BAC Information

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BAC

Clone NameB6Ng01-075F01
Chromosome1 (Build37)
Map Location 168,619,310 - 168,744,995
singlet/doubletdoublet
Overlap geneLOC240895
Upstream geneRcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik
Downstream geneLOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075F01.bB6Ng01-075F01.g
ACCDH891907DH891908
length1,1741,139
definitionDH891907|Mus musculus domesticus DNA, BAC clone: B6Ng01-075F01, 5' end.DH891908|Mus musculus domesticus DNA, BAC clone: B6Ng01-075F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,619,310 - 168,620,490)(168,743,848 - 168,744,995)
sequence
gaattcagtatttctagtctaacaatatagatttgggctcctttaattgg
caaatctgctatttgtcttgccaataaaaataagccagaactatcatgaa
taaaatctcagtatataggtctgtggtaaatacggtccccgaacagagct
gactccttaaaattccgttttttaggagaattaattttcatgcccacttt
aattaaaacatgcatgtatattgaatactaatgttagttgtcagacatta
ttatgtagcctgacctgtaacgtgatgtgatgctattgagagactacaga
gtagtttctctttcttcaaaccatttccttgacccctttattacttaaat
aataaaaaagcaatctcaaatctacaaaggtgccaaggaccctactaatt
attaaaatacttgacaatatgatggggaaatagtttcagaaataagcaca
aaaacaatttcatgattcggggtttatctagtgcagtgtttcttcccctg
tgaatcatgatcattggaaaacatgtatttctgaaggtcttaggaacccc
taaccataaatttatttgttttgctacttcataactgtaactttgctact
gagtggtgtctcagttcctaagaccatcagaaataagtgttttcacatga
tcatgaccctcagagtgtgaactgctgatctagcataatgataagtatat
tacatgtgacagaatcataaatggatttgatacaaaatttgtaagttata
tctatttcttcctttctataaacaagcatggaactttgaataacatttga
caagagctagtgtggggtatgagttctttcagttgacatactgtttttaa
gatatagtgccctgaggaaaaccaacaaaattgaaataaggaatgaaatt
aggatttagagcaaagttacagcattgaagacagaggttagaaaccagaa
cagaagaatagcaattgaagagaagtgatgaatagctgaagaccaaaatg
tttagcatcagatgggctgaaaaatagattgcccaccgaggaaacaacag
agatgactcccagtgttcagtatttgaaagaactcattcagctgtgagtt
cctcacaatgcagaggtcatgaagtctgagaagggctggaattatcctta
caaaacgtcctcctagtcttccag
gaattccaaaggctgctgtggcattagtcaacttgatagcttatgtattt
tgttttaaaaattgctattcatattttgcttatagaatgggagatgtttc
agattgtaaaaacagagattatttctcaatggaagagcaacagaaaagtt
gtaagttagtacaattagttatattttcctaaaccttttgtagcattagg
tatttctttattcccacacttttacattattttaaatatgtctgtaagtt
ttcctagttgaaaaagaagagtatttgtgtggaaggggtgtcaagagagc
actaggcaggtaagagcacttgcctctcttgtggagagccagacttctct
tcctcacacccactctgggcaactcacagtcacgtctaactccagctcag
tggatccaacacccacttctggcctcactgggcacctgtatagatatggc
agacacacactcatgaaaataaatttaaaaattaatactaaaaagagtgt
aagagccagagaggatggagaacatgaggagaaagagtcagctgaggaaa
gctcacatgaactcacagagactgaagcagcaagcacggggccaacctgg
gtctgcaccagggcctctgtgcttatatcatggcttctagtttagtattt
ttatgggactcctgaatgtgtaaacaagtgcctgctcttggggtgagaat
gagagaccttgtccaacttcagtgtgatggttttttgttttaatagttat
aatattaaatactaatgttattaaatattattaatacttagaataagttt
agttacaatatcttattctgtcctgtttgagcgttgtctcttaaaagctt
gttatctttcaaaaattttttttattcttttctcatacattccatcccaa
ccatactttgctctccctctgctcctcccagttgggtcctccccacttcc
cctccccttcagatcccctcctcctccacttccattcagaaagagcagcc
tccttagggataccaagtgaatatagcatgtgtaacaaggagacagtggg
ggatagtcttgactcaggtaccagtgacgaactctgacagacacccacga
ggcagcacctagatcacacttaataacagatctcatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_168619310_168620490
seq2: B6Ng01-075F01.b_45_1218

seq1  GAATTCAGTATTTCTAGTCTAACAATATAGATTTGGGCTCCTTTAATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATTTCTAGTCTAACAATATAGATTTGGGCTCCTTTAATTGG  50

seq1  CAAATCTGCTATTTGTCTTGCCAATAAAAATAAGCCAGAACTATCATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGCTATTTGTCTTGCCAATAAAAATAAGCCAGAACTATCATGAA  100

seq1  TAAAATCTCAGTATATAGGTCTGTGGTAAATACGGTCCCCGAACAGAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTCAGTATATAGGTCTGTGGTAAATACGGTCCCCGAACAGAGCT  150

seq1  GACTCCTTAAAATTCCGTTTTTTAGGAGAATTAATTTTCATGCCCACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTTAAAATTCCGTTTTTTAGGAGAATTAATTTTCATGCCCACTTT  200

seq1  AATTAAAACATGCATGTATATTGAATACTAATGTTAGTTGTCAGACATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAACATGCATGTATATTGAATACTAATGTTAGTTGTCAGACATTA  250

seq1  TTATGTAGCCTGACCTGTAACGTGATGTGATGCTATTGAGAGACTACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGCCTGACCTGTAACGTGATGTGATGCTATTGAGAGACTACAGA  300

seq1  GTAGTTTCTCTTTCTTCAAACCATTTCCTTGACCCCTTTATTACTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTCTCTTTCTTCAAACCATTTCCTTGACCCCTTTATTACTTAAAT  350

seq1  AATAAAAAAGCAATCTCAAATCTACAAAGGTGCCAAGGACCCTACTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAAGCAATCTCAAATCTACAAAGGTGCCAAGGACCCTACTAATT  400

seq1  ATTAAAATACTTGACAATATGATGGGGAAATAGTTTCAGAAATAAGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATACTTGACAATATGATGGGGAAATAGTTTCAGAAATAAGCACA  450

seq1  AAAACAATTTCATGATTCGGGGTTTATCTAGTGCAGTGTTTCTTCCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATTTCATGATTCGGGGTTTATCTAGTGCAGTGTTTCTTCCCCTG  500

seq1  TGAATCATGATCATTGGAAAACATGTATTTCTGAAGGTCTTAGGAACCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATGATCATTGGAAAACATGTATTTCTGAAGGTCTTAGGAACCCC  550

seq1  TAACCATAAATTTATTTGTTTTGCTACTTCATAACTGTAACTTTGCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATAAATTTATTTGTTTTGCTACTTCATAACTGTAACTTTGCTACT  600

seq1  GAGTGGTGTCTCAGTTCCTAAGACCATCAGAAATAAGTGTTTTCACATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTGTCTCAGTTCCTAAGACCATCAGAAATAAGTGTTTTCACATGA  650

seq1  TCATGACCCTCAGAGTGTGAACTGCTGATCTAGCATAATGATAAGTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACCCTCAGAGTGTGAACTGCTGATCTAGCATAATGATAAGTATAT  700

seq1  TACATGTGACAGAATCATAAATGGATTTGATACAAAATTTGTAAGTTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGACAGAATCATAAATGGATTTGATACAAAATTTGTAAGTTATA  750

seq1  TCTATTTCTTCCTTTCTATAAACAAGCATGGAACTTTGAATAACATTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCTTCCTTTCTATAAACAAGCATGGAACTTTGAATAACATTTGA  800

seq1  CAAGAGCTAGTGTGGGGTATGAGTTCTTTCAGTTGACATACTGTTTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCTAGTGTGGGGTATGAGTTCTTTCAGTTGACATACTGTTTTTAA  850

seq1  GATATAGTGCCCTGAGGAAAACCAACAAAATTGAAATAAGGAATGAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGTGCCCTGAGGAAAACCAACAAAATTGAAATAAGGAATGAAATT  900

seq1  AGGATTTAGAGCAAAGTTACAGCATTGAAGACAGAGGTTAGAAACCAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTAGAGCAAAGTTACAGCATTGAAGACAGAGGTTAGAAACCAGAA  950

seq1  CAGAAGAATAGCAATTGAAGAGAAGGTGATGAATAGCTGAAGACCAAAAT  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAGAAGAATAGCAATTGAAGAGAA-GTGATGAATAGCTGAAGACCAAAAT  999

seq1  GTTTAGCATCAGGATGGGCTGAAAAATAGATTGCCCACCGAGGAAACAAC  1050
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCATCA-GATGGGCTGAAAAATAGATTGCCCACCGAGGAAACAAC  1048

seq1  AGAGAATGAACTCCCAGTGTTCAGTATTTGAAAGAACTCATTCAGCCTGG  1100
      |||| ||| |||||||||||||||||||||||||||||||||||||   |
seq2  AGAG-ATG-ACTCCCAGTGTTCAGTATTTGAAAGAACTCATTCAGC--TG  1094

seq1  TGGAGTCCTCACAATGCAGAGGTCATGAAGTTCTGAG-AGGGCTGG-ATT  1148
      ||   ||||||||||||||||||||||||| |||||| |||||||| |||
seq2  TGAGTTCCTCACAATGCAGAGGTCATGAAG-TCTGAGAAGGGCTGGAATT  1143

seq1  ATCCTAACAAAAACGTCCTCTCTAGTCTCCCAG  1181
      ||||| || ||||||||||| ||||||| ||||
seq2  ATCCTTAC-AAAACGTCCTC-CTAGTCTTCCAG  1174

seq1: chr1_168743848_168744995
seq2: B6Ng01-075F01.g_66_1204 (reverse)

seq1  TTCATGAGATCCTGTTTATTAAGTTGTTGATCTTAGTGCCTGCTCTGTTG  50
      |||||||||| ||| |||||||||   ||||||  ||| ||||   || |
seq2  TTCATGAGAT-CTG-TTATTAAGT--GTGATCTAGGTG-CTGCCTCGTGG  45

seq1  GTGTTCTGTTCAGGAAGTCGTCACTGGTACCTGAGTTCAAGACTATCCCC  100
      ||| |||| ||| ||  |||||||||||||||||| ||||||||||||||
seq2  GTG-TCTG-TCA-GAGTTCGTCACTGGTACCTGAG-TCAAGACTATCCCC  91

seq1  CACTGTCT-CTTGTTACACATGCTATATTCACTTGGTATCCCT-AGGAGG  148
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  CACTGTCTCCTTGTTACACATGCTATATTCACTTGGTATCCCTAAGGAGG  141

seq1  CCTGCTCTTTTCTGAATGGAAGTGGAGGAGGAGGGGATCTGAAGGGGAGG  198
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  -CTGCTC-TTTCTGAATGGAAGTGGAGGAGGAGGGGATCTGAAGGGGAGG  189

seq1  GGAAGTGGGGAGGACCCAACTGGGAGGAGCAGAGGGAGAGCAAAGTATGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGGGAGGACCCAACTGGGAGGAGCAGAGGGAGAGCAAAGTATGG  239

seq1  TTGGGATGGAATGTATGAGAAAAGAATAAAAAAAATTTTTGAAAGATAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATGGAATGTATGAGAAAAGAATAAAAAAAATTTTTGAAAGATAAC  289

seq1  AAGCTTTTAAGAGACAACGCTCAAACAGGACAGAATAAGATATTGTAACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTAAGAGACAACGCTCAAACAGGACAGAATAAGATATTGTAACT  339

seq1  AAACTTATTCTAAGTATTAATAATATTTAATAACATTAGTATTTAATATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATTCTAAGTATTAATAATATTTAATAACATTAGTATTTAATATT  389

seq1  ATAACTATTAAAACAAAAAACCATCACACTGAAGTTGGACAAGGTCTCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTATTAAAACAAAAAACCATCACACTGAAGTTGGACAAGGTCTCTC  439

seq1  ATTCTCACCCCAAGAGCAGGCACTTGTTTACACATTCAGGAGTCCCATAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACCCCAAGAGCAGGCACTTGTTTACACATTCAGGAGTCCCATAA  489

seq1  AAATACTAAACTAGAAGCCATGATATAAGCACAGAGGCCCTGGTGCAGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTAAACTAGAAGCCATGATATAAGCACAGAGGCCCTGGTGCAGAC  539

seq1  CCAGGTTGGCCCCGTGCTTGCTGCTTCAGTCTCTGTGAGTTCATGTGAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTGGCCCCGTGCTTGCTGCTTCAGTCTCTGTGAGTTCATGTGAGC  589

seq1  TTTCCTCAGCTGACTCTTTCTCCTCATGTTCTCCATCCTCTCTGGCTCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAGCTGACTCTTTCTCCTCATGTTCTCCATCCTCTCTGGCTCTT  639

seq1  ACACTCTTTTTAGTATTAATTTTTAAATTTATTTTCATGAGTGTGTGTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTTTTTAGTATTAATTTTTAAATTTATTTTCATGAGTGTGTGTCT  689

seq1  GCCATATCTATACAGGTGCCCAGTGAGGCCAGAAGTGGGTGTTGGATCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATCTATACAGGTGCCCAGTGAGGCCAGAAGTGGGTGTTGGATCCA  739

seq1  CTGAGCTGGAGTTAGACGTGACTGTGAGTTGCCCAGAGTGGGTGTGAGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGGAGTTAGACGTGACTGTGAGTTGCCCAGAGTGGGTGTGAGGA  789

seq1  AGAGAAGTCTGGCTCTCCACAAGAGAGGCAAGTGCTCTTACCTGCCTAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTCTGGCTCTCCACAAGAGAGGCAAGTGCTCTTACCTGCCTAGT  839

seq1  GCTCTCTTGACACCCCTTCCACACAAATACTCTTCTTTTTCAACTAGGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTGACACCCCTTCCACACAAATACTCTTCTTTTTCAACTAGGAA  889

seq1  AACTTACAGACATATTTAAAATAATGTAAAAGTGTGGGAATAAAGAAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACAGACATATTTAAAATAATGTAAAAGTGTGGGAATAAAGAAATA  939

seq1  CCTAATGCTACAAAAGGTTTAGGAAAATATAACTAATTGTACTAACTTAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGCTACAAAAGGTTTAGGAAAATATAACTAATTGTACTAACTTAC  989

seq1  AACTTTTCTGTTGCTCTTCCATTGAGAAATAATCTCTGTTTTTACAATCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCTGTTGCTCTTCCATTGAGAAATAATCTCTGTTTTTACAATCT  1039

seq1  GAAACATCTCCCATTCTATAAGCAAAATATGAATAGCAATTTTTAAAACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATCTCCCATTCTATAAGCAAAATATGAATAGCAATTTTTAAAACA  1089

seq1  AAATACATAAGCTATCAAGTTGACTAATGCCACAGCAGCCTTTGGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATAAGCTATCAAGTTGACTAATGCCACAGCAGCCTTTGGAATTC  1139