BAC Information

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BAC

Clone NameB6Ng01-074H24
Chromosome1 (Build37)
Map Location 152,926,339 - 153,018,600
singlet/doubletdoublet
Overlap geneLOC668040
Upstream genePtgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370
Downstream geneLOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074H24.bB6Ng01-074H24.g
ACCDH891333DH891334
length1,0981,100
definitionDH891333|Mus musculus domesticus DNA, BAC clone: B6Ng01-074H24, 5' end.DH891334|Mus musculus domesticus DNA, BAC clone: B6Ng01-074H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,926,339 - 152,927,444)(153,017,494 - 153,018,600)
sequence
gaattctttgaatgtatttgaatgtggtctgtcgtaaatacagatgctag
ctagcattgctgggaaagtttcccagcaccccagagcccctcagacacaa
cccctgctggctagtgtcaatctcccaccccaacgcccaggatcctaaaa
ctaagggtatgtgaagggagagggaggcattggacacaaagctccggatt
ctggtgttaagaggcagcagcttttgataactctcctttttttttacctc
cgcacctctgtcttccgctttccatctctccggggactcacctagcagct
cctaaatcctcgcagtcaaataaataaataaatgtcttaaggcagcttct
tctttccggggtggatctttgtgattcatcactgaccccaaaacgacctt
attttggtgcctaaaacatatcctctaaatgactagtgtgcatgggatac
aggctcaaggcaacaggagaatggcccacggaagcctggctcttcggagc
tctgtgctcaccagagctgtgttccagctgcatttacttcatctttccaa
tatagtcctggtactatacccccgtgcttcttgccagctcggagtccacc
cacatgttcctcttgcctggagctctcctccagaggcaactggttcaggc
ctactcctttttcaaatctaaactcacttattgcttcttaggaggaactt
tgcccaaactttcagggtgagacccaacgttttcatagcaccttgcagct
cttctaaaaatagggtttaaataaataatggacggcttcactgttccgga
acgtaaattgggtggcacctaaggtaccgaccatggtggcaagtgactgg
aaagagctgagcaaccctggagccaagattctgggccttaggactgcgcg
gctccactttgcacaaagaggaaaagaacaagcccggcagtctaatggga
aagacaaacttagataggcagagcagacgcattcggagaactcagcagac
cttgtgtgttatcagagcacagaaaaggacactcccccagcaaggacgat
aagaaacctgcctggtagtaggactcagaaaggacctaagcactaaaa
gaattcaggttaagtcaacaatatatattttttctgacagtaaggattga
gataagtaagtgagatattgcctatgaaatcatgtgtgtgaatgggactg
gcttcaaaggaatactccatgggtcctttctaaatatgtggcatctcttc
tatattatttattccttcagtagcctgtttgtaatttggaagatgaatct
attgtgcagttcaaatggtacactatctatttaaactagtgatgacttgg
gccagcctgacaattcacgacagttacttaatcatgagtaaaactgtaag
tttttaaagctaagaaaagctctgatgcccagggcagacagcgaacatgc
atactgagaggcagattttgaacccccctggctaccattgtttgtctttg
ttttttttttttttttttttccttttcttttcttttttttctaaaaggaa
gaagttagatttaaatccagttacccagaaaaaaatgtattgtttcaaaa
tatatccaccaattcagttattatacattcagggacagtgctaatgtcag
tgggactatagtcattagcaaaattactttggcccccattgaattttatg
tctacagtaaagctgtccagcagaagtaggatgtgaggccagatatggtt
gggtcctagcacatggaaggctgaggcaggaagattgggagtttgagaca
agcctggactcctaccgagacactgtcttgcttttactaatgctataaag
aaatgaaatgttagcccaagtgtaacttaaacatttttattagaaaccat
aaaaaaacaaacctaaaaatttcatttcatttaactcaatttagctaaag
tactctattgaaatgtaattcaataatcctaaaataatcatgacattttc
ttttctttttaccttactgtctcataatttggtgtggatttaacacctgt
gacacatctcagctggggtcagccacatgctaagttctcaagctatggct
gctgcattggtacaggtacgtttgctacactacataatcatacagcaaac
gtttattttatgcaagaagataggctttatgggaatgcacttagagagag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_152926339_152927444
seq2: B6Ng01-074H24.b_44_1141

seq1  GAATTCTTTGAATGTATTTGAATGTGGTCTGTCGTAAATACAGATGCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAATGTATTTGAATGTGGTCTGTCGTAAATACAGATGCTAG  50

seq1  CTAGCATTGCTGGGAAAGTTTCCCAGCACCCCAGAGCCCCTCAGACACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTGCTGGGAAAGTTTCCCAGCACCCCAGAGCCCCTCAGACACAA  100

seq1  CCCCTGCTGGCTAGTGTCAATCTCCCACCCCAACGCCCAGGATCCTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTGGCTAGTGTCAATCTCCCACCCCAACGCCCAGGATCCTAAAA  150

seq1  CTAAGGGTATGTGAAGGGAGAGGGAGGCATTGGACACAAAGCTCCGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGTATGTGAAGGGAGAGGGAGGCATTGGACACAAAGCTCCGGATT  200

seq1  CTGGTGTTAAGAGGCAGCAGCTTTTGATAACTCTCCTTTTTTTTTACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTAAGAGGCAGCAGCTTTTGATAACTCTCCTTTTTTTTTACCTC  250

seq1  CGCACCTCTGTCTTCCGCTTTCCATCTCTCCGGGGACTCACCTAGCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCTCTGTCTTCCGCTTTCCATCTCTCCGGGGACTCACCTAGCAGCT  300

seq1  CCTAAATCCTCGCAGTCAAATAAATAAATAAATGTCTTAAGGCAGCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATCCTCGCAGTCAAATAAATAAATAAATGTCTTAAGGCAGCTTCT  350

seq1  TCTTTCCGGGGTGGATCTTTGTGATTCATCACTGACCCCAAAACGACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCGGGGTGGATCTTTGTGATTCATCACTGACCCCAAAACGACCTT  400

seq1  ATTTTGGTGCCTAAAACATATCCTCTAAATGACTAGTGTGCATGGGATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTGCCTAAAACATATCCTCTAAATGACTAGTGTGCATGGGATAC  450

seq1  AGGCTCAAGGCAACAGGAGAATGGCCCACGGAAGCCTGGCTCTTCGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAAGGCAACAGGAGAATGGCCCACGGAAGCCTGGCTCTTCGGAGC  500

seq1  TCTGTGCTCACCAGAGCTGTGTTCCAGCTGCATTTACTTCATCTTTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTCACCAGAGCTGTGTTCCAGCTGCATTTACTTCATCTTTCCAA  550

seq1  TATAGTCCTGGTACTATACCCCCGTGCTTCTTGCCAGCTCGGAGTCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCCTGGTACTATACCCCCGTGCTTCTTGCCAGCTCGGAGTCCACC  600

seq1  CACATGTTCCTCTTGCCTGGAGCTCTCCTCCAGAGGCAACTGGTTCAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTTCCTCTTGCCTGGAGCTCTCCTCCAGAGGCAACTGGTTCAGGC  650

seq1  CTACTCCTTTTTCAAATCTAAACTCACTTATTGCTTCTTAGGAGGAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCTTTTTCAAATCTAAACTCACTTATTGCTTCTTAGGAGGAACTT  700

seq1  TGCCCAAACTTTCAGGGTGAGACCCAACGTTTTCATAGCACCTTGCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAACTTTCAGGGTGAGACCCAACGTTTTCATAGCACCTTGCAGCT  750

seq1  CTTCTAAAAATAGGGTTTAAATAAATAATGGACGGCTTCACTGTTCCGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAAAATAGGGTTTAAATAAATAATGGACGGCTTCACTGTTCCGGA  800

seq1  ACGTAAATTGGGTGGCACCTAAGGTACCGACCATGGTGGCAAGTGACTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAATTGGGTGGCACCTAAGGTACCGACCATGGTGGCAAGTGACTGG  850

seq1  AAAGAGCTGAGCAACCCTGGAGCCAAGATTCTGGGCCTTAGGACTGCGCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTGAGCAACCCTGGAGCCAAGATTCTGGGCCTTAGGACTGCGCG  900

seq1  GCTCCACTTTGCACAAAGAGGAAAAGAACAAAGCCGGCAGTCTAATGGGA  950
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  GCTCCACTTTGCACAAAGAGGAAAAGAACAAGCCCGGCAGTCTAATGGGA  950

seq1  AAGACAAAACTTAGATAGGCAGAGCAGACGGCATTCGGAGAACTCCAGCA  1000
      ||||| ||||||||||||||||||||||| |||||||||||||| |||||
seq2  AAGAC-AAACTTAGATAGGCAGAGCAGAC-GCATTCGGAGAACT-CAGCA  997

seq1  GACCTTGTGTGTTATCAGAGCACAGAAAAGGACAACTCCCCAAGGCAAGG  1050
      ||||||||||||||||||||||||||||||||| ||||||| | ||||||
seq2  GACCTTGTGTGTTATCAGAGCACAGAAAAGGAC-ACTCCCCCA-GCAAGG  1045

seq1  ACGATAAGAAACCTGCTGGGTAGTTAAGACTCAGAAAGGACCTAAAGGCA  1100
      ||||||||||||||||  ||||| || ||||||||||||||||||  |||
seq2  ACGATAAGAAACCTGCCTGGTAG-TAGGACTCAGAAAGGACCTAA--GCA  1092

seq1  CTAAAA  1106
      ||||||
seq2  CTAAAA  1098

seq1: chr1_153017494_153018600
seq2: B6Ng01-074H24.g_68_1167 (reverse)

seq1  CTCTCTCT-AGTGCA-TCCCATAAGCTCTA-CTTCTTGCCATTAAAATAC  47
      |||||||| |||||| ||||||||   ||| ||||||||   ||||||  
seq2  CTCTCTCTAAGTGCATTCCCATAAAGCCTATCTTCTTGC--ATAAAAT--  46

seq1  AAACGTTTGCTTGTATGGTTATGTAGGTGTTAGCAAACGTACCTGTACCA  97
      |||||||||| |||||| ||||||| ||| ||||||||||||||||||||
seq2  AAACGTTTGC-TGTATGATTATGTA-GTG-TAGCAAACGTACCTGTACCA  93

seq1  ATGCAGCAGCCAATAGGCCTGAGAACTTAGCATGTGGCTGACCCCAGCTG  147
      ||||||||||| ||| || |||||||||||||||||||||||||||||||
seq2  ATGCAGCAGCC-ATA-GCTTGAGAACTTAGCATGTGGCTGACCCCAGCTG  141

seq1  AGATGTGTCACAGGTGTTAAATCCACACCAAATTATGGAGACAGTAAGGT  197
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGATGTGTCACAGGTGTTAAATCCACACCAAATTAT-GAGACAGTAAGGT  190

seq1  AAAAAGAAAAGAAAATGTCATGATTATTTTAGGATTATTGAATTACATTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAGAAAATGTCATGATTATTTTAGGATTATTGAATTACATTT  240

seq1  CAATAGAGTACTTTAGCTAAATTGAGTTAAATGAAATGAAATTTTTAGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAGTACTTTAGCTAAATTGAGTTAAATGAAATGAAATTTTTAGGT  290

seq1  TTGTTTTTTTATGGTTTCTAATAAAAATGTTTAAGTTACACTTGGGCTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTATGGTTTCTAATAAAAATGTTTAAGTTACACTTGGGCTAA  340

seq1  CATTTCATTTCTTTATAGCATTAGTAAAAGCAAGACAGTGTCTCGGTAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATTTCTTTATAGCATTAGTAAAAGCAAGACAGTGTCTCGGTAGG  390

seq1  AGTCCAGGCTTGTCTCAAACTCCCAATCTTCCTGCCTCAGCCTTCCATGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGGCTTGTCTCAAACTCCCAATCTTCCTGCCTCAGCCTTCCATGT  440

seq1  GCTAGGACCCAACCATATCTGGCCTCACATCCTACTTCTGCTGGACAGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGACCCAACCATATCTGGCCTCACATCCTACTTCTGCTGGACAGCT  490

seq1  TTACTGTAGACATAAAATTCAATGGGGGCCAAAGTAATTTTGCTAATGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTAGACATAAAATTCAATGGGGGCCAAAGTAATTTTGCTAATGAC  540

seq1  TATAGTCCCACTGACATTAGCACTGTCCCTGAATGTATAATAACTGAATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCCCACTGACATTAGCACTGTCCCTGAATGTATAATAACTGAATT  590

seq1  GGTGGATATATTTTGAAACAATACATTTTTTTCTGGGTAACTGGATTTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATATATTTTGAAACAATACATTTTTTTCTGGGTAACTGGATTTAA  640

seq1  ATCTAACTTCTTCCTTTTAGAAAAAAAAGAAAAGAAAAGGAAAAAAAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACTTCTTCCTTTTAGAAAAAAAAGAAAAGAAAAGGAAAAAAAAAA  690

seq1  AAAAAAAAAACAAAGACAAACAATGGTAGCCAGGGGGGTTCAAAATCTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACAAAGACAAACAATGGTAGCCAGGGGGGTTCAAAATCTGC  740

seq1  CTCTCAGTATGCATGTTCGCTGTCTGCCCTGGGCATCAGAGCTTTTCTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGTATGCATGTTCGCTGTCTGCCCTGGGCATCAGAGCTTTTCTTA  790

seq1  GCTTTAAAAACTTACAGTTTTACTCATGATTAAGTAACTGTCGTGAATTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAAAACTTACAGTTTTACTCATGATTAAGTAACTGTCGTGAATTG  840

seq1  TCAGGCTGGCCCAAGTCATCACTAGTTTAAATAGATAGTGTACCATTTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGGCCCAAGTCATCACTAGTTTAAATAGATAGTGTACCATTTGA  890

seq1  ACTGCACAATAGATTCATCTTCCAAATTACAAACAGGCTACTGAAGGAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACAATAGATTCATCTTCCAAATTACAAACAGGCTACTGAAGGAAT  940

seq1  AAATAATATAGAAGAGATGCCACATATTTAGAAAGGACCCATGGAGTATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATAGAAGAGATGCCACATATTTAGAAAGGACCCATGGAGTATT  990

seq1  CCTTTGAAGCCAGTCCCATTCACACACATGATTTCATAGGCAATATCTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAAGCCAGTCCCATTCACACACATGATTTCATAGGCAATATCTCA  1040

seq1  CTTACTTATCTCAATCCTTACTGTCAGAAAAAATATATATTGTTGACTTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTATCTCAATCCTTACTGTCAGAAAAAATATATATTGTTGACTTA  1090

seq1  ACCTGAATTC  1107
      ||||||||||
seq2  ACCTGAATTC  1100