BAC Information

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BAC

Clone NameB6Ng01-075M15
Chromosome1 (Build37)
Map Location 61,851,437 - 62,001,056
singlet/doubletdoublet
Overlap genePard3b
Upstream geneLOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075M15.bB6Ng01-075M15.g
ACCDH892247DH892248
length1,22480
definitionDH892247|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M15, 5' end.DH892248|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,999,825 - 62,001,056)(61,851,437 - 61,851,516)
sequence
gaattccatacatagaactgtcttcagctggcaaaatcacactcctgcca
gagcatgagacaaatcatagggtgtggacaatctgaagcagtcccatatc
ctgtacccgggattaaaacaaaaatgtagtcacataacatttctgtgttt
ttaaaggaaccaacattctcactaacagatgacctgtaatggacctcatt
atgtcttccacagatactcttagttattaaaaagcttaaatactttcaat
ttttaaaagtgtcattttggttccttcattttagcctataaataccatgt
ggtttccaaggtaccaccctagtgcccccaattcaaatgacttagttaac
ctaattacagatgcaatgtaaaatgtttgccatcaataaatactggagaa
aacacaattgggaaacaacttccgtagtaagattcctccataggacagca
catgctgaatttgttcttttaaccatactagtcaggcagcaaatacaact
gccaaactgtggttattaagtagaacaatggtttccaaactaccaacatt
cagcaagggcaccaaaattatagcctggatgccacactaagcaaaaggaa
cgattacaacaacaatcaaaataccatgtgctttctggttaacaaggtca
gcttcccatatcaacaattggcatgggagaagtttttttttccattttcc
atgaatttattcacatacacacacacactcacacatgcacacacacacag
acacacacacacactcacatgcacatgcacacatgcatagacacacaaga
agaagagaggctagaatgttctattattttcattttgaacgtgaagatag
ggctagtaacactaccttaaggcatggaaagactgaatgagtggagtcaa
tgggtcagcaactccagaaccatgtactgagaagacaggaacaggctcct
tttcccctttttgttctaatgagttctgtagatactgaagcaatgcatta
tttcaaagcacatgataagtttagtcacaaagtacttagtcaggttcccc
agtccaggtggaggaatgaacggtactattctgtactactgtggtgagca
agccttcacagcagtagcgctggtgagactacccaccttctttccgctag
ctgacttcttctagaaatgaactctagcttggctccctcggaaccttgac
tatctagggctcaaataatgcccc
ctttaggaaataagaaggacgagggggcagtcttacagacatactaaggc
tattacttgggatgtatgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61999825_62001056
seq2: B6Ng01-075M15.b_47_1270 (reverse)

seq1  GGGGCA-TATGTGAGCCTAAGATAGTCCAGAGGTTCCGAGGGGGAGGCAA  49
      |||||| ||| ||||||  ||||||||   |||||||||  ||||| || 
seq2  GGGGCATTATTTGAGCCCTAGATAGTC--AAGGTTCCGA--GGGAGCCA-  45

seq1  GAGCTAGGAGTCA-TTCTAGAAGAAAGTCAGACTAGCGG-AAGAAGGTGG  97
       ||||||   ||| ||||||||| ||||||| ||||||| |||||||| |
seq2  -AGCTAGAGTTCATTTCTAGAAG-AAGTCAG-CTAGCGGAAAGAAGGT-G  91

seq1  GGTAGTCTCA-CAGCGCTAACTGCCTGGTGAAGGCTTGCTCACCACAGTA  146
      |||||||||| ||||||| |||||   |||||||||||||||||||||||
seq2  GGTAGTCTCACCAGCGCT-ACTGC--TGTGAAGGCTTGCTCACCACAGTA  138

seq1  GTACAGGAATAGTACGGTTCATTCCT-CACCTGGACTGGGG-ACCTGGCT  194
      ||||| ||||||||| |||||||||| |||||||||||||| ||||| ||
seq2  GTACA-GAATAGTACCGTTCATTCCTCCACCTGGACTGGGGAACCTGACT  187

seq1  AAGTACTTTGTGACTAAACTTATCATGTGCTTTTGAAATAATGCATTGCT  244
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGTACTTTGTGACTAAACTTATCATGTGC-TTTGAAATAATGCATTGCT  236

seq1  TCAGTATCTACAGAACTCATTAGAACAAAAAGGGGAAAAGGAGCCTGTTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATCTACAGAACTCATTAGAACAAAAAGGGGAAAAGGAGCCTGTTC  286

seq1  CTGTCTTCTCAGTACATGGTTCTGGAGTTGCTGACCCATTGACTCCACTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCTCAGTACATGGTTCTGGAGTTGCTGACCCATTGACTCCACTC  336

seq1  ATTCAGTCTTTCCATGCCTTAAGGTAGTGTTACTAGCCCTATCTTCACGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTCTTTCCATGCCTTAAGGTAGTGTTACTAGCCCTATCTTCACGT  386

seq1  TCAAAATGAAAATAATAGAACATTCTAGCCTCTCTTCTTCTTGTGTGTCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGAAAATAATAGAACATTCTAGCCTCTCTTCTTCTTGTGTGTCT  436

seq1  ATGCATGTGTGCATGTGCATGTGAGTGTGTGTGTGTGTCTGTGTGTGTGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTGTGCATGTGCATGTGAGTGTGTGTGTGTGTCTGTGTGTGTGT  486

seq1  GCATGTGTGAGTGTGTGTGTGTATGTGAATAAATTCATGGAAAATGGAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTGAGTGTGTGTGTGTATGTGAATAAATTCATGGAAAATGGAAA  536

seq1  AAAAAACTTCTCCCATGCCAATTGTTGATATGGGAAGCTGACCTTGTTAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTCTCCCATGCCAATTGTTGATATGGGAAGCTGACCTTGTTAA  586

seq1  CCAGAAAGCACATGGTATTTTGATTGTTGTTGTAATCGTTCCTTTTGCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGCACATGGTATTTTGATTGTTGTTGTAATCGTTCCTTTTGCTT  636

seq1  AGTGTGGCATCCAGGCTATAATTTTGGTGCCCTTGCTGAATGTTGGTAGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGCATCCAGGCTATAATTTTGGTGCCCTTGCTGAATGTTGGTAGT  686

seq1  TTGGAAACCATTGTTCTACTTAATAACCACAGTTTGGCAGTTGTATTTGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACCATTGTTCTACTTAATAACCACAGTTTGGCAGTTGTATTTGC  736

seq1  TGCCTGACTAGTATGGTTAAAAGAACAAATTCAGCATGTGCTGTCCTATG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGACTAGTATGGTTAAAAGAACAAATTCAGCATGTGCTGTCCTATG  786

seq1  GAGGAATCTTACTACGGAAGTTGTTTCCCAATTGTGTTTTCTCCAGTATT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATCTTACTACGGAAGTTGTTTCCCAATTGTGTTTTCTCCAGTATT  836

seq1  TATTGATGGCAAACATTTTACATTGCATCTGTAATTAGGTTAACTAAGTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATGGCAAACATTTTACATTGCATCTGTAATTAGGTTAACTAAGTC  886

seq1  ATTTGAATTGGGGGCACTAGGGTGGTACCTTGGAAACCACATGGTATTTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATTGGGGGCACTAGGGTGGTACCTTGGAAACCACATGGTATTTA  936

seq1  TAGGCTAAAATGAAGGAACCAAAATGACACTTTTAAAAATTGAAAGTATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTAAAATGAAGGAACCAAAATGACACTTTTAAAAATTGAAAGTATT  986

seq1  TAAGCTTTTTAATAACTAAGAGTATCTGTGGAAGACATAATGAGGTCCAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTTTAATAACTAAGAGTATCTGTGGAAGACATAATGAGGTCCAT  1036

seq1  TACAGGTCATCTGTTAGTGAGAATGTTGGTTCCTTTAAAAACACAGAAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTCATCTGTTAGTGAGAATGTTGGTTCCTTTAAAAACACAGAAAT  1086

seq1  GTTATGTGACTACATTTTTGTTTTAATCCCGGGTACAGGATATGGGACTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTGACTACATTTTTGTTTTAATCCCGGGTACAGGATATGGGACTG  1136

seq1  CTTCAGATTGTCCACACCCTATGATTTGTCTCATGCTCTGGCAGGAGTGT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGATTGTCCACACCCTATGATTTGTCTCATGCTCTGGCAGGAGTGT  1186

seq1  GATTTTGCCAGCTGAAGACAGTTCTATGTATGGAATTC  1232
      ||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGCCAGCTGAAGACAGTTCTATGTATGGAATTC  1224

seq1: chr1_61851437_61851516
seq2: B6Ng01-075M15.g_72_151

seq1  CTTTAGGAAATAAGAAGGACGAGGGGGCAGTCTTACAGACATACTAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGAAATAAGAAGGACGAGGGGGCAGTCTTACAGACATACTAAGGC  50

seq1  TATTACTTGGGATGTATGTGTGTGTGTGTG  80
      ||||||||||||||||||||||||||||||
seq2  TATTACTTGGGATGTATGTGTGTGTGTGTG  80