BAC Information

Click to search

BAC

Clone NameB6Ng01-074E09
Chromosome1 (Build37)15 (Build37)
Map Location 177,899,585 - 177,900,10188,809,656 - 88,810,162
singlet/doubletsingletsinglet
Overlap genePld5
Upstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104
Downstream geneB020018G12Rik, Cep170, Sdccag8, LOC666235
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074E09.bB6Ng01-074E09.g
ACCDH891167DH891168
length718501
definitionDH891167|Mus musculus domesticus DNA, BAC clone: B6Ng01-074E09, 5' end.DH891168|Mus musculus domesticus DNA, BAC clone: B6Ng01-074E09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(177,899,585 - 177,900,101)(88,809,656 - 88,810,162)
sequence
gaattcattgttaacaactgggatcaacaagggctccacctaagattcac
ttaatcttagaagccagggtcaagggcttcatgcccttgccatagttcct
attttagtctattgtatagttcaccttccccttaggccattgtaaatacg
tgtgtatgagtgtaactcagctatagttttagaagccaggtgtgaggtct
ttactttcctaaggcaagggctttcacacccaagtcatggttctaactag
ggagttccgttctagctaaacatctcatgaataatgcaatactctaaaac
catagcccgatctacttcctaaaccattgtaaatttctgtatatgggtgc
gacttgacttttattctaagtgataatgtaataccagagactattctgaa
tgtcactgaatagcaatatttttactgaatttcaagcccatggtcttgct
caaggacattctaggactgttggaacactggcggaaggctttagctatgt
cagaattcaatcttaaaaggcacttatggggctggtgagatggctcagtg
gataagagcacccgactgctcttccgaaggtccgaagttcaaatcccagc
taaccacatggtggctcaaaaacacccgtaatgagatctgactccctctt
ccggagtgtctgaagacagctacagtgtacttataataaataaatacata
cataaatttttttaaaag
aatccagttggatccactcccatgatttttactgatcatttaagaactca
ggaaatttgggagtttcctcaacacatttgaaagaagttctagatgtctc
aggggacagtttgggtgaattgtttctttttctaattttatttttatttt
gtgtgtatgggtgctttgcctgtatgcatgtgtaccctgtgtgtacctta
tgtccacagaggccatagaagagggtgttagatcccctggaactagagtt
gtagacagttgtgagctgccatgtaggtgctggaattgtaagtcaccata
tggacgctgggaactgaacccagatgctgtggaagagcaggcagtgctct
taacctctgagccatctctccagccctgggtgaattgttccgaatccttc
ctgtttggttgacaagctaagataaccaaccatccctgattagaaaccag
tggctgagcctaggctgcgtggggttctgctgttcaaaggagctgggggg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_177899585_177900101
seq2: B6Ng01-074E09.b_582_762 (reverse)

seq1  CTTTTAAAAAAATTTATTTTATCTTTAATTGTGTATATCTGTGTCTGTGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATGGGTATGTGCATGTGAGTGTAGTACCCATGGAGGCCAGAAGAGGATGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CATATCCACTGGAGTTGGAGATAAAGGAGGTTGTGAAACTCTCAACAGAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGCTGAGATTTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGCTGGATA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTT  300
                                                        
seq2  --------------------------------------------------  0

seq1  GGTGGTCTTTTTGTCTTTTTTTTTTTTTTTTAAAGTAATCTTTTTTTTTA  350
                                 |||||||  ||| | | |     
seq2  --------------------------CTTTTAAAAAAATTTATGT-----  19

seq1  AGATTTATTTATTTATTATATGTAAGTACATTGTAGCTGTCTTCAGACAC  400
        || |||||||||||||    |||||||| |||||||||||||||||||
seq2  --ATGTATTTATTTATTA----TAAGTACACTGTAGCTGTCTTCAGACAC  63

seq1  TCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGT  450
      ||| ||||||||||||||||||| |||||| || || |||||||||||||
seq2  TCCGGAAGAGGGAGTCAGATCTCATTACGGGTGTTTTTGAGCCACCATGT  113

seq1  GGTT-GCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTC  499
      |||| |||||||||||||||  ||||||||||||||||||||||||||||
seq2  GGTTAGCTGGGATTTGAACTTCGGACCTTCGGAAGAGCAGTCGGGTGCTC  163

seq1  TAACCCACTGAGCCATCT  517
      | | ||||||||||||||
seq2  TTATCCACTGAGCCATCT  181

seq1: chr15_88809656_88810162
seq2: B6Ng01-074E09.g_69_575 (reverse)

seq1  CCCCCCCAGCTCCTTTGAACAGCAGAACCCCACGCAGCCTAGGCTCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCAGCTCCTTTGAACAGCAGAACCCCACGCAGCCTAGGCTCAGCC  50

seq1  ACTGGTTTCTAATCAGGGATGGTTGGTTATCTTAGCTTGTCAACCAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTTCTAATCAGGGATGGTTGGTTATCTTAGCTTGTCAACCAAACA  100

seq1  GGAAGGATTCGGAACAATTCACCCAGGGCTGGAGAGATGGCTCAGAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGATTCGGAACAATTCACCCAGGGCTGGAGAGATGGCTCAGAGGTT  150

seq1  AAGAGCACTGCCTGCTCTTCCACAGCATCTGGGTTCAGTTCCCAGCGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACTGCCTGCTCTTCCACAGCATCTGGGTTCAGTTCCCAGCGTCC  200

seq1  ATATGGTGACTTACAATTCCAGCACCTACATGGCAGCTCACAACTGTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTGACTTACAATTCCAGCACCTACATGGCAGCTCACAACTGTCTA  250

seq1  CAACTCTAGTTCCAGGGGATCTAACACCCTCTTCTATGGCCTCTGTGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTAGTTCCAGGGGATCTAACACCCTCTTCTATGGCCTCTGTGGAC  300

seq1  ATAAGGTACACACAGGGTACACATGCATACAGGCAAAGCACCCATACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTACACACAGGGTACACATGCATACAGGCAAAGCACCCATACACA  350

seq1  CAAAATAAAAATAAAATTAGAAAAAGAAACAATTCACCCAAACTGTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAAAATAAAATTAGAAAAAGAAACAATTCACCCAAACTGTCCCC  400

seq1  TGAGACATCTAGAACTTCTTTCAAATGTGTTGAGGAAACTCCCAAATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATCTAGAACTTCTTTCAAATGTGTTGAGGAAACTCCCAAATTTC  450

seq1  CTGAGTTCTTAAATGATCAGTAAAAATCATGGGAGTGGATCCAACTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCTTAAATGATCAGTAAAAATCATGGGAGTGGATCCAACTGGAT  500

seq1  TGAATTC  507
      |||||||
seq2  TGAATTC  507