BAC Information

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BAC

Clone NameB6Ng01-075E24
Chromosome16 (Build37)1 (Build37)
Map Location 34,305,915 - 34,306,97256,514,019 - 56,514,535
singlet/doubletsingletsinglet
Overlap geneKalrn
Upstream geneZfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, LOC100043670
Downstream geneRopn1, Ccdc14, Mylk, Ptplb, Adcy5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075E24.bB6Ng01-075E24.g
ACCDH891905DH891906
length1,060908
definitionDH891905|Mus musculus domesticus DNA, BAC clone: B6Ng01-075E24, 5' end.DH891906|Mus musculus domesticus DNA, BAC clone: B6Ng01-075E24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(34,305,915 - 34,306,972)(56,514,019 - 56,514,535)
sequence
gaattcatccagacagctccagatggcctgagcaggcagctaactcatct
gcttttactttcctgccagccgcaggtctcagagctgattggcacatcag
ctgtgctcacccctggggactaaggcatctttctgatgactccatcatgt
cagtcaggaaggggcaccacaaaggagttaggagagcccaagaaggaaga
gcaagcctgaaggcctctcctcatgccaactcccctggctcccaggatgt
gtaacaatggtaaagatggtccctatcctgcctgtttaccttgggcacct
agtgaagactcttgtcagcaggagctgtgaagacatgtgcccaggctctc
actttctcatgctatcttgctctttttcgactatactcacccaacaaccc
aggagaatggaaggaaagtgaactggaacttcctgggtcagatactgaat
ttcctcggtagccatgactacaggagcccgacaacaggtgtctgcatcca
agtgtctcactctgcctccccaggaaagtcagagggagaagaccttggcc
ttgatcttgggtctagattctactcagctttcctacccagtgtatgatcc
tctgggcaaatatcccagggtccccagagtcagagaaacagaaaacacaa
gggagaaagaacaggcaatttcctctggatgggcactggggcatgggtac
atttttacagtcagaaacaatcatctcattattacctaaagtgatgaacg
agtagggactaacacaataacagaaaagacagacaaagccaaacgtaacc
tctgaccatgggatgtacagtgattgatagcccttgctttaaatctggtt
tcaaaggtccagctttgttaatcaataatctaaaagccccaatatgctgc
cccaattgtagtgagtgagaatttgggtttcttaaaaaacccagttatat
tatgtgaatatgtttttgtttagtcccaggtgaggatacggggctgcttt
agtttgttccacagtcgctaattatgattgtcttgtgctctagggggaag
gaggggagtg
gaattcttgaccaccagagcttgctgttggtgtgaatttggatgcattaa
gagcagaacaagaatttacagggattcgaggttcttcatattttaaatga
tagaaaggccatgctgaggtttagctggacacatagtagagttacactgg
aagggatcttaactttagatcacagagtgcccaactccttctagtacagc
ggttctcaaccccgtgggtcatgactcctttgggaattgaaaagacactt
tcacaggagtcacctaacaccataggagaacacatatttatattacaaat
cataatagtggcaagattataggtatagagtagcagtgaaagtaatttta
tggtggggggcaggcagccaccacaatattaggaactgtgataaaggtta
cagtcttagaaggttgagaaccactgctccagcagcagcattatgtctgt
ggtcctagggagcagttgagggaggagacacatgatctgagtcagatgcc
tagaagagacagtgacgctggtaatagtccagggatccatcccataatta
gcctccaaacgatgacaccattgcatacactagtaagcttttcctgaaag
gaccctgatatagctgtctcttatgagactaggccggggcctagcaaaca
cagaagtggatgctcacagtcagctattggatggatcacagggcccccaa
tggaggagctagagaaagtacccaaggagctaaagagatctgcaaccctg
cagtgcaacaacattatgaactaaccagtaccccggagctcttgactcta
gctgcatatgtatcaaaagatggcctagtcagccatcactggaaagagag
gcccattggacacgcaaactgtatatgccccagtacaggggaatgccagg
gccaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_34305915_34306972
seq2: B6Ng01-075E24.b_49_1108

seq1  GAATTCATCCAGACAGCTCCAGATGGCCTGAGCAGGCAGCTAACTCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCAGACAGCTCCAGATGGCCTGAGCAGGCAGCTAACTCATCT  50

seq1  GCTTTTACTTTCCTGCCAGCCGCAGGTCTCAGAGCTGATTGGCACATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTACTTTCCTGCCAGCCGCAGGTCTCAGAGCTGATTGGCACATCAG  100

seq1  CTGTGCTCACCCCTGGGGACTAAGGCATCTTTCTGATGACTCCATCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCACCCCTGGGGACTAAGGCATCTTTCTGATGACTCCATCATGT  150

seq1  CAGTCAGGAAGGGGCACCACAAAGGAGTTAGGAGAGCCCAAGAAGGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGGAAGGGGCACCACAAAGGAGTTAGGAGAGCCCAAGAAGGAAGA  200

seq1  GCAAGCCTGAAGGCCTCTCCTCATGCCAACTCCCCTGGCTCCCAGGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCTGAAGGCCTCTCCTCATGCCAACTCCCCTGGCTCCCAGGATGT  250

seq1  GTAACAATGGTAAAGATGGTCCCTATCCTGCCTGTTTACCTTGGGCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAATGGTAAAGATGGTCCCTATCCTGCCTGTTTACCTTGGGCACCT  300

seq1  AGTGAAGACTCTTGTCAGCAGGAGCTGTGAAGACATGTGCCCAGGCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGACTCTTGTCAGCAGGAGCTGTGAAGACATGTGCCCAGGCTCTC  350

seq1  ACTTTCTCATGCTATCTTGCTCTTTTTCGACTATACTCACCCAACAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCATGCTATCTTGCTCTTTTTCGACTATACTCACCCAACAACCC  400

seq1  AGGAGAATGGAAGGAAAGTGAACTGGAACTTCCTGGGTCAGATACTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATGGAAGGAAAGTGAACTGGAACTTCCTGGGTCAGATACTGAAT  450

seq1  TTCCTCGGTAGCCATGACTACAGGAGCCCGACAACAGGTGTCTGCATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCGGTAGCCATGACTACAGGAGCCCGACAACAGGTGTCTGCATCCA  500

seq1  AGTGTCTCACTCTGCCTCCCCAGGAAAGTCAGAGGGAGAAGACCTTGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTCACTCTGCCTCCCCAGGAAAGTCAGAGGGAGAAGACCTTGGCC  550

seq1  TTGATCTTGGGTCTAGATTCTACTCAGCTTTCCTACCCAGTGTATGATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTGGGTCTAGATTCTACTCAGCTTTCCTACCCAGTGTATGATCC  600

seq1  TCTGGGCAAATATCCCAGGGTCCCCAGAGTCAGAGAAACAGAAAACACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCAAATATCCCAGGGTCCCCAGAGTCAGAGAAACAGAAAACACAA  650

seq1  GGGAGAAAGAACAGGCAATTTCCTCTGGATGGGCACTGGGGCATGGGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAGAACAGGCAATTTCCTCTGGATGGGCACTGGGGCATGGGTAC  700

seq1  ATTTTTACAGTCAGAAACAATCATCTCATTATTACCTAAAGTGATGAACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACAGTCAGAAACAATCATCTCATTATTACCTAAAGTGATGAACG  750

seq1  AGTAGGGACTAACACAATAACAGAAAAGACAGACAAAGCCAAACGTAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGACTAACACAATAACAGAAAAGACAGACAAAGCCAAACGTAACC  800

seq1  TCTGACCATGGGATGTACAGTGATTGATAGCCCTTGCTTTAAATCTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCATGGGATGTACAGTGATTGATAGCCCTTGCTTTAAATCTGGTT  850

seq1  TCAAAGGTCCAGCTTTGTTAATCAATAATCTAAAAGCCCCAATATGCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTCCAGCTTTGTTAATCAATAATCTAAAAGCCCCAATATGCTGC  900

seq1  CCCAATTGTAGTGAGTGAGAATTTGGGTTTCTTAAAAAACCCAGTTATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTGTAGTGAGTGAGAATTTGGGTTTCTTAAAAAACCCAGTTATAT  950

seq1  TATGTGAATATGTTTTTGTTTTAGTCCCAGGTGAGGGATACGGGGCTGCT  1000
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  TATGTGAATATGTTTTTG-TTTAGTCCCAGGTGA-GGATACGGGGCTGCT  998

seq1  TTAGTTTG-TCCACAGTCGCTAATTATGATTGTCTTGTGCTCTAGGGG--  1047
      |||||||| |||||||||||||||||||||||||||||||||||||||  
seq2  TTAGTTTGTTCCACAGTCGCTAATTATGATTGTCTTGTGCTCTAGGGGGA  1048

seq1  AGGA-GGGAGTG  1058
      |||| |||||||
seq2  AGGAGGGGAGTG  1060

seq1: chr1_56514019_56514535
seq2: B6Ng01-075E24.g_479_853 (reverse)

seq1  GGGGTACTGGTTAGTTCATGTTGTTGTTCCACCTATAGGGTTGCAGACCC  50
      |||||||||||||||||||  ||||||| || ||  ||||||||||| | 
seq2  GGGGTACTGGTTAGTTCATAATGTTGTTGCA-CTGCAGGGTTGCAGATCT  49

seq1  CTTCAGCTAGTTGGGTGCTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGA  100
      ||| ||||  |||||| |||||||||||||||||||||||||||||||||
seq2  CTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGA  99

seq1  TCCATCCAATAGCTGACTGTGAGCATTCACTTCTGTATTTGCCAGAGACT  150
      |||||||||||||||||||||||||| ||||||||| ||||| ||   | 
seq2  TCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCC  149

seq1  GGCATAGCCTCATACAAGACAGCTGCATTTCTTAACCTGTGTCAAGAGAC  200
      ||| ||| ||||||  ||||||||  || ||                   
seq2  GGCCTAGTCTCATAAGAGACAGCT--ATATC-------------------  178

seq1  TCCCTAGAGGCTCAATTCTCATCTGTAAAGGAAAGTAGCCCTTGCCTTAT  250
             ||| ||  |||      | ||||   | |||    |||     
seq2  -------AGGGTCCTTTC----AGGAAAAGCTTACTAGTGTATGC-----  212

seq1  AAGGTGCTTGTGATTGTTTTGAAGACAGATGAAAGGCTGCA--CCTGAGG  298
      || |    ||| || | |||| || |  || |  || || |  ||||   
seq2  AATG---GTGTCATCG-TTTGGAGGCTAATTATGGGATGGATCCCTGGAC  258

seq1  CATGACAGGGGCTCACTGGTCTCTCAGAGTTCACTCTTTTAACAAAAACC  348
       || ||  | | ||||| ||||||          |||         |  |
seq2  TATTACCAGCG-TCACT-GTCTCT----------TCT---------AGGC  287

seq1  ATACCACAAGTTCAAATTAATATTATACACACTAA---GCTTTCTGGAAC  395
      ||   ||    ||| || |    | | | | || |   |||  || | ||
seq2  ATCTGAC----TCAGATCATGTGTCTCCTCCCTCAACTGCTCCCTAGGAC  333

seq1  CACTTGTAACTGTTACTGGTTATTTGGCTATTCCATTTCATTTTAAAGAT  445
      |||                                           ||| 
seq2  CAC-------------------------------------------AGA-  339

seq1  GTTCATAAAGAACATTAATTGAATTGGCTTTGGCTTTCTGTGTGTGGCT-  494
         |||||                                  ||  ||| 
seq2  ---CATAA----------------------------------TGCTGCTG  352

seq1  CTAGAGCAGTGGTTCTCAACCTT  517
      || ||||||||||||||||||||
seq2  CTGGAGCAGTGGTTCTCAACCTT  375