BAC Information

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BAC

Clone NameB6Ng01-075K22
Chromosome1 (Build37)14 (Build37)
Map Location 149,383,545 - 149,384,679106,710,521 - 106,710,831
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneB830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075K22.bB6Ng01-075K22.g
ACCDH892173DH892174
length1,1181,123
definitionDH892173|Mus musculus domesticus DNA, BAC clone: B6Ng01-075K22, 5' end.DH892174|Mus musculus domesticus DNA, BAC clone: B6Ng01-075K22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(149,383,545 - 149,384,679)(106,710,521 - 106,710,831)
sequence
gaattccctctgcattttaatttacttatctgtgatctattgtttaacat
actatttttatatgtgctaaaactgtaaggataaaacacaacatgaaaaa
atgcacagcgccaactgtcatttcatattctttaaacctacaaaattgct
tcattatatatatctgcctgtagattataaaggagggcatagaaaaaatt
taaaagcaaacaactatgaggattctatttcgttcaaacacttaaggtga
attcacttacttatattatgcatgccaccttaagagagtaactaaatagt
attgctttagatagatttgtttcagacgttacagcaatgacatgtagtgt
aattaaaatatcaggcagaatttgaaaatactttgtgtaatccaagcgat
aatatttatcaaggtgttttaactttcttgtaacatgtgaataattaata
atgtaattacaggcaagttctttcttatatataatcaaaatgactgggaa
ataaacagtggaaataataaataaataaacaataataataataaataaac
agtggaaaaataagaaatcatgttgccatatagctatagtttatgtttaa
gattccttatcaaagttctgtccattgtctgaatgaataaacttttcaaa
atttagtgagagtgttatgacatctctaacagttcctaagcaagatgtga
tgaactatgaatgagctaaaacattttgcagaaatatatccaggcacaaa
ggtgactaaggtatatctgaaaagaaagtttagaaagaaagtgcacatta
aaacatattatcgtagagtatgaatgaattaatcaaaggcatttttattc
aaatgaccactaaagtgactgttaagtgatctacacacttttaaaattat
tcttagtaatttctataattcatttagtactgatttgattttgtgctctt
ctctctctctctgcatgtatatatgtttgtatttacatgatttctttctt
tatttagactaatgagtttatcttttggtaatctccctaatttcataaaa
tcaaatatatttataaatatatttagtgcataggtactaacgttgcatat
ccttatattataagtttt
gaattctcacctgaggaataccgattggcagagaagcacctgaaaaaatg
ttcaacatccttaatcaccagggaaatgcaaatcaaaacaaccatgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcagacttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactacccaggatccagcaatacctctcctgggca
tatatccagaagatgccccaactggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatctacacaacgg
agtactactcagctattaaaaagaatgaatttatgaaattcctagccaaa
tggatggacctggagggcatcatcctgagtgaggtaacacattcacaaag
gaactcaatcaatatgtactcactgataggtggatattagccccaaacct
aggatacccaagatataagatagaatttgctaaacaaatgaaactcaaga
agaatgaagactgaagtgtggacactatgcccctccttagaattgggaac
aaaacacccatggaaggagttacagagacaaagtttggagctgagatgaa
aggatggaccatgaagagactgccatatccagggatccaccccataatca
gcatccaaacgctgacaccattgcatacactagcaagattttattgaaag
gacccagatgtagctgtctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctcccaa
tggaggagctagagaaagtagccaagagctaaagggatctgcaaccctat
aggtggaacaacatatgaactaaccagtaccccggagctcttgactctcc
gctgcatatgtatcaaaaaaatggcctagtcgccatcactgaaaagaggc
cattgacttgccaaactttatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_149383545_149384679
seq2: B6Ng01-075K22.b_44_1161

seq1  GAATTCCCTCTGCATTTTAATTTACTTATCTGTGATCTATTGTTTAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTGCATTTTAATTTACTTATCTGTGATCTATTGTTTAACAT  50

seq1  ACTATTTTTATATGTGCTAAAACTGTAAGGATAAAACACAACATGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTTATATGTGCTAAAACTGTAAGGATAAAACACAACATGAAAAA  100

seq1  ATGCACAGCGCCAACTGTCATTTCATATTCTTTAAACCTACAAAATTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAGCGCCAACTGTCATTTCATATTCTTTAAACCTACAAAATTGCT  150

seq1  TCATTATATATATCTGCCTGTAGATTATAAAGGAGGGCATAGAAAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATATATATCTGCCTGTAGATTATAAAGGAGGGCATAGAAAAAATT  200

seq1  TAAAAGCAAACAACTATGAGGATTCTATTTCGTTCAAACACTTAAGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCAAACAACTATGAGGATTCTATTTCGTTCAAACACTTAAGGTGA  250

seq1  ATTCACTTACTTATATTATGCATGCCACCTTAAGAGAGTAACTAAATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTTACTTATATTATGCATGCCACCTTAAGAGAGTAACTAAATAGT  300

seq1  ATTGCTTTAGATAGATTTGTTTCAGACGTTACAGCAATGACATGTAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTAGATAGATTTGTTTCAGACGTTACAGCAATGACATGTAGTGT  350

seq1  AATTAAAATATCAGGCAGAATTTGAAAATACTTTGTGTAATCCAAGCGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATATCAGGCAGAATTTGAAAATACTTTGTGTAATCCAAGCGAT  400

seq1  AATATTTATCAAGGTGTTTTAACTTTCTTGTAACATGTGAATAATTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATCAAGGTGTTTTAACTTTCTTGTAACATGTGAATAATTAATA  450

seq1  ATGTAATTACAGGCAAGTTCTTTCTTATATATAATCAAAATGACTGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTACAGGCAAGTTCTTTCTTATATATAATCAAAATGACTGGGAA  500

seq1  ATAAACAGTGGAAATAATAAATAAATAAACAATAATAATAATAAATAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGTGGAAATAATAAATAAATAAACAATAATAATAATAAATAAAC  550

seq1  AGTGGAAAAATAAGAAATCATGTTGCCATATAGCTATAGTTTATGTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAAAATAAGAAATCATGTTGCCATATAGCTATAGTTTATGTTTAA  600

seq1  GATTCCTTATCAAAGTTCTGTCCATTGTCTGAATGAATAAACTTTTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTTATCAAAGTTCTGTCCATTGTCTGAATGAATAAACTTTTCAAA  650

seq1  ATTTAGTGAGAGTGTTATGACATCTCTAACAGTTCCTAAGCAAGATGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTGAGAGTGTTATGACATCTCTAACAGTTCCTAAGCAAGATGTGA  700

seq1  TGAACTATGAATGAGCTAAAACATTTTGCAGAAATATATCCAGGCACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTATGAATGAGCTAAAACATTTTGCAGAAATATATCCAGGCACAAA  750

seq1  GGTGACTAAGGTATATCTGAAAAGAAAGTTTAGAAAGAAAGTGCACATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTAAGGTATATCTGAAAAGAAAGTTTAGAAAGAAAGTGCACATTA  800

seq1  AAACATATTATCGTAGAGTATGAATGAATTAATCAAAGGCATTTTTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATTATCGTAGAGTATGAATGAATTAATCAAAGGCATTTTTATTC  850

seq1  AAATGACCACTAAAGTGACTGTTAAGTGATCTACACACTTTTAAAATTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCACTAAAGTGACTGTTAAGTGATCTACACACTTTTAAAATTAT  900

seq1  TCTTAGTAATTTCTATAATTCATTTAGTACTGATTTGATTTTTGTGCTCT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTTAGTAATTTCTATAATTCATTTAGTACTGATTTGA-TTTTGTGCTCT  949

seq1  TCTCTCTCTCTCTGCATGTATATATGTTTGTTATTTTACCATGATTTCTT  1000
      |||||||||||||||||||||||||||||| |||||   |||||||||||
seq2  TCTCTCTCTCTCTGCATGTATATATGTTTG-TATTT--ACATGATTTCTT  996

seq1  TCTTTATTTAAGACTAATGAGTTTATTCTTTTTGGTAAATCTCCCTAAAT  1050
      ||||||||| ||||||||||||||||   ||||||| ||||||||| |||
seq2  TCTTTATTT-AGACTAATGAGTTTAT--CTTTTGGT-AATCTCCCT-AAT  1041

seq1  TTCATAAAATCAAAATATATTTAATTAAATATATTTAGTTGCATTAAGTA  1100
      ||||||||||| |||||||||||  ||||||||||||| |||| || |||
seq2  TTCATAAAATC-AAATATATTTA--TAAATATATTTAG-TGCA-TAGGTA  1086

seq1  CTAAACGTTTGCATTATCTTTATATTATAAGTTTT  1135
      || |||| ||||| |||| ||||||||||||||||
seq2  CT-AACG-TTGCA-TATCCTTATATTATAAGTTTT  1118

seq1: chr14_106710521_106710831
seq2: B6Ng01-075K22.g_884_1190 (reverse)

seq1  ATATACAGTTT-GCAAGTCCAATGGGCCTCTCTTCCCAGTGATGGCCGAC  49
      ||||| ||||| |||||| |||| ||||||| ||  ||||||||| ||||
seq2  ATATAAAGTTTGGCAAGT-CAAT-GGCCTCTTTT--CAGTGATGG-CGAC  45

seq1  TAGGCCA-TCTTTTGATACATATGCAGC-TAGAGTCAAGAGCTCCGGGGT  97
      ||||||| | ||||||||||||||||||  ||||||||||||||||||||
seq2  TAGGCCATTTTTTTGATACATATGCAGCGGAGAGTCAAGAGCTCCGGGGT  95

seq1  ACTGGTTAGTTCAAAATGTTGTTCCACCTATATGGTTGCAGATCCCTTTA  147
      |||||||||||| | ||||||||||||||||| |||||||||||||||||
seq2  ACTGGTTAGTTC-ATATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTA  144

seq1  GCTCCTTGGGTACTTCCTCTAGCTCCTCAATTGGGAGCCCTGTGATCCAT  197
      ||| ||||| ||||| |||||||||||| |||||||||||||||||||||
seq2  GCT-CTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCAT  193

seq1  CCAATAGCTGACTATGAGCATCCACTTCTGTGTTTGCTAGGCCCCAGCAT  247
      ||| ||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  CCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCAT  243

seq1  AGTCTCACAAGAGACAGCTACATCTGGGTCCTTTAGATAAAATCTTGCTA  297
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  AGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAATAAAATCTTGCTA  293

seq1  GTGTATGCAATGGT  311
      ||||||||||||||
seq2  GTGTATGCAATGGT  307