BAC Information

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BAC

Clone NameB6Ng01-075O06
Chromosome1 (Build37)
Map Location 11,545,585 - 11,660,532
singlet/doubletdoublet
Overlap geneA830018L16Rik
Upstream geneCpa6, LOC433271, C030045D06Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075O06.bB6Ng01-075O06.g
ACCDH892321DH892322
length1,1121,144
definitionDH892321|Mus musculus domesticus DNA, BAC clone: B6Ng01-075O06, 5' end.DH892322|Mus musculus domesticus DNA, BAC clone: B6Ng01-075O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,659,401 - 11,660,532)(11,545,585 - 11,546,733)
sequence
gaattctccatctgatttccacaactccattttaaaacaaacaaaatcat
gtttgtaaaacagctagtgagcaacagagccacaggagaagagctacaac
taaatctgtactcttcatgaaattctttaagctccataacaattcaactc
atgtttattattttaacatgccaaatattccgttttaagcagcaccagct
agattttaaactaaaggggaagggaaaagagaaaagtatcaagaggaagt
tgtagccatgatttattttaagaactctgttttaaacagtctctttcttt
ttagagttctgtatacctttgtcaagtagtacactgcacctgccaggcct
gtgcccttgatcccagttgtggttatacctgatgagttccagttgttccc
tttgtcatgctttagttttcctatgtggttagtacctaagagaaggggtg
tgaaagaaatagacacatgcgggtttaaatagttttaatatacccatggg
catgtgagtttgcatatatatgggaaggctttcctgagaaagatatccat
cttcattgttgggataaaacagttaaagcaattgccctcctgaggagagt
agacacccaacaatttgggatgctttctctcttatttgcattcagtgttt
aatcaggctctactcatctttttttttctttttttttataaactcagatt
gagggagggcacacacatacacacacaattggtgttatatttaaaccata
tttatatttaaagtatatgttaaagcatatactttaacacctttttgttt
ttgttttttgttttcaagacagggtttctctgtgtagccctggctgtctt
ggaactcattctgtagaccagggtggcctcgaactcagaaatccacctgc
ctctgcctctgcaagtgctggaattaaaggtgtgcaccaccactgcccag
ctatacttgaatacttttaccacagttgaaagcatatagatatgtagatg
agtattggtgtggttgctatcttggtgttactacaacaggattactaaaa
caagcagctagcttacttgtggagaatttttaataaaaaaaaattgagtt
agagaatcactt
gaattcaggagtttggagttaatgtagcattacactcaaactctgcttct
ggatgctgtgggacatctggacagagtcagccaccggccactgccctgag
tttccagcaaccaagtgtatatatcaggtggtaatttagggtggtgttga
agttgcaaataaagatatgggagtcattactgtacaaataaagaaactca
caagttatggaacacacgcatttgagattcatgtagtaaaatgatcaaat
gaataaagaaaatgaatctttagggagattgaatgaaaacaaaacaagaa
tgtgttcataaaaatcaaggaaacacaggaacttgtttaccacaggtgtg
tatccagtgctagataaagtctgtaagaggaagacagaatcacacatgtt
atatgggcagttgtctctgggctgtgctaacattgacccttggggtggta
ttctaacaagtggatagctggaaactacatcattttttctgtgtgctttt
atctaaatatgctataaggagaatcattcttctgcttttgaatagctatc
tgggagtaaatgaaagtttcttgttttctacttggtgttagttcaccttg
cagagtttccctgataaaataatttatgggagcagagtcatctgtggctc
acactttctgttgttgcttgactttctgcactcttgtagaacatcatcaa
ggttggaatatatgatagagaccatccttcacctcaaggttgatggaagc
acatcagaaaggaagggactgggagccatctacaacctttaaaagcgcac
ccctagtgaccttccttctaaagtcactttttgtgactccacctttctaa
agtttttgtcacttccccaaatatttgccaacagtttgggttaagcactc
agctcatgaggctttgggaggactgtaaatgtttggtctgattcttgccc
agtcccatgcttaacgagaataagactcagactcaaatatatttacaaat
acaattgaccatatagctagacctcttttctgacttttcaaactttaaat
agctcatttattgaccaatattcgcaaggtggctggaatatggaactaag
tactggactggcctagttttgtgtcgactgaaccagctggagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_11659401_11660532
seq2: B6Ng01-075O06.b_49_1160 (reverse)

seq1  AAGTGATTCCTCTAACTTCAATTTTTTTTTTTTATTTTAAAAAATTTCCT  50
      |||||||| ||||||| ||||||||||||| ||       |||| |||  
seq2  AAGTGATT-CTCTAAC-TCAATTTTTTTTTATT-------AAAAATTCTC  41

seq1  CACAGGTATACCTAGCTGCTTGGTTTTTAGTTAATTCCTGTTGTAGTTAA  100
      |||| ||| | |||||||||||  |||||||  | ||||||||||| |||
seq2  CACAAGTA-AGCTAGCTGCTTG--TTTTAGT--AATCCTGTTGTAG-TAA  85

seq1  CAACCAAGAATAGCAACCACACCAATACTCATCTACATATCTATATGGCT  150
      | |||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  C-ACCAAG-ATAGCAACCACACCAATACTCATCTACATATCTATAT-GCT  132

seq1  TTCAACTGTGGTTAAAAGTATTCAAGTATAGCTGGGCAGTGGTGGTGCAC  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTGTGG-TAAAAGTATTCAAGTATAGCTGGGCAGTGGTGGTGCAC  181

seq1  ACCTTTAATTCCAGCACTTGCAGAGGCAGAGGCAGGTGGATTTCTGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAATTCCAGCACTTGCAGAGGCAGAGGCAGGTGGATTTCTGAGTT  231

seq1  CGAGGCCACCCTGGTCTACAGAATGAGTTCCAAGACAGCCAGGGCTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCCACCCTGGTCTACAGAATGAGTTCCAAGACAGCCAGGGCTACAC  281

seq1  AGAGAAACCCTGTCTTGAAAAACAAAAAACAAAAACAAAAAGGTGTTAAA  350
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTTG-AAAACAAAAAACAAAAACAAAAAGGTGTTAAA  330

seq1  GTATATGCTTTAACATATACTTTAAATATAAATATGGTTTAAATATAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGCTTTAACATATACTTTAAATATAAATATGGTTTAAATATAACA  380

seq1  CCAATTGTGTGTGTATGTGTGTGCCCTCCCTCAATCTGAGTTTATAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGTGTGTGTATGTGTGTGCCCTCCCTCAATCTGAGTTTATAAAAA  430

seq1  AAAAGAAAAAAAAAGATGAGTAGAGCCTGATTAAACACTGAATGCAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAAAAAGATGAGTAGAGCCTGATTAAACACTGAATGCAAATA  480

seq1  AGAGAGAAAGCATCCCAAATTGTTGGGTGTCTACTCTCCTCAGGAGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAGCATCCCAAATTGTTGGGTGTCTACTCTCCTCAGGAGGGCA  530

seq1  ATTGCTTTAACTGTTTTATCCCAACAATGAAGATGGATATCTTTCTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTAACTGTTTTATCCCAACAATGAAGATGGATATCTTTCTCAGG  580

seq1  AAAGCCTTCCCATATATATGCAAACTCACATGCCCATGGGTATATTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTCCCATATATATGCAAACTCACATGCCCATGGGTATATTAAAA  630

seq1  CTATTTAAACCCGCATGTGTCTATTTCTTTCACACCCCTTCTCTTAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAAACCCGCATGTGTCTATTTCTTTCACACCCCTTCTCTTAGGTA  680

seq1  CTAACCACATAGGAAAACTAAAGCATGACAAAGGGAACAACTGGAACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCACATAGGAAAACTAAAGCATGACAAAGGGAACAACTGGAACTCA  730

seq1  TCAGGTATAACCACAACTGGGATCAAGGGCACAGGCCTGGCAGGTGCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTATAACCACAACTGGGATCAAGGGCACAGGCCTGGCAGGTGCAGT  780

seq1  GTACTACTTGACAAAGGTATACAGAACTCTAAAAAGAAAGAGACTGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTACTTGACAAAGGTATACAGAACTCTAAAAAGAAAGAGACTGTTTA  830

seq1  AAACAGAGTTCTTAAAATAAATCATGGCTACAACTTCCTCTTGATACTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGTTCTTAAAATAAATCATGGCTACAACTTCCTCTTGATACTTT  880

seq1  TCTCTTTTCCCTTCCCCTTTAGTTTAAAATCTAGCTGGTGCTGCTTAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCCCTTCCCCTTTAGTTTAAAATCTAGCTGGTGCTGCTTAAAA  930

seq1  CGGAATATTTGGCATGTTAAAATAATAAACATGAGTTGAATTGTTATGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAATATTTGGCATGTTAAAATAATAAACATGAGTTGAATTGTTATGGA  980

seq1  GCTTAAAGAATTTCATGAAGAGTACAGATTTAGTTGTAGCTCTTCTCCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAGAATTTCATGAAGAGTACAGATTTAGTTGTAGCTCTTCTCCTG  1030

seq1  TGGCTCTGTTGCTCACTAGCTGTTTTACAAACATGATTTTGTTTGTTTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGTTGCTCACTAGCTGTTTTACAAACATGATTTTGTTTGTTTTA  1080

seq1  AAATGGAGTTGTGGAAATCAGATGGAGAATTC  1132
      ||||||||||||||||||||||||||||||||
seq2  AAATGGAGTTGTGGAAATCAGATGGAGAATTC  1112

seq1: chr1_11545585_11546733
seq2: B6Ng01-075O06.g_69_1212

seq1  GAATTCAGGAGTTTGGAGTTAATGTAGCATTACACTCAAACTCTGCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGTTTGGAGTTAATGTAGCATTACACTCAAACTCTGCTTCT  50

seq1  GGATGCTGTGGGACATCTGGACAGAGTCAGCCACCGGCCACTGCCCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGTGGGACATCTGGACAGAGTCAGCCACCGGCCACTGCCCTGAG  100

seq1  TTTCCAGCAACCAAGTGTATATATCAGGTGGTAATTTAGGGTGGTGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCAACCAAGTGTATATATCAGGTGGTAATTTAGGGTGGTGTTGA  150

seq1  AGTTGCAAATAAAGATATGGGAGTCATTACTGTACAAATAAAGAAACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAAATAAAGATATGGGAGTCATTACTGTACAAATAAAGAAACTCA  200

seq1  CAAGTTATGGAACACACGCATTTGAGATTCATGTAGTAAAATGATCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTATGGAACACACGCATTTGAGATTCATGTAGTAAAATGATCAAAT  250

seq1  GAATAAAGAAAATGAATCTTTAGGGAGATTGAATGAAAACAAAACAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGAAAATGAATCTTTAGGGAGATTGAATGAAAACAAAACAAGAA  300

seq1  TGTGTTCATAAAAATCAAGGAAACACAGGAACTTGTTTACCACAGGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCATAAAAATCAAGGAAACACAGGAACTTGTTTACCACAGGTGTG  350

seq1  TATCCAGTGCTAGATAAAGTCTGTAAGAGGAAGACAGAATCACACATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGTGCTAGATAAAGTCTGTAAGAGGAAGACAGAATCACACATGTT  400

seq1  ATATGGGCAGTTGTCTCTGGGCTGTGCTAACATTGACCCTTGGGGTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGCAGTTGTCTCTGGGCTGTGCTAACATTGACCCTTGGGGTGGTA  450

seq1  TTCTAACAAGTGGATAGCTGGAAACTACATCATTTTTTCTGTGTGCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACAAGTGGATAGCTGGAAACTACATCATTTTTTCTGTGTGCTTTT  500

seq1  ATCTAAATATGCTATAAGGAGAATCATTCTTCTGCTTTTGAATAGCTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAATATGCTATAAGGAGAATCATTCTTCTGCTTTTGAATAGCTATC  550

seq1  TGGGAGTAAATGAAAGTTTCTTGTTTTCTACTTGGTGTTAGTTCACCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTAAATGAAAGTTTCTTGTTTTCTACTTGGTGTTAGTTCACCTTG  600

seq1  CAGAGTTTCCCTGATAAAATAATTTATGGGAGCAGAGTCATCTGTGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTCCCTGATAAAATAATTTATGGGAGCAGAGTCATCTGTGGCTC  650

seq1  ACACTTTCTGTTGTTGCTTGACTTTCTGCACTCTTGTAGAACATCATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTCTGTTGTTGCTTGACTTTCTGCACTCTTGTAGAACATCATCAA  700

seq1  GGTTGGAATATATGATAGAGACCATCCTTCACCTCAAGGTTGATGGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAATATATGATAGAGACCATCCTTCACCTCAAGGTTGATGGAAGC  750

seq1  ACATCAG-AAGGAAGGGACTGGGAGCCATCTACAACCTTTAAAAGCGCAC  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGAAAGGAAGGGACTGGGAGCCATCTACAACCTTTAAAAGCGCAC  800

seq1  CCCTAGTGACCTTCCTTCTAAAGTCACTTTTTGTGACTCCACC-TTCTAA  848
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCTAGTGACCTTCCTTCTAAAGTCACTTTTTGTGACTCCACCTTTCTAA  850

seq1  AGTTTTTGTCACTTCCCCAAATATTTGCCAACAGTTTTGGGTTAAGCACT  898
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGTTTTTGTCACTTCCCCAAATATTTGCCAACAG-TTTGGGTTAAGCACT  899

seq1  CAGCTCATGAGGCTTT-GGAGGACTGTAAATGTTTGGTCTGATTCTTGCC  947
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAGCTCATGAGGCTTTGGGAGGACTGTAAATGTTTGGTCTGATTCTTGCC  949

seq1  CCAAGTCCCATGCTTACAGAGAATAAGACTCAGACTCAAAATATATTTAC  997
      |  |||||||||||||  ||||||||||||||||||| ||||||||||||
seq2  C--AGTCCCATGCTTAACGAGAATAAGACTCAGACTC-AAATATATTTAC  996

seq1  AAATACAATTGACCATATAGCTAGA-CTCTTTTCTGACTTTTCATAACTT  1046
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  AAATACAATTGACCATATAGCTAGACCTCTTTTCTGACTTTTCA-AACTT  1045

seq1  TAAATAGCTCATTTATTTTAACCAATATTCTGCCATGTGGCTGGATATCT  1096
      |||||||||||||||  || |||||||||| || | ||||||||| || |
seq2  TAAATAGCTCATTTA--TTGACCAATATTC-GCAAGGTGGCTGGA-ATAT  1091

seq1  GTACTTAGGTACTGTACTGG-CTAGTTTTGTGTCGACTTGACACAGCTGG  1145
      | |  || |||||| ||||| |||||||||||||||| |||  |||||||
seq2  GGAACTAAGTACTGGACTGGCCTAGTTTTGTGTCGAC-TGAACCAGCTGG  1140

seq1  AGTT  1149
      ||||
seq2  AGTT  1144