BAC Information

Click to search

BAC

Clone NameB6Ng01-075A19
Chromosome12 (Build37)1 (Build37)
Map Location 86,748,632 - 86,749,29145,757,886 - 45,759,013
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEntpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549
Downstream geneLOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075A19.bB6Ng01-075A19.g
ACCDH891719DH891720
length1,1281,116
definitionDH891719|Mus musculus domesticus DNA, BAC clone: B6Ng01-075A19, 5' end.DH891720|Mus musculus domesticus DNA, BAC clone: B6Ng01-075A19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,748,632 - 86,749,291)(45,757,886 - 45,759,013)
sequence
gaattcttctgggcttgatctgatgaatcccagcctctggtcaggtgggc
ttcctctgtcccttttcctgctggcacaagaccctccatgattctttgga
gctgatgttgcattccactcacccatgatcccgaggtgatcccgaggtcc
tgcggttggagagtattctggagcccttaatgggctctgctgggtttata
ataaagatggtttgtgttttatggcatgtgtttgtgtgcgggggcggtgg
gagggattgccctgaatttcatccagaatcctccctgccttaaccacttg
ataacatgtgaaaaggaacaaaagggcttctaacactagaaaaaattcaa
ggccaaacattttccactttacttctgatagactgtcttgaatttcctta
gaaagttcaaggccaggcttacctcgtaaagctatactcactggtactct
cgttccccagctgaaaagttctgaattcatgcagttgaatccttcttaac
agtctgctttacgggaaactttattaccgcgacccgcagttctggttctg
gaatgagggatcttccttgtaccggtgatggtaaactctcgtcccgagtt
ttttctcgtcccggaatttggcaccaattgttattaaacgcgttctcacg
cccggccaggaagaacaccacagaccagaatctttctgcggcaaaacttt
attgcttacatcttcaggagcaagagtgtaagaagcaagagagcgagaaa
acgaaaccccgtccctattaaggagaattatccttcgcctaggacgtgtc
actccctgattggctgcagcccatcggccgagttgacgtcacggggaagg
cagagcacatggagtggagaaccaccctcggcacatgcgcagattatttg
tttaccacttagaacacagctgtcagcgccatcttgtaacggcgaatgtg
ggcgcggctcccaacaagagatttacataaattgaagttacaaacataca
ggtaaagtccattaaaatgaccttgatggtacaaatgaccctgctatccc
aaacaccatgaaagaatgcctattggggggaggtccgtggcaagccttgg
atttggttttgttgttaacaggtcttgt
gaattcacatatttacaagtctatagtgagagggaacttttatttgccta
tgctagcttcaaattcacaaacatcctgtctctcccttccaaatgctagg
gttataggatatgctactgttcctggcagtacaggggtttataatttggt
ctgtaccaatgttctactataacaattgaagttcacagctgataaaagtt
ttaacaatagaaagattgaaatagactagatatttaaaagacatttagaa
ataacttggaatatttaaaaagaattcttgaagttaaatggtttcaggcc
tctgcgttactctttagtgttgcactacacattctgaaatttttgttttt
ttcacatacatttgagaacattgttgccaacatttacaaaatagattgca
gggattttgcttgatagagtgttgagtctgctgactgagttagagttggc
atgttgacaagttttatagcttgtaaaaaaatagacttaatatttattct
tgtgtgatgtctgttttccctagagccattaccacattagtcatagctat
tttacattttctgataattataaaaccaatgttatatctgagcctcctag
tatttacatttctccaaaggccttgatgcctgcagtacccttgtttcttc
tgttaactttgggtatcaataagaaaatcttctaaagcgcagccatcact
ctgcagttcttctagtattgtctattctcttactgaagtcttgttgacac
tgtattaagcagcggaaaagacaaataattaatgttcttgtgattaaatg
ttagtctttattggaggcatattcctcgctgataacattcgaagtgtttc
taatctcttagattttccttctgcttgccacacatgtgagaaacgtaggt
gaaattgggttagaaaattgcctctccatctgggagtctggtaaaatcat
tttcatagaggctaggtcttgtttgcagcaaagcatatcttagatggcca
ctttccctttctctgccaagacatgaagtcattttcttggctcatcacca
tgagactgtgcattctggaggcaaggctcatgaaaagtgtgagagctata
aaactgtaagccctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86748632_86749291
seq2: B6Ng01-075A19.b_505_1163

seq1  TCTGAATTCATGCAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTCATGCAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAAAC  50

seq1  TTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTG  100

seq1  TACCGGTGATGGTAAACTCTCGTCCCGAGTTTTTTCTCGTCCCGGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGGTGATGGTAAACTCTCGTCCCGAGTTTTTTCTCGTCCCGGAATTT  150

seq1  GGCACCAATTGTTATTAAACGCGTTCTCACGCCCGGCCAGGAAGAACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAATTGTTATTAAACGCGTTCTCACGCCCGGCCAGGAAGAACACC  200

seq1  ACAGACCAGAATC-TTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGA  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACAGACCAGAATCTTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGA  250

seq1  GCAAGAGTGTAAGAAGCAAGAGAGCGAGAAAACGAAACCCCGTCCCTATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGTGTAAGAAGCAAGAGAGCGAGAAAACGAAACCCCGTCCCTATT  300

seq1  AAGGAGAATTATCCTTCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAATTATCCTTCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAG  350

seq1  CCCATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACATGGAGTGGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACATGGAGTGGAG  400

seq1  AACCACCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAG  450

seq1  CTGTCAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAAGA  500

seq1  GATTTACATAATTTGAAGTTACAAACATACAGGTAAAGTCAATAAAAATG  549
      ||||||||||| |||||||||||||||||||||||||||| || ||||||
seq2  GATTTACATAAATTGAAGTTACAAACATACAGGTAAAGTCCATTAAAATG  550

seq1  ACCTTGATGGTACAAATTGACCTGCTATTCCCAAACA-CATGGAAGAATG  598
      |||||||||||||||||   ||||||| ||||||||| |||| |||||||
seq2  ACCTTGATGGTACAAATGACCCTGCTA-TCCCAAACACCATGAAAGAATG  599

seq1  CCTATTGGGGGGAGGTCCGTGG-AAGCCTTGGTTTTGGTTTTGTTTGTTT  647
      |||||||||||||||||||||| ||||||||| ||||||||||||   ||
seq2  CCTATTGGGGGGAGGTCCGTGGCAAGCCTTGGATTTGGTTTTGTT--GTT  647

seq1  AACAGGGTCTTGT  660
      |||| ||||||||
seq2  AACA-GGTCTTGT  659

seq1: chr1_45757886_45759013
seq2: B6Ng01-075A19.g_65_1180 (reverse)

seq1  CTAGGGC-TACAGTTTTATAGCTCTCACAC-TTTCATGAGCTTTGCCTCC  48
      ||||||| |||||||||||||||||||||| |||||||||| ||||||||
seq2  CTAGGGCTTACAGTTTTATAGCTCTCACACTTTTCATGAGCCTTGCCTCC  50

seq1  AGGAATGCCACCAGGTCTCATGGTGATGAGCCAAGAAAAATGACTTCATG  98
      | ||||| |||   ||||||||||||||||||||| ||||||||||||||
seq2  A-GAATG-CAC--AGTCTCATGGTGATGAGCCAAG-AAAATGACTTCATG  95

seq1  TCTTTGGCAAGAGGAAAGGGAAAGTGGCCATTCTAAGATATGCTTTTGCT  148
      || ||||| ||| ||||||||||||||||| |||||||||||| ||||||
seq2  TC-TTGGC-AGA-GAAAGGGAAAGTGGCCA-TCTAAGATATGC-TTTGCT  140

seq1  GCAAACAAGACCTAGCCTCTATGAAAATGATTTTACCAGACTTCCAGATG  198
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCAAACAAGACCTAGCCTCTATGAAAATGATTTTACCAGACTCCCAGATG  190

seq1  GAGAGGCAATTTTCTAACCCCAATTTCACCTACGTTTTCTCACATGTGTG  248
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  GAGAGGCAATTTTCTAA-CCCAATTTCACCTACG-TTTCTCACATGTGTG  238

seq1  GCAAGCAGAAGGAAAATACTAAGAGATTAGAAACACTTTGAATGCTAACA  298
      ||||||||||||||||| |||||||||||||||||||| ||||| || ||
seq2  GCAAGCAGAAGGAAAAT-CTAAGAGATTAGAAACACTTCGAATGTTATCA  287

seq1  GCCAGGAATATGCCACCAATAAAAGACTAACATTTAATCACAAGAACATT  348
      || ||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  GCGAGGAATATGCCTCCAAT-AAAGACTAACATTTAATCACAAGAACATT  336

seq1  AATTATTTGTCTTTTGCTGCTGCTTAATACAGTGTCAACAAGACTTCAGT  398
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  AATTATTTGTCTTTT-CCGCTGCTTAATACAGTGTCAACAAGACTTCAGT  385

seq1  AAGAGAATAGACAATACTAGAAGAACTGCAGAGTGATGGCTGCGCTTTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATAGACAATACTAGAAGAACTGCAGAGTGATGGCTGCGCTTTAG  435

seq1  AAGATTTTCTTATTGATACCCAAAGTTAACAGAAGAAACAAGGGTACTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTCTTATTGATACCCAAAGTTAACAGAAGAAACAAGGGTACTGC  485

seq1  AGGCATCAAGGCCTTTGGAGAAATGTAAATACTAGGAGGCTCAGATATAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCAAGGCCTTTGGAGAAATGTAAATACTAGGAGGCTCAGATATAA  535

seq1  CATTGGTTTTATAATTATCAGAAAATGTAAAATAGCTATGACTAATGTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATTGGTTTTATAATTATCAGAAAATGTAAAATAGCTATGACTAATGTGG  585

seq1  TAATGGCTCTAGGGAAAACAGACATCACACAAGAATAAATATTAAGTCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCTCTAGGGAAAACAGACATCACACAAGAATAAATATTAAGTCTA  635

seq1  TTTTTTTACAAGCTATAAAACTTGTCAACATGCCAACTCTAACTCAGTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTACAAGCTATAAAACTTGTCAACATGCCAACTCTAACTCAGTCA  685

seq1  GCAGACTCAACACACTATCAAGCAAAATCCCTGCAATCTATTTTCTAAAT  748
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  GCAGACTCAACACTCTATCAAGCAAAATCCCTGCAATCTATTTTGTAAAT  735

seq1  GTTGGCAACAATGTTCTCAAATCTATGTGAAAAAAACAAAAATTTCAGAA  798
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTTGGCAACAATGTTCTCAAATGTATGTGAAAAAAACAAAAATTTCAGAA  785

seq1  TGTCTAGTGCAACACTAAAGAGTAACGCAGAGGCCTGAAACCATCTAACT  848
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGTAGTGCAACACTAAAGAGTAACGCAGAGGCCTGAAACCATTTAACT  835

seq1  TCAAGAATTCTTTTTAAATATTCCAAGTTATTTCTAAATGTCTTTTAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAATTCTTTTTAAATATTCCAAGTTATTTCTAAATGTCTTTTAAAT  885

seq1  ATCTAGTCTATTTCAATCTTTCTATTGTTAAAACTTTTATCAGCTGTGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTCTATTTCAATCTTTCTATTGTTAAAACTTTTATCAGCTGTGAA  935

seq1  CTTCAATTGTTATAGTAGAACATTGGTACAGACCAAATTATAAACCACTG  998
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTCAATTGTTATAGTAGAACATTGGTACAGACCAAATTATAAACCCCTG  985

seq1  TACTGCCAGGAACAGTAGCATATCCTATAACCCTAGCATTTGGAAGGCTG  1048
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  TACTGCCAGGAACAGTAGCATATCCTATAACCCTAGCATTTGGAAGGGAG  1035

seq1  AGACAGGATGTTTGTGAATTTGAAGCTAGCATAGGCAAATAAAAGTTCCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGATGTTTGTGAATTTGAAGCTAGCATAGGCAAATAAAAGTTCCC  1085

seq1  TCTC-CTATAGACTTGTAAATATGTGAATTC  1128
      |||| ||||||||||||||||||||||||||
seq2  TCTCACTATAGACTTGTAAATATGTGAATTC  1116