BAC Information

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BAC

Clone NameB6Ng01-075M16
Chromosome1 (Build37)
Map Location 121,559,451 - 121,668,657
singlet/doubletdoublet
Overlap genePtpn4
Upstream geneTcfcp2l1, LOC100041753, Gli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5
Downstream geneLOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075M16.bB6Ng01-075M16.g
ACCDH892249DH892250
length7561,141
definitionDH892249|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M16, 5' end.DH892250|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,667,905 - 121,668,657)(121,559,451 - 121,560,598)
sequence
gaattcaattccaagcatccacatggtggctcaaaaccatctggaatggg
atctgacgccctcttttggtgtgtctgaagacagctacagtgtactcatt
aaatgaaataaataaatttttaaagaattttatttatttattttttgtac
atgagtacactattgttctcttcagacacaccagaagagggcattggatc
ccattacagatgtgtggttgctgggaattgaactcaggacctctggaaga
gtattcggtgctcttaactgctgagccatctcctcacccaccacattcta
agtctttgcttgtcatttctacttaagaaagtactcaagaatgacccata
tgatcatttcagctgtttccttgagaattaggtaaatgtttagggtataa
gttagaaaaataatgacagtcattacagtaagctgtataagtgcagatta
ctatatttggtgaaatgcagaattagtaatttaaatgaaaagaattagaa
cactattccctttgtacacttcccagatataaggacataggtggtaattc
atcccagccaaaaaatctttgaccttcagtctgtcctgcctgcaggttgt
gctgggacaggggtagcacagaactttgtgggaatggccaacccatgagt
ggttcatttagcccccacaccacaagtgggagtccaagcctgacaatgcc
tgggatggcttctcagcattacttttagtgatgcataaaaggggagtacc
agaaga
gaattcctatccaaactgctctagcctacagatccatctgccactttgag
gaaaatacagagaacactatcttgggaatataaaccaaaccaactgagac
tctagcaaatgacatagtacaagtactatttattaaatcaattgaaaaaa
caaaataaaacaccccccaaaggaacaagaggtgtagaaagtagtttttt
aattataaaaatttagaatttagatataaactaattcaagtgtgcaggcc
attattggaacatcaatttcaaataaagtataaaaacaaccattataatt
gttaatggctcagcaatttccatggagtacagatctgaaagaaatcaaac
tgcagtctcaaagagatattctatacatccttcatcatggtagtattatt
cagaatagtcaaaagctagaaacagcaacatgtccactgatggaagaatt
attacacaaaatctactatagaaaagaatggaatatggtttagccttgaa
gagaagccagattctgacatggttaccaaatggagaactgtgagaatatt
aacttaaggcagtcagaaatacataagtactgtatgactctacttatatg
ataaatcaaactccaagtactgtatgactctacttatatgataaatcaaa
ctccggaacaaacagtagactagaggtaactagaaacttagtagaatgga
aatgaagaactttttaaatggtataaaaaagaggtcataaagttacttct
ccaacaaccttcatatactcaatactactgaaatgcacacataaaatggt
taaaatggaaatttttgttatgtgtattttatcacaataaaaagggggaa
aaaaccccaaataaccttgacccaacttgaaccatacacagtacccaagc
cagatcaaaccgatgctctcagccagagtccatcttgccagcacctccca
gtctgatgcctggtctctgagacctcacacaatgtctccagtcttctgca
tgccagccctaccccaactgtatccacctggctttacctcacttttacca
tagcattctcaagcaaagtcttctgtatccacattcagaatagaagagta
aagaatcacatgcctcaggccttatcataaaaatgaaccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_121667905_121668657
seq2: B6Ng01-075M16.b_46_801 (reverse)

seq1  TCTTCTGGTACTCCATTCTATTGCATCACT-AAAGTAATGCTGAGAAGCC  49
      ||||||||||||||  | |  ||||||||| |||||||||||||||||||
seq2  TCTTCTGGTACTCCCCTTTTATGCATCACTAAAAGTAATGCTGAGAAGCC  50

seq1  AT-CCAGGCATTGTCAGGCTTGGACTCCCACTTGTGGTGT-GGGGCTAAA  97
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCCCAGGCATTGTCAGGCTTGGACTCCCACTTGTGGTGTGGGGGCTAAA  100

seq1  CTGAACCACTCATGGGTTGGCCATTCCCAC-AAGTTCTGTGCTACCCCTG  146
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  -TGAACCACTCATGGGTTGGCCATTCCCACAAAGTTCTGTGCTACCCCTG  149

seq1  TCCCAGCACAACCTGCAGGCAGGACAGACTGAAGGTCAAAGATTTTTTGG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACAACCTGCAGGCAGGACAGACTGAAGGTCAAAGATTTTTTGG  199

seq1  CTGGGATGAATTACCACCTATGTCCTTATATCTGGGAAGTGTACAAAGGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGAATTACCACCTATGTCCTTATATCTGGGAAGTGTACAAAGGG  249

seq1  AATAGTGTTCTAATTCTTTTCATTTAAATTACTAATTCTGCATTTCACCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTTCTAATTCTTTTCATTTAAATTACTAATTCTGCATTTCACCA  299

seq1  AATATAGTAATCTGCACTTATACAGCTTACTGTAATGACTGTCATTATTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGTAATCTGCACTTATACAGCTTACTGTAATGACTGTCATTATTT  349

seq1  TTCTAACTTATACCCTAAACATTTACCTAATTCTCAAGGAAACAGCTGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTTATACCCTAAACATTTACCTAATTCTCAAGGAAACAGCTGAA  399

seq1  ATGATCATATGGGTCATTCTTGAGTACTTTCTTAAGTAGAAATGACAAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCATATGGGTCATTCTTGAGTACTTTCTTAAGTAGAAATGACAAGC  449

seq1  AAAGACTTAGAATGTGGTGGGTGAGGAGATGGCTCAGCAGTTAAGAGCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTAGAATGTGGTGGGTGAGGAGATGGCTCAGCAGTTAAGAGCAC  499

seq1  CGAATACTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACACATCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATACTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACACATCT  549

seq1  GTAATGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGAGAACAATAGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGAGAACAATAGTG  599

seq1  TACTCATGTACAAAAAATAAATAAATAAAATTCTTTAAAAATTTATTTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGTACAAAAAATAAATAAATAAAATTCTTTAAAAATTTATTTAT  649

seq1  TTCATTTAATGAGTACACTGTAGCTGTCTTCAGACACACCAAAAGAGGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAATGAGTACACTGTAGCTGTCTTCAGACACACCAAAAGAGGGC  699

seq1  GTCAGATCCCATTCCAGATGGTTTTGAGCCACCATGTGGATGCTTGGAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATCCCATTCCAGATGGTTTTGAGCCACCATGTGGATGCTTGGAAT  749

seq1  TGAATTC  753
      |||||||
seq2  TGAATTC  756

seq1: chr1_121559451_121560598
seq2: B6Ng01-075M16.g_69_1209

seq1  GAATTCCTATCCAAACTGCTCTAGCCTACAGATCCATCTGCCACTTTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCCAAACTGCTCTAGCCTACAGATCCATCTGCCACTTTGAG  50

seq1  GAAAATACAGAGAACACTATCTTGGGAATATAAACCAAACCAACTGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACAGAGAACACTATCTTGGGAATATAAACCAAACCAACTGAGAC  100

seq1  TCTAGCAAATGACATAGTACAAGTACTATTTATTAAATCAATTGAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAAATGACATAGTACAAGTACTATTTATTAAATCAATTGAAAAAA  150

seq1  CAAAATAAAACACCCCCCAAAGGAACAAGAGGTGTAGAAAGTAGTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAAACACCCCCCAAAGGAACAAGAGGTGTAGAAAGTAGTTTTTT  200

seq1  AATTATAAAAATTTAGAATTTAGATATAAACTAATTCAAGTGTGCAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAAAATTTAGAATTTAGATATAAACTAATTCAAGTGTGCAGGCC  250

seq1  ATTATTGGAACATCAATTTCAAATAAAGTATAAAAACAACCATTATAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGGAACATCAATTTCAAATAAAGTATAAAAACAACCATTATAATT  300

seq1  GTTAATGGCTCAGCAATTTCCATGGAGTACAGATCTGAAAGAAATCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGGCTCAGCAATTTCCATGGAGTACAGATCTGAAAGAAATCAAAC  350

seq1  TGCAGTCTCAAAGAGATATTCTATACATCCTTCATCATGGTAGTATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCTCAAAGAGATATTCTATACATCCTTCATCATGGTAGTATTATT  400

seq1  CAGAATAGTCAAAAGCTAGAAACAGCAACATGTCCACTGATGGAAGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAGTCAAAAGCTAGAAACAGCAACATGTCCACTGATGGAAGAATT  450

seq1  ATTACACAAAATCTACTATAGAAAAGAATGGAATATGGTTTAGCCTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACAAAATCTACTATAGAAAAGAATGGAATATGGTTTAGCCTTGAA  500

seq1  GAGAAGCCAGATTCTGACATGGTTACCAAATGGAGAACTGTGAGAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCAGATTCTGACATGGTTACCAAATGGAGAACTGTGAGAATATT  550

seq1  AACTTAAGGCAGTCAGAAATACATAAGTACTGTATGACTCTACTTATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAGGCAGTCAGAAATACATAAGTACTGTATGACTCTACTTATATG  600

seq1  ATAAATCAAACTCCAAGTACTGTATGACTCTACTTATATGATAAATCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCAAACTCCAAGTACTGTATGACTCTACTTATATGATAAATCAAA  650

seq1  CTCCGGAACAAACAGTAGACTAGAGGTAACTAGAAACTTAGTAGAATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGAACAAACAGTAGACTAGAGGTAACTAGAAACTTAGTAGAATGGA  700

seq1  AATGAAGAACTTTTTAAATGGTATAAAAAAGAGGTCATAAAGTTACTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAACTTTTTAAATGGTATAAAAAAGAGGTCATAAAGTTACTTCT  750

seq1  CCAACAACCTTCATATACTCAATACTACTGAAATGCACACATAAAATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAACCTTCATATACTCAATACTACTGAAATGCACACATAAAATGGT  800

seq1  TAAAATGGAAATTTTTGTTATGTGTATTTTATCACAATAAAAAGGGGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGAAATTTTTGTTATGTGTATTTTATCACAATAAAAAGGGGGAA  850

seq1  AAAACCCCAAATAACCTTGACCCAACTTGAACCATACACAGTACCCAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCCAAATAACCTTGACCCAACTTGAACCATACACAGTACCCAAGC  900

seq1  CAGATCAAACCGATGCTCTCAGCCAGAGTCCATCTTGCCAGCACCTCCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAAACCGATGCTCTCAGCCAGAGTCCATCTTGCCAGCACCTCCCA  950

seq1  GTCTGATGCCTGGTCTTCTGAGACCTCACACAATGTCTCCAGTCTTCTGC  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTCTGATGCCTGGTC-TCTGAGACCTCACACAATGTCTCCAGTCTTCTGC  999

seq1  ATGCCAGCCCTACCCCCAACTGTATCCACCTGGCTTTACCTCACTTTTAC  1050
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGCCCTA-CCCCAACTGTATCCACCTGGCTTTACCTCACTTTTAC  1048

seq1  CATAGCCAATCTCAAGGCAAAGTCTCCTGTATCCACA-TCAGACATAGAA  1099
      ||||| || |||||| ||||||||| ||||||||||| ||||| |||| |
seq2  CATAG-CATTCTCAA-GCAAAGTCTTCTGTATCCACATTCAGA-ATAG-A  1094

seq1  AGAGTAAAGATTCCACATG-CTCAGGCCTTATCATAAAAAATGAAACCCA  1148
      |||||||||| | |||||| ||||||||||||||| ||||||| ||||||
seq2  AGAGTAAAGAAT-CACATGCCTCAGGCCTTATCAT-AAAAATG-AACCCA  1141