtgtttgaatg
tctgagatttctgttgagctcacctggcagctgtgcttaaaacctgtggt
gttctgtctacccgctgttgcctgctcccgatctaagaacacagtgattt
cgtgactttcctcttgcaaagtttgcaccgtgggggccagggctgaaggt
cacgtggtcatgagcttcggtgggggggtgggggggctgacacagcgatg
tgatgcagactgtgtgagggatcctgggaggcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1544590_1544796
seq2: B6Ng01-073K06.b_289_536 (reverse)

seq1  AAGGTGTAGCCCAGATTAAAG--GTGTGTT--------------------  28
      |||||||||||||||||||||  |||||||                    
seq2  AAGGTGTAGCCCAGATTAAAGTTGTGTGTTTCCATGCCTTAACTCCTAGG  50

seq1  ---CCTTAAACTCGGAGA---------TTCAATCTTCTGGAATCCATAGC  66
         |||| ||||| ||||         || ||||||||||||| ||||||
seq2  TGACCTTGAACTCAGAGATCTCCCTGTTTTAATCTTCTGGAATTCATAGC  100

seq1  CACTATGGCTCAAGATCTCCATACCAAGATCCAGATAA-------GGATC  109
      ||||||| ||||||||||||||  |||| ||||| | |       | |||
seq2  CACTATGCCTCAAGATCTCCATGACAAGGTCCAGGTCAGAAACTTGTATC  150

seq1  TCCAAGCCTCCAGATAAGGGTCACTGGTGAGCCTTCCAATTCCGGATTGT  159
      ||||||||||||||| ||| |||||||||||||||||||||| | |||||
seq2  TCCAAGCCTCCAGATCAGGATCACTGGTGAGCCTTCCAATTCTGCATTGT  200

seq1  AGTTCATTCCAAATATTGTCAAGTTGACAACCAGGAATAGCCACTACA  207
      || |||||||| |||| ||||||||||||| |||||||||| ||||||
seq2  AGCTCATTCCAGATATAGTCAAGTTGACAATCAGGAATAGCTACTACA  248

seq1: chr1_168088770_168089501
seq2: B6Ng01-073K06.g_71_805

seq1  GAATTCACTCGACTTAAAGTAAAAGGGACGATGTACTAGATATGGATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCGACTTAAAGTAAAAGGGACGATGTACTAGATATGGATTCC  50

seq1  CACAAGCGTCCAGTTTTGCTGGTATGTTTCTGGTTTACCAGTTTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCGTCCAGTTTTGCTGGTATGTTTCTGGTTTACCAGTTTTATTTT  100

seq1  TAAAAGGTTTCTTTATTTATATTATGCATGTGAGTACACAGTTGTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTTTCTTTATTTATATTATGCATGTGAGTACACAGTTGTTCTCT  150

seq1  TCAAAGACACCAGAAGAGGGCATCGGATCCCATTACGGATGGTCGTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACACCAGAAGAGGGCATCGGATCCCATTACGGATGGTCGTGAGC  200

seq1  CACCATGTGGTTGCTGGGAACTGAACTCATCTCTGGCAGAGCAGTCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTGGTTGCTGGGAACTGAACTCATCTCTGGCAGAGCAGTCATTG  250

seq1  AGTGCTCTTAACCACGGAGCCATCCCTCCAGCCCGGATGGCCAAGTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCTTAACCACGGAGCCATCCCTCCAGCCCGGATGGCCAAGTTAAA  300

seq1  ACACGTTTCTAAAACTGCCTTTGTGAGGTGTGTATGTATGTGGGAGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTTTCTAAAACTGCCTTTGTGAGGTGTGTATGTATGTGGGAGAACT  350

seq1  GCCCAGTGAGAGGCCAGAGGACAACTAGTTGGGAGCCTCCTCTCTCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGAGAGGCCAGAGGACAACTAGTTGGGAGCCTCCTCTCTCCACC  400

seq1  ACGTGAGCCCCAGGGCTTGAACTCACTTATCAGGCTTGGCACCAAGTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAGCCCCAGGGCTTGAACTCACTTATCAGGCTTGGCACCAAGTGCC  450

seq1  TTCACCCACAGGGTCATCTCACCAGCTCCCGGCCTGCCAGTGTTTGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCACAGGGTCATCTCACCAGCTCCCGGCCTGCCAGTGTTTGAATG  500

seq1  TCTGAGATTTCTGTTGAGCTCACCTGGCAGCTGTGCTTAAAACCTGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATTTCTGTTGAGCTCACCTGGCAGCTGTGCTTAAAACCTGTGGT  550

seq1  GTTCTGTCTACCCGCTGTTGCCTGCTCCCGATCTAAGAACACAGTGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTCTACCCGCTGTTGCCTGCTCCCGATCTAAGAACACAGTGATTT  600

seq1  CGTGACTTTCCTCTTGCAAAGTTTGCACCGTGGGGGCCAGGGCTGAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTTTCCTCTTGCAAAGTTTGCACCGTGGGGGCCAGGGCTGAAGGT  650

seq1  CACGTGGTCATGAGCTTCGGTGGGGGG--TGGGGGGCTGACACAGTGATG  698
      |||||||||||||||||||||||||||   ||||||||||||||| ||||
seq2  CACGTGGTCATGAGCTTCGGTGGGGGGGTGGGGGGGCTGACACAGCGATG  700

seq1  TGATGCAGACTGTGTGAGGGATCCT-GGAGGCTTT  732
      ||||||||||||||||||||||||| |||||||||
seq2  TGATGCAGACTGTGTGAGGGATCCTGGGAGGCTTT  735