BAC Information

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BAC

Clone NameB6Ng01-075D06
Chromosome1 (Build37)
Map Location 129,650,521 - 129,716,934
singlet/doubletdoublet
Overlap geneAcmsd, Ccnt2, Ysk4
Upstream geneE030049G20Rik, LOC383559, Mgat5, LOC667090, Tmem163
Downstream geneRab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075D06.bB6Ng01-075D06.g
ACCDH891826DH891827
length1,208588
definitionDH891826|Mus musculus domesticus DNA, BAC clone: B6Ng01-075D06, 5' end.DH891827|Mus musculus domesticus DNA, BAC clone: B6Ng01-075D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,715,717 - 129,716,934)(129,650,521 - 129,651,108)
sequence
gaattctctacctgacctgacccttctcttccctactacctgcacttaga
acatgtgcaactgaaagtcacagaaaaacccaaacctgcttcagggggag
tattttttttctttatgtatttgaagggtgtggagatgatttgctgttgg
gacatgaggttttaggagctccatttcttcaggagctactgctcctgctg
aaatgctaatgtctcccaggtctgccctggtccctactcttgggcggtga
ccctctgttctaacctctcatcactccaagtccaccctctggactagcta
ttcttctcctcacttccataaaacacccagcaagaacaacttccagaaac
aatggctgattcagctcacaggtcaagggcacagtccttcatggtgggga
agccacagcagcaggagtttgaggcagctgctcacagggcatctgcagtc
aggaaacagagagagacggatgcaggtgctcagctcacggtatcctttct
gttcagcccagggccccagcccctggaacagttccagacatatttagggt
gggccttcgtaccttagttaacctaatttagaaattccttcacgtgcatg
cccagatgtgtgtctcctagacaaatctagactctgttaagttgacagtc
aatactaactctcatcacgagcccattggataaaaaagctttccctctag
tggttcaacatagcactggagacagggacactcactaccatggggcaaac
tcaaatgttgttcttttgtgttttgtgagtcgcagaaatgactccctaaa
gttttggtggtctaaagagtatatgattagacagatgaagtaaagactta
ccttattccaagcacacaggaagcagactcaagtggatctctgtgagttc
tagaccagtctacaaagctagttccaggacaggcaaggctacacagagaa
ctcctgtttttgaaaacaaacaaacaacaaccaaacaaacaactgacctt
agaacggaccatagagtggtcttattagggacccttcaggaatacacagg
ggagacaaacaaaacccagaaggcacttatgggggtgactgcaggtctgc
ctcctcactctggagaagctttagaatctgactgggctctgtgcattctt
tgggtgtgggccatccaggcggatcggatattctcatcaggaatagtgag
gcaatgtt
gaattctgttctgtgaggggaaagaaattatgattagattgagagtaata
acggctactgttgattgggtatatgtctttcaggcctctttcagatagct
tggctaatctgaacttcttctaggcagcttagcttgtctgagagagtttc
tcagtagtctttattgtttatatatgtttaggggaggggcctagtgtata
tggtcagtttcagggacttcctgagtttacccaggttgcctgtaggatga
actgttttcccttcctttacagtatcttgtgtctggatgactttactttc
aaaatggaaagtttcacttctcttttaatatcatgcatcttaataagctt
ctctgcatgtttcacctaaaatattccacttaaaacatcccatgtcttaa
ggcgcttccctccaagatggaggttttatctataatgaatttgctagaaa
caaataacaacaacacacactggtgaggctacaaaaaccacaaaactcac
acacatgcacgcacgagctgatgtgttttataaaaaagagagccaggata
tgtttgatagaacatggtgtggtgaggtgggaggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_129715717_129716934
seq2: B6Ng01-075D06.b_48_1255 (reverse)

seq1  AACATTTGCCTCACATATTTCTCTGATGAGAATATCAGATGCTGGCTGGG  50
      |||| ||||||||| ||||   |||||||||||||| ||| |  ||  ||
seq2  AACA-TTGCCTCAC-TATT--CCTGATGAGAATATCCGATCC--GCCTGG  44

seq1  ATGCCCCTCACCAAAAGAATGCAACAGAGCCAAGTCAGA-TCTAAAGC-T  98
      ||| ||| |||| ||||||||| |||||||| ||||||| |||||||| |
seq2  ATGGCCCACACCCAAAGAATGC-ACAGAGCCCAGTCAGATTCTAAAGCTT  93

seq1  CTCCAGAGTGAGGAGGCAGGACCTGCCAGTCA-CCCCATAATGTGC--TC  145
      |||||||||||||||||| |||||| |||||| |||||||| ||||  ||
seq2  CTCCAGAGTGAGGAGGCA-GACCTG-CAGTCACCCCCATAA-GTGCCTTC  140

seq1  TGGGGTTTTTGTTTTGTCTCACCTTGTGTATTCCTGAAGGGTCCCTAATT  195
      ||||  ||||| |||||||| || ||||||||||||||||||||||||| 
seq2  TGGG--TTTTG-TTTGTCTC-CCCTGTGTATTCCTGAAGGGTCCCTAATA  186

seq1  AGA-CACTCTATGGTCTGTCTTAAGGTCAGTTTGTTTGTTTGTTTGTTTG  244
      ||| |||||||||||| ||  ||||||||| ||||||||||| ||| |||
seq2  AGACCACTCTATGGTCCGTTCTAAGGTCAG-TTGTTTGTTTGGTTG-TTG  234

seq1  TTTGTTTGTTTTTCAAAACAGGAGTTCTCTGTGTAGCCTTGGCTGTCCTG  294
      ||||||||||||  ||||||||||||||||||||||||||| ||||||||
seq2  TTTGTTTGTTTTCAAAAACAGGAGTTCTCTGTGTAGCCTTGCCTGTCCTG  284

seq1  GAACTAGCTTTGTAGACTGGTCTAGAACTCACAGAGATCCACTTGAGTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGCTTTGTAGACTGGTCTAGAACTCACAGAGATCCACTTGAGTCT  334

seq1  GCTTCCTGTGTGCTTGGAATAAGGTAAGTCTTTACTTCATCTGTCTAATC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGTGTGCTTGGAATAAGGTAAGTCTTTACTTCATCTGTCTAATC  384

seq1  ATATACTCTTTAGACCACCAAAACTTTAGGGAGTCATTTCTGCGACTCAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTCTTTAGACCACCAAAACTTTAGGGAGTCATTTCTGCGACTCAC  434

seq1  AAAACACAAAAGAACAACATTTGAGTTTGCCCCATGGTAGTGAGTGTCCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACAAAAGAACAACATTTGAGTTTGCCCCATGGTAGTGAGTGTCCC  484

seq1  TGTCTCCAGTGCTATGTTGAACCACTAGAGGGAAAGCTTTTTTATCCAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAGTGCTATGTTGAACCACTAGAGGGAAAGCTTTTTTATCCAAT  534

seq1  GGGCTCGTGATGAGAGTTAGTATTGACTGTCAACTTAACAGAGTCTAGAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCGTGATGAGAGTTAGTATTGACTGTCAACTTAACAGAGTCTAGAT  584

seq1  TTGTCTAGGAGACACACATCTGGGCATGCACGTGAAGGAATTTCTAAATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGGAGACACACATCTGGGCATGCACGTGAAGGAATTTCTAAATT  634

seq1  AGGTTAACTAAGGTACGAAGGCCCACCCTAAATATGTCTGGAACTGTTCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAACTAAGGTACGAAGGCCCACCCTAAATATGTCTGGAACTGTTCC  684

seq1  AGGGGCTGGGGCCCTGGGCTGAACAGAAAGGATACCGTGAGCTGAGCACC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGGGGCCCTGGGCTGAACAGAAAGGATACCGTGAGCTGAGCACC  734

seq1  TGCATCCGTCTCTCTCTGTTTCCTGACTGCAGATGCCCTGTGAGCAGCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCGTCTCTCTCTGTTTCCTGACTGCAGATGCCCTGTGAGCAGCTG  784

seq1  CCTCAAACTCCTGCTGCTGTGGCTTCCCCACCATGAAGGACTGTGCCCTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACTCCTGCTGCTGTGGCTTCCCCACCATGAAGGACTGTGCCCTT  834

seq1  GACCTGTGAGCTGAATCAGCCATTGTTTCTGGAAGTTGTTCTTGCTGGGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTGAGCTGAATCAGCCATTGTTTCTGGAAGTTGTTCTTGCTGGGT  884

seq1  GTTTTATGGAAGTGAGGAGAAGAATAGCTAGTCCAGAGGGTGGACTTGGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGGAAGTGAGGAGAAGAATAGCTAGTCCAGAGGGTGGACTTGGA  934

seq1  GTGATGAGAGGTTAGAACAGAGGGTCACCGCCCAAGAGTAGGGACCAGGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGAGGTTAGAACAGAGGGTCACCGCCCAAGAGTAGGGACCAGGG  984

seq1  CAGACCTGGGAGACATTAGCATTTCAGCAGGAGCAGTAGCTCCTGAAGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTGGGAGACATTAGCATTTCAGCAGGAGCAGTAGCTCCTGAAGAA  1034

seq1  ATGGAGCTCCTAAAACCTCATGTCCCAACAGCAAATCATCTCCACACCCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCTCCTAAAACCTCATGTCCCAACAGCAAATCATCTCCACACCCT  1084

seq1  TCAAATACATAAAGAAAAAAAATACTCCCCCTGAAGCAGGTTTGGGTTTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACATAAAGAAAAAAAATACTCCCCCTGAAGCAGGTTTGGGTTTT  1134

seq1  TCTGTGACTTTCAGTTGCACATGTTCTAAGTGCAGGTAGTAGGGAAGAGA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACTTTCAGTTGCACATGTTCTAAGTGCAGGTAGTAGGGAAGAGA  1184

seq1  AGGGTCAGGTCAGGTAGAGAATTC  1218
      ||||||||||||||||||||||||
seq2  AGGGTCAGGTCAGGTAGAGAATTC  1208

seq1: chr1_129650521_129651108
seq2: B6Ng01-075D06.g_70_657

seq1  GAATTCTGTTCTGTGAGGGGAAAGAAATTATGATTAGATTGAGAGTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCTGTGAGGGGAAAGAAATTATGATTAGATTGAGAGTAATA  50

seq1  ACGGCTACTGTTGATTGGGTATATGTCTTTCAGGCCTCTTTCAGATAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTACTGTTGATTGGGTATATGTCTTTCAGGCCTCTTTCAGATAGCT  100

seq1  TGGCTAATCTGAACTTCTTCTAGGCAGCTTAGCTTGTCTGAGAGAGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAATCTGAACTTCTTCTAGGCAGCTTAGCTTGTCTGAGAGAGTTTC  150

seq1  TCAGTAGTCTTTATTGTTTATATATGTTTAGGGGAGGGGCCTAGTGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGTCTTTATTGTTTATATATGTTTAGGGGAGGGGCCTAGTGTATA  200

seq1  TGGTCAGTTTCAGGGACTTCCTGAGTTTACCCAGGTTGCCTGTAGGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGTTTCAGGGACTTCCTGAGTTTACCCAGGTTGCCTGTAGGATGA  250

seq1  ACTGTTTTCCCTTCCTTTACAGTATCTTGTGTCTGGATGACTTTACTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTCCCTTCCTTTACAGTATCTTGTGTCTGGATGACTTTACTTTC  300

seq1  AAAATGGAAAGTTTCACTTCTCTTTTAATATCATGCATCTTAATAAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAAAGTTTCACTTCTCTTTTAATATCATGCATCTTAATAAGCTT  350

seq1  CTCTGCATGTTTCACCTAAAATATTCCACTTAAAACATCCCATGTCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATGTTTCACCTAAAATATTCCACTTAAAACATCCCATGTCTTAA  400

seq1  GGCGCTTCCCTCCAAGATGGAGGTTTTATCTATAATGAATTTGCTAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTTCCCTCCAAGATGGAGGTTTTATCTATAATGAATTTGCTAGAAA  450

seq1  CAAATAACAACAACACACACTGGTGAGGCTACAAAAACCACAAAACTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACAACAACACACACTGGTGAGGCTACAAAAACCACAAAACTCAC  500

seq1  ACACATGCACGCACGAGCTGATGTGTTTTATAAAAAAGAGAGCCAGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCACGCACGAGCTGATGTGTTTTATAAAAAAGAGAGCCAGGATA  550

seq1  TGTTTGATAGAACATGGTGTGGTGAGGTGGGAGGGGTG  588
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATAGAACATGGTGTGGTGAGGTGGGAGGGGTG  588