BAC Information

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BAC

Clone NameB6Ng01-073N03
Chromosome1 (Build37)
Map Location 175,197,358 - 175,325,974
singlet/doubletdoublet
Overlap geneOlfr1403, Darc, Cadm3
Upstream geneAtp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a
Downstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073N03.bB6Ng01-073N03.g
ACCDH890836DH890837
length1,071674
definitionDH890836|Mus musculus domesticus DNA, BAC clone: B6Ng01-073N03, 5' end.DH890837|Mus musculus domesticus DNA, BAC clone: B6Ng01-073N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(175,324,904 - 175,325,974)(175,197,358 - 175,198,031)
sequence
gaattctccaggaaggtccctggccagtaatgcagcaaccaacgccacat
ctcctgccagttccccaggcatttgcttttagcctaattctatctctcaa
gatctctccttccctcgtgttcacagacacacctgccctggcaccccgtg
ataaaggtcctacagggcctaggaaacccagtttccagagccagcacaag
gattgccaacctgcttgtgttccccattaccccacacacttggagagaaa
ttcggggatttcacagtgattatcgggggaagaaaatgttcttggaatag
aatcactacttaaaatatgttgaacatttctctatgtctacctggacccc
actaagcaatagcattttcaagaaccagactcttgatcctggttaaatcc
cacaaatcctcaatacaagcaatctgatgactggttgaaagaaccatcca
taaacaaaagagaaaggaatcggtgtgggcctttccagtgtaaccaagtg
tctagacacaccatgtaccctatttaattccgtcttttgcatgggtcctt
attttgaggtgagcaaaaggaagctcagagaggtccagtaggtgtcccca
ggaaaacagcaaagcttcagattcagacacaactctgggctgctcttact
gtacccacagtttgccatttacctgatcccaacacacaacgtgtcttgtc
atttattctctcaaaagattcatcatggaaaactatctttagcacaggaa
gaaactttctgttttgtttcatagcctaagcaacctctaaggatggcata
gaggaggtaaaatcatcatatccctttgcattttcagaactactggtggc
ggggcggggtgggggtggggggcataaacacaagactgttttacgaagaa
gcatctctctgtaaatacaaacaaaaatgacagtttttttttctagtagg
tgacatctatttggaagctcagtgccttgcaggactgggcccatcatatc
tgtagacttgcctgcctatcaatcaagtctctcttctccaacagcaaatt
atcctcaactccaactctccc
gaattctgtgctttgaaaattgccttctaactctagggtccaatgactca
gtcatatttgagagactcaaaacttcccaatacatttctctttcttaaat
tctggcttccagtaggaaaatcctggtggatgaagtgagtgggattagct
gctagcttaaaattagattttcagtctaggaaggacgttatttctgtaga
agaatttctttaaaaaaatttaggagctggggggcaagaatttcctcccc
caaaaattattggaacagaaatttacataaaatgttgcatctttgatggt
tgagacggcacagaaggaagctgggatgttgcgtttgctgctgtggtcca
gctgcccctgtgtgcactcatctgttccttccattgtgaggagccatggc
tttcctgattaggaagaattaaggaaacacaagaatgcatatgttccacg
tggtctttctagaacctagcttactttgatgtcacagttaccaaaaaaaa
aaaaaaacccaaaacaaaacaaaaaacaaacaaacaaacaaaaaacaaag
tgttttaccttaactaaaaatgtatgatgagtctcaattatacagggata
attaagggctagtccatttgaccctctcatctccacgggatatatatatg
tgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175324904_175325974
seq2: B6Ng01-073N03.b_45_1115 (reverse)

seq1  GGGAG-GTTGGA----AGGATAATTTTGGCTGTTGAAAGAAGAGAGACAT  45
      ||||| ||||||    ||||||||||  |||||||  ||||||||||| |
seq2  GGGAGAGTTGGAGTTGAGGATAATTT--GCTGTTG-GAGAAGAGAGAC-T  46

seq1  AGATTGATAGGCAGGCAGGTCTACAGATATGTTGGGCCCAGTCCTGCAAA  95
       |||||||||||||||| ||||||||||||| ||||||||||||||| ||
seq2  TGATTGATAGGCAGGCAAGTCTACAGATATGATGGGCCCAGTCCTGC-AA  95

seq1  GGCACTGTGGCTTCC-AATAGATGTCACCTACTAGAAAAAAAAACTGTTC  144
      |||||||  |||||| ||||||||||||||||||||||||||||||| ||
seq2  GGCACTG-AGCTTCCAAATAGATGTCACCTACTAGAAAAAAAAACTG-TC  143

seq1  ATTTTTGTTTGTATTTACAGAGAGATGCTTCTTCGTAAAACAGTCTTGTG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTTGTATTTACAGAGAGATGCTTCTTCGTAAAACAGTCTTGTG  193

seq1  TTTATGCCCCCCA-CCCCACCCCGCCCCGCCACCAGTAGTTCTGAAAATG  243
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCCCCCACCCCCACCCCGCCCCGCCACCAGTAGTTCTGAAAATG  243

seq1  CAAAGGGATATGATGATTTTACCTCCTCTATGCCATCCTTAGAGGTTGCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGATATGATGATTTTACCTCCTCTATGCCATCCTTAGAGGTTGCT  293

seq1  TAGGCTATGAAACAAAACAGAAAGTTTCTTCCTGTGCTAAAGATAGTTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTATGAAACAAAACAGAAAGTTTCTTCCTGTGCTAAAGATAGTTTT  343

seq1  CCATGATGAATCTTTTGAGAGAATAAATGACAAGACACGTTGTGTGTTGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATGAATCTTTTGAGAGAATAAATGACAAGACACGTTGTGTGTTGG  393

seq1  GATCAGGTAAATGGCAAACTGTGGGTACAGTAAGAGCAGCCCAGAGTTGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGTAAATGGCAAACTGTGGGTACAGTAAGAGCAGCCCAGAGTTGT  443

seq1  GTCTGAATCTGAAGCTTTGCTGTTTTCCTGGGGACACCTACTGGACCTCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAATCTGAAGCTTTGCTGTTTTCCTGGGGACACCTACTGGACCTCT  493

seq1  CTGAGCTTCCTTTTGCTCACCTCAAAATAAGGACCCATGCAAAAGACGGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTCCTTTTGCTCACCTCAAAATAAGGACCCATGCAAAAGACGGA  543

seq1  ATTAAATAGGGTACATGGTGTGTCTAGACACTTGGTTACACTGGAAAGGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAGGGTACATGGTGTGTCTAGACACTTGGTTACACTGGAAAGGC  593

seq1  CCACACCGATTCCTTTCTCTTTTGTTTATGGATGGTTCTTTCAACCAGTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCGATTCCTTTCTCTTTTGTTTATGGATGGTTCTTTCAACCAGTC  643

seq1  ATCAGATTGCTTGTATTGAGGATTTGTGGGATTTAACCAGGATCAAGAGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATTGCTTGTATTGAGGATTTGTGGGATTTAACCAGGATCAAGAGT  693

seq1  CTGGTTCTTGAAAATGCTATTGCTTAGTGGGGTCCAGGTAGACATAGAGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTTGAAAATGCTATTGCTTAGTGGGGTCCAGGTAGACATAGAGA  743

seq1  AATGTTCAACATATTTTAAGTAGTGATTCTATTCCAAGAACATTTTCTTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCAACATATTTTAAGTAGTGATTCTATTCCAAGAACATTTTCTTC  793

seq1  CCCCGATAATCACTGTGAAATCCCCGAATTTCTCTCCAAGTGTGTGGGGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGATAATCACTGTGAAATCCCCGAATTTCTCTCCAAGTGTGTGGGGT  843

seq1  AATGGGGAACACAAGCAGGTTGGCAATCCTTGTGCTGGCTCTGGAAACTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGAACACAAGCAGGTTGGCAATCCTTGTGCTGGCTCTGGAAACTG  893

seq1  GGTTTCCTAGGCCCTGTAGGACCTTTATCACGGGGTGCCAGGGCAGGTGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTAGGCCCTGTAGGACCTTTATCACGGGGTGCCAGGGCAGGTGT  943

seq1  GTCTGTGAACACGAGGGAAGGAGAGATCTTGAGAGATAGAATTAGGCTAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGAACACGAGGGAAGGAGAGATCTTGAGAGATAGAATTAGGCTAA  993

seq1  AAGCAAATGCCTGGGGAACTGGCAGGAGATGTGGCGTTGGTTGCTGCATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATGCCTGGGGAACTGGCAGGAGATGTGGCGTTGGTTGCTGCATT  1043

seq1  ACTGGCCAGGGACCTTCCTGGAGAATTC  1071
      ||||||||||||||||||||||||||||
seq2  ACTGGCCAGGGACCTTCCTGGAGAATTC  1071

seq1: chr1_175197358_175198031
seq2: B6Ng01-073N03.g_68_741

seq1  GAATTCTGTGCTTTGAAAATTGCCTTCTAACTCTAGGGTCCAATGACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCTTTGAAAATTGCCTTCTAACTCTAGGGTCCAATGACTCA  50

seq1  GTCATATTTGAGAGACTCAAAACTTCCCAATACATTTCTCTTTCTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATTTGAGAGACTCAAAACTTCCCAATACATTTCTCTTTCTTAAAT  100

seq1  TCTGGCTTCCAGTAGGAAAATCCTGGTGGATGAAGTGAGTGGGATTAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTCCAGTAGGAAAATCCTGGTGGATGAAGTGAGTGGGATTAGCT  150

seq1  GCTAGCTTAAAATTAGATTTTCAGTCTAGGAAGGACGTTATTTCTGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTTAAAATTAGATTTTCAGTCTAGGAAGGACGTTATTTCTGTAGA  200

seq1  AGAATTTCTTTAAAAAAATTTAGGAGCTGGGGGGCAAGAATTTCCTCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCTTTAAAAAAATTTAGGAGCTGGGGGGCAAGAATTTCCTCCCC  250

seq1  CAAAAATTATTGGAACAGAAATTTACATAAAATGTTGCATCTTTGATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTATTGGAACAGAAATTTACATAAAATGTTGCATCTTTGATGGT  300

seq1  TGAGACGGCACAGAAGGAAGCTGGGATGTTGCGTTTGCTGCTGTGGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACGGCACAGAAGGAAGCTGGGATGTTGCGTTTGCTGCTGTGGTCCA  350

seq1  GCTGCCCCTGTGTGCACTCATCTGTTCCTTCCATTGTGAGGAGCCATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCCTGTGTGCACTCATCTGTTCCTTCCATTGTGAGGAGCCATGGC  400

seq1  TTTCCTGATTAGGAAGAATTAAGGAAACACAAGAATGCATATGTTCCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGATTAGGAAGAATTAAGGAAACACAAGAATGCATATGTTCCACG  450

seq1  TGGTCTTTCTAGAACCTAGCTTACTTTGATGTCACAGTTACCAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTCTAGAACCTAGCTTACTTTGATGTCACAGTTACCAAAAAAAA  500

seq1  AAAAAAACCCAAAACAAAACAAAAAACAAACAAACAAACAAAAAACAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCCAAAACAAAACAAAAAACAAACAAACAAACAAAAAACAAAG  550

seq1  TGTTTTACCTTAACTAAAAATGTATGATGAGTCTCAATTATACAGGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACCTTAACTAAAAATGTATGATGAGTCTCAATTATACAGGGATA  600

seq1  ATTAAGGGCTAGTCCATTTGACCCTCTCATCTCCACGGGATATATATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGGCTAGTCCATTTGACCCTCTCATCTCCACGGGATATATATATG  650

seq1  TGTGTGTGTGTGTGTGTGTGTGTG  674
      ||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTG  674