BAC Information

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BAC

Clone NameB6Ng01-075J05
Chromosome1 (Build37)
Map Location 165,983,735 - 166,122,085
singlet/doubletdoublet
Overlap geneSele, Sell, Selp, F5
Upstream gene4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik
Downstream geneSlc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075J05.bB6Ng01-075J05.g
ACCDH892097DH892098
length5211,041
definitionDH892097|Mus musculus domesticus DNA, BAC clone: B6Ng01-075J05, 5' end.DH892098|Mus musculus domesticus DNA, BAC clone: B6Ng01-075J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,983,735 - 165,984,439)(166,121,053 - 166,122,085)
sequence
acctacaagtcctcatgtgcctttcaatgcaatgagggctttagcttgca
tggctcagctcaacttgagtgcacatctcagggaaagtggacccaggaag
tcccctcctgccaaggtaacactgagttcagactctcatgacacacatca
actccgtggttttgtggtatgggtttcttgacttccgctatgggcatgtc
ctttgcagtggtacaatgtccaagccttgacgtcccgggaaagatgaaca
tgagctgcagcggaacagcagttttcggcacagtgtgtgagtttacatgt
cctgatgattggacactcaatggatctgcagttctgacgtgtggtgccac
gggacgctggtctgggatgccgcctacctgtgaaggtaaggcactgatgg
atggtggttgccttggggagtagagggaagaggggtgttatgttgctaag
gaagctaactgtccattatgtccaaatcatttttttttttttttagagat
ggataaaaagacaactggaaa
gaattcatggtggtcaacatccaagttccttcataagagacagagaagag
aaggctgaaagctcaggaaaagttacaaaaacaggaggatctgttggaga
aaaatttttttagtgaattttaaccagaggtagccacacgtgagctatgg
accaggctggtctatgagtagtaaattcctgagccttggtgacataaaag
aaaaaaacaggaataaggtatttagaaaaatttttaaagtgtaacttgat
attgttttggcatcacaaggtcacaaggtcacaagatcagtgacatatag
gctagggtatttatgatctgtggagatgaaggagaaaaatagaccttcag
tttggattgttcaagagtcactgttttagaaaatatcaataaaaagggac
aggggttgatgataaaatagatcttgaaaatcatgactatcttcttagtt
atacaatttgcctaagactcagagtttgggagatggtgataagattgcct
tttcacacaaaagggatatttaagtatttctaggaaatgacatacagggg
gacagagtgagtttgagtcacattgaaagtgaattactgacacactaagg
atgatctgggacatctgcagtgggaactgcgtgttgagtgctaagcactt
ggcatatcttacagctaggagctgatgcaactctgtaaagcactggcctg
cttttcaaatgagtgacttaaggcttagtgagggcgagtaacctgtctaa
agttgcaaaaacactgagtggcagagagtggtttgaactttgggtcttat
aagccaatgtggtctctgagacagcctctgaggcttatctaatgattatt
caccagagggtgggatggtctctgctagaattaaaaagtgtgtcttgggg
agatggttcagctgcacgaggacctaagtttgatccctagaatccatgtc
attttgtttagtttttaaaagctaggcatggtagcccatgttgtaagacg
ctcccgtgtgtgtggtggtgtgtgagtgggtgttgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_165983735_165984439
seq2: B6Ng01-075J05.b_46_572

seq1  GAATTCACCTACAAGTCCTCATGTGCCTTTCAATGCAATGAGGGCTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTACAAGTCCTCATGTGCCTTTCAATGCAATGAGGGCTTTAG  50

seq1  CTTGCATGGCTCAGCTCAACTTGAGTGCACATCTCAGGGAAAGTGGACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATGGCTCAGCTCAACTTGAGTGCACATCTCAGGGAAAGTGGACCC  100

seq1  AGGAAGTCCCCTCCTGCCAAGGTAACACTGAGTTCAGACTCTCATGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCCCCTCCTGCCAAGGTAACACTGAGTTCAGACTCTCATGACAC  150

seq1  ACATCAACTCCGTGGTTTTGTGGTATGGGTTTCTTGACTTCCGCTATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACTCCGTGGTTTTGTGGTATGGGTTTCTTGACTTCCGCTATGGG  200

seq1  CATGTCCTTTGCAGTGGTACAATGTCCAAGCCTTGACGTCCCGGGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTTTGCAGTGGTACAATGTCCAAGCCTTGACGTCCCGGGAAAGA  250

seq1  TGAACATGAGCTGCAGCGGAACAGCAGTTTTCGGCACAGTGTGTGAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATGAGCTGCAGCGGAACAGCAGTTTTCGGCACAGTGTGTGAGTTT  300

seq1  ACATGTCCTGATGATTGGACACTCAATGGATCTGCAGTTCTGACGTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCCTGATGATTGGACACTCAATGGATCTGCAGTTCTGACGTGTGG  350

seq1  TGCCACGGGACGCTGGTCTGGGATGCCGCCTACCTGTGAAGGTAAGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACGGGACGCTGGTCTGGGATGCCGCCTACCTGTGAAGGTAAGGCAC  400

seq1  TGATGGATGGTGGTTGCCTTGGGGAGTAGAGGGAAGAGGGGTGTTATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGATGGTGGTTGCCTTGGGGAGTAGAGGGAAGAGGGGTGTTATGTT  450

seq1  GCTAAGGAAGCTAACTGTCCATTATGTCCAAATCA-GAATGGTAGGTCAT  499
      |||||||||||||||||||||||||||||||||||    |  |   |  |
seq2  GCTAAGGAAGCTAACTGTCCATTATGTCCAAATCATTTTTTTTTTTTTTT  500

seq1  AGAGATGGATAAAAAGACAACAGGAAATGATGTCTGTGGACCAGGTAGAA  549
      ||||||||||||||||||||| |||||                       
seq2  AGAGATGGATAAAAAGACAACTGGAAA-----------------------  527

seq1  TGTTCTGTTCTTCTCTGACACCCCCCTTTCTTCTCCAACGCTCACCACTG  599
                                                        
seq2  --------------------------------------------------  527

seq1  ACCCCCGCTGTTATGATTTATTCCTTGGTCCTTCTCTGTTCTCCCTTTCT  649
                                                        
seq2  --------------------------------------------------  527

seq1  CTCCCGTTATACCTCCCGTTTCTGCTCCCTCGAAGTGGGATTCTGATCAT  699
                                                        
seq2  --------------------------------------------------  527

seq1  TGGAAA  705
            
seq2  ------  527

seq1: chr1_166121053_166122085
seq2: B6Ng01-075J05.g_67_1107 (reverse)

seq1  ---------CACACACACACACAC--ACACACACACGGGAGCTGTCTTTA  39
               ||| ||| |||||||   ||||||||||||||| ||| |||
seq2  CACACACAACACCCACTCACACACCACCACACACACGGGAGC-GTC-TTA  48

seq1  CAAACATGGGCTACCATGCCTAGCTTTTAAAAACAAAACAAAATGACATG  89
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  C-AACATGGGCTACCATGCCTAGCTTTTAAAAACTAAACAAAATGACATG  97

seq1  GATTCTAGGGATCAAACTTAGGTCCTTGTGGCAGCTGAACCATCTCCCC-  138
      |||||||||||||||||||||||||| || ||||||||||||||||||| 
seq2  GATTCTAGGGATCAAACTTAGGTCCTCGT-GCAGCTGAACCATCTCCCCA  146

seq1  AGACCCACTTTTTAATTCTTAGCAGAGACCATCCCACCCTCTGGTGAATA  188
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGACACACTTTTTAATTC-TAGCAGAGACCATCCCACCCTCTGGTGAATA  195

seq1  ATCATTAGATAAGCCTCAGAGGCTGTCTCAGAGACCACATTGGCTTATAA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAGATAAGCCTCAGAGGCTGTCTCAGAGACCACATTGGCTTATAA  245

seq1  GACCC-AAGTTCAAACCACTCTCTGCCACTCAGTGTTTTTGCAACTTTAG  287
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAAGTTCAAACCACTCTCTGCCACTCAGTGTTTTTGCAACTTTAG  295

seq1  ACAGGTTACTCGCCCTCACTAAGCCTTAAGTCACTCATTTGAAAAGCAGG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTACTCGCCCTCACTAAGCCTTAAGTCACTCATTTGAAAAGCAGG  345

seq1  CCAGTGCTTTACAGAGTTGCATCAGCTCCTAGCTGTAAGATATGCCAAGT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTTTACAGAGTTGCATCAGCTCCTAGCTGTAAGATATGCCAAGT  395

seq1  GCTTAGCACTCAACACGCAGTTCCCACTGCAGATGTCCCAGATCATCCTT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCACTCAACACGCAGTTCCCACTGCAGATGTCCCAGATCATCCTT  445

seq1  AGTGTGTCAGTAATTCACTTTCAATGTGACTCAAACTCACTCTGTCCCCC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCAGTAATTCACTTTCAATGTGACTCAAACTCACTCTGTCCCCC  495

seq1  TGTATGTCATTTCCTAGAAATACTTAAATATCCCTTTTGTGTGAAAAGGC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTCATTTCCTAGAAATACTTAAATATCCCTTTTGTGTGAAAAGGC  545

seq1  AATCTTATCACCATCTCCCAAACTCTGAGTCTTAGGCAAATTGTATAACT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATCACCATCTCCCAAACTCTGAGTCTTAGGCAAATTGTATAACT  595

seq1  AAGAAGATAGTCATGATTTTCAAGATCTATTTTATCATCAACCCCTGTCC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGATAGTCATGATTTTCAAGATCTATTTTATCATCAACCCCTGTCC  645

seq1  CTTTTTATTGATATTTTCTAAAACAGTGACTCTTGAACAATCCAAACTGA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATTGATATTTTCTAAAACAGTGACTCTTGAACAATCCAAACTGA  695

seq1  AGGTCTATTTTTCTCCTTCATCTCCACAGATCATAAATACCCTAGCCTAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTATTTTTCTCCTTCATCTCCACAGATCATAAATACCCTAGCCTAT  745

seq1  ATGTCACTGATCTTGTGACCTTGTGACCTTGTGATGCCAAAACAATATCA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACTGATCTTGTGACCTTGTGACCTTGTGATGCCAAAACAATATCA  795

seq1  AGTTACACTTTAAAAATTTTTCTAAATACCTTATTCCTGTTTTTTTCTTT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACACTTTAAAAATTTTTCTAAATACCTTATTCCTGTTTTTTTCTTT  845

seq1  TATGTCACCAAGGCTCAGGAATTTACTACTCATAGACCAGCCTGGTCCAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCACCAAGGCTCAGGAATTTACTACTCATAGACCAGCCTGGTCCAT  895

seq1  AGCTCACGTGTGGCTACCTCTGGTTAAAATTCACTAAAAAAATTTTTCTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACGTGTGGCTACCTCTGGTTAAAATTCACTAAAAAAATTTTTCTC  945

seq1  CAACAGATCCTCCTGTTTTTGTAACTTTTCCTGAGCTTTCAGCCTTCTCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATCCTCCTGTTTTTGTAACTTTTCCTGAGCTTTCAGCCTTCTCT  995

seq1  TCTCTGTCTCTTATGAAGGAACTTGGATGTTGACCACCATGAATTC  1033
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTTATGAAGGAACTTGGATGTTGACCACCATGAATTC  1041