BAC Information

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BAC

Clone NameB6Ng01-074J22
ChromosomeY (Build37)1 (Build37)
Map Location 1,120,586 - 1,121,07417,342,984 - 17,343,983
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074J22.bB6Ng01-074J22.g
ACCDH891412DH891413
length9641,004
definitionDH891412|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J22, 5' end.DH891413|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,586 - 1,121,074)(17,342,984 - 17,343,983)
sequence
gaattccttttttttttttccattttttattaggtatttagctcatttac
atttccaatgctataccaaaagtcccccatatccacccacccccactccc
ctgcccacccactcccccttttttggccctggtgttcccctgtactgggg
catataaagtttgcaagtccaatgggcctctctttccagtgatggccgac
taggccatcttttgatatatatgcagctagagtcaaaagctccggggtac
tggttagttcataatgttgttccgcctatagggttgcagatccctttagc
tccttggctactttctctagctcctccattgggagccctatgatccatcc
attagctgactgtgagcatgcacttctgtgtttgctaggccccggcatag
tctcacaagagacagctacatctgggtcctttcaataaaatcttgctagt
gtatgcaatggtgtcagcgtttggatgctgattatggggtggatccctgg
atatggcagtctctacatggtccatcctttcatcacagctccaaactttg
tcgctgtaactccttccatgggtgttttgttcccaaatctaaggaggggc
atagtgtccacacttcagtcttcattcttcttgaatttcatgtgtttagc
aaattatatcttatatcttgggtatcctaggtttggggctaatatccact
tatcagtgagtacatattgtgtgagtttctttgtgaatgtgttacctcac
tcaggatgaagccctccaggtccatccatttggctaggaatttcataaat
tcattctttttaatagctgagtagtactccattgtgtagatgtaccacat
ttctgtatccattcctctgttgaggggcatctgggtttctttccagcttc
tggctattataaataagctgctatgacatagtggagcatgtgtccttctt
accagttggggcat
gaattccaggcaggccagtagcttaaagcttatttcttgattcacaaatg
ggaggcagagagaggtaacttggaatagtttggggttttgaaacctcaag
gactgttcccagagacacctcctcctataagagcacacctcctaatcctt
cctaaacagttccaccaatgggggaccaagtattcaaatacatataatac
agataatttaaattaaattttgtgcctttaatgagtcaaccaactatcaa
ttatgtacacagtttttttctggattagctttaaaacaatgagaatacat
tgctgtattctttcccagattttcattttgatgggctttgcattttgatg
ttactcatcatgtcagaaattctccattgggcttttatatcagccatctc
tctaatcactttttgtttttaactttttcctttgtactcataattggtat
atttcacttattcctcaggttacctcttttttatcacagtggttatcttt
atccttgcttttcaccatttttaaaaaaattatttgattgacaaatagcc
aaatggtgcttaatctattaaatctaccaccttgtcttaaaaaatcatgc
atttggttcaattgcggttttttgtttgtttgtttgtttgtgttgttttt
aagttagggtcatagtctttgactatggttaaggtttgctctgttgctat
gtattgtaatgctaaatactggcccccaaagtctggttgccctaaggaat
gaaagaatcctcacaaacatcaaataatgttatgtaactttgctcctcta
ttaaaactatttgtttgaataaagatgcaaaaagtcaatagctgtgtaga
agagaggtaggtgaggttgttgggctcccaagcttggggtctggaggaag
atcacaaagagagaagagagaaagtggagagagaagatgcgatggggtaa
gggaatcatagaatgggccatgagtactgggccaactgaaaataaaagcc
atcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120586_1121074
seq2: B6Ng01-074J22.b_57_546

seq1  TTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATG  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATG  50

seq1  CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  100

seq1  ACTCCCCC-TTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGT  149
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  ACTCCCCCTTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGT  150

seq1  TTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCT  200

seq1  TTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTC  249
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  TTTGATATATATGCAGCTAGAGTCAAAAGCTCCGGGGTACTGGTTAGTTC  250

seq1  ATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTA  299
      |||| |||||||| |||||||||||| |||||||||||||||||||||||
seq2  ATAATGTTGTTCCGCCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTA  300

seq1  CTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGAC  350

seq1  TGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGA  399
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  TGTGAGCATGCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGA  400

seq1  GACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTATGCAATG  449
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  GACAGCTACATCTGGGTCCTTTCAATAAAATCTTGCTAGTGTATGCAATG  450

seq1  GTGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCCTGG  489
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCCTGG  490

seq1: chr1_17342984_17343983
seq2: B6Ng01-074J22.g_69_1072

seq1  GAATTCCAGGCAGGCCAGTAGCTTAAAGCTTATTTCTTGATTCACAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCAGGCCAGTAGCTTAAAGCTTATTTCTTGATTCACAAATG  50

seq1  GGAGGCAGAGAGAGGTAACTTGGAATAGTTTGGGGTTTTGAAACCTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGAGAGGTAACTTGGAATAGTTTGGGGTTTTGAAACCTCAAG  100

seq1  GACTGTTCCCAGAGACACCTCCTCCTATAAGAGCACACCTCCTAATCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTCCCAGAGACACCTCCTCCTATAAGAGCACACCTCCTAATCCTT  150

seq1  CCTAAACAGTTCCACCAATGGGGGACCAAGTATTCAAATACATATAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACAGTTCCACCAATGGGGGACCAAGTATTCAAATACATATAATAC  200

seq1  AGATAATTTAAATTAAATTTTGTGCCTTTAATGAGTCAACCAACTATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTTAAATTAAATTTTGTGCCTTTAATGAGTCAACCAACTATCAA  250

seq1  TTATGTACACAGTTTTTTTCTGGATTAGCTTTAAAACAATGAGAATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACACAGTTTTTTTCTGGATTAGCTTTAAAACAATGAGAATACAT  300

seq1  TGCTGTATTCTTTCCCAGATTTTCATTTTGATGGGCTTTGCATTTTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTATTCTTTCCCAGATTTTCATTTTGATGGGCTTTGCATTTTGATG  350

seq1  TTACTCATCATGTCAGAAATTCTCCATTGGGCTTTTATATCAGCCATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCATCATGTCAGAAATTCTCCATTGGGCTTTTATATCAGCCATCTC  400

seq1  TCTAATCACTTTTTGTTTTTAACTTTTTCCTTTGTACTCATAATTGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCACTTTTTGTTTTTAACTTTTTCCTTTGTACTCATAATTGGTAT  450

seq1  ATTTCACTTATTCCTCAGGTTACCTCTTTTTTATCACAGTGGTTATCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACTTATTCCTCAGGTTACCTCTTTTTTATCACAGTGGTTATCTTT  500

seq1  ATCCTTGCTTTTCACCATTTTTAAAAAAATTATTTGATTGACAAATAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGCTTTTCACCATTTTTAAAAAAATTATTTGATTGACAAATAGCC  550

seq1  AAATGGTGCTTAATCTATTAAATCTACCACCTTGTCTTAAAAAATCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTGCTTAATCTATTAAATCTACCACCTTGTCTTAAAAAATCATGC  600

seq1  ATTTGGTTCAATTGCGGTTTTTTGTTTGTTTGTTTGTTTGTGTTGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTCAATTGCGGTTTTTTGTTTGTTTGTTTGTTTGTGTTGTTTTT  650

seq1  AAGTTAGGGTCATAGTCTTTGACTATGGTTAAGGTTTGCTCTGTTGCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGGGTCATAGTCTTTGACTATGGTTAAGGTTTGCTCTGTTGCTAT  700

seq1  GTATTGTAATGCTAAATACTGGCCCCCAAAGTCTGGTTGCCCTAAGGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTAATGCTAAATACTGGCCCCCAAAGTCTGGTTGCCCTAAGGAAT  750

seq1  GAAAGAATCCTCACAAACATCAAATAATGTTATGTAACTTTGCTCCTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATCCTCACAAACATCAAATAATGTTATGTAACTTTGCTCCTCTA  800

seq1  TTAAAACTA-TTGTTTGAATAAAGATGCAAAAAGTCAATAGCTGTGTAGA  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTATTTGTTTGAATAAAGATGCAAAAAGTCAATAGCTGTGTAGA  850

seq1  AGAGAGGTAGGTGAGGTTGTTTGGCTCCCAAGCTTGGGGTCT-GAGGAAG  898
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  AGAGAGGTAGGTGAGGTTGTTGGGCTCCCAAGCTTGGGGTCTGGAGGAAG  900

seq1  ATCACAAAGAGAGAAGAGAGAAAGTGGAGAGAGAAGATGCGATGGGGTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAAGAGAGAAGAGAGAAAGTGGAGAGAGAAGATGCGATGGGGTAA  950

seq1  GGG-ATCATAAGAATTGGCCATGAGTACT-GGCCAACTG-AAATAAAAGC  995
      ||| ||||| ||||| ||||||||||||| ||||||||| ||||||||||
seq2  GGGAATCAT-AGAATGGGCCATGAGTACTGGGCCAACTGAAAATAAAAGC  999

seq1  CATCC  1000
      |||||
seq2  CATCC  1004