BAC Information

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BAC

Clone NameB6Ng01-075P02
Chromosome1 (Build37)
Map Location 43,505,052 - 43,643,081
singlet/doubletdoublet
Overlap geneNck2
Upstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644
Downstream gene1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075P02.bB6Ng01-075P02.g
ACCDH892359DH892360
length1,1181,094
definitionDH892359|Mus musculus domesticus DNA, BAC clone: B6Ng01-075P02, 5' end.DH892360|Mus musculus domesticus DNA, BAC clone: B6Ng01-075P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,641,956 - 43,643,081)(43,505,052 - 43,506,153)
sequence
gaattcttaattggaatgtgcaaggcactggatctgctccctcaaataaa
caaagcatattcccaataaccatacacagtgaaccccagtattatacatt
atgattgctgtgtaattaaaaggtggaaactttatttaacttcatttttt
gtgttttctgattctttcatgtggccatttatgttatcttggctatacat
atccttttgcttatttgcacattaagcatattggattctcttttaaagcc
cttactagtaaaatatattaaaagcttttttttttttttttcagttctta
ccccatctttttagtttctgctgatttcctgtttgtttctgaaaccgagt
gttgctatgttgctaaggctcgattcgaacacctggctcaagccatcttc
ttaagtagccaggacaccagagcacagcaaagtttgcctctgcatcctgg
ttggaggaatggtacttcttgtctctaatgaggtcacctttgcccttgtt
tcctcctccatgcttaatgcttcctgtgaaatataaaatacttttcatct
caaattcatcaacatacagttttacagcattatctaccatttacttttca
tgttatgcctttaatactgaatcacctactgtgcaatgtgaataggatta
ggcatctgcattgtgggctgactatgccacttctctccaagaacctgcac
tgttcctccccaacatcttcttctttccaacatacttcaaggccaaatat
ccgaagggcagcaggaaacagaccttcctccattttgcagttttagacat
tacctatcaaattgccatgatggtagacaagatctaacttttgggcctgt
aggggaccaaaagcttacacagcttccttcccttcttttatccccatttc
ttgacggtaagcatccttggtaacttgacttttagttcctgcacacccaa
tcatgtagttactcttctttccattttggagatttctcacattattgtcc
aatctaagtttatgagtaagatcatctgtcttgttttctcacttttccag
tctgatacatttgattgttgagttcacctgatctagtacagtatttgtgc
agaactaggggacaagat
gaattcaagactgcttgttgcaagtgcagagcagtgtagggaacagtggt
tggggaaacttgtaagctaacatttcttacaaaaggaccgggaagcttcc
catagagacttaggaaattcattttcccatccagagggacttcaaatgtt
gctttggaattgtttctctttcctaaaaaaatgagtgatagaaacatttc
tcaaggtgttttcaaaggacatatgtgaaaaaacaatgatgccatttgtg
tgctgttctgtgtaagttaggcagccttttaaaacaagctatcagaggta
tgcagccatggtgttttttgttttttttttgtttgtttgtttgtttgttt
gttttttcgagacagggtttctctgtgtagccctggctgtcctggaactc
actttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcc
tcccgagtgctgggattaaagccgtgcaacaccacgccccgcaatgcatt
tctttaggcaatcagagtagtgtaatttttaaaaagacttttaattttca
gcaattcactttgcacaaagcacagagaacatgatggtaagagaatcatg
tcctcggcaccccagttcccaccccacttcccgccctttctttcccctgg
agttcacttccacctgaaattctcagtcctccaggccatgacagtgaaaa
ctgttctttagatcgacatagcagtaccacgctagggtcacactggtatt
tccatctctgactagtacttgtgagtagccaaaggtccctttcccagatt
atatggctgtcttaaatttcatcatctttttgaagggccatttttctcct
gtatttcaccatcttccttctcaactaagaggcaataactgtgtcctggg
acatccaacagatctttcttggtggtttcctttggacatctgtgaccttc
ttcctagttgtcttcattatttcttaccctggtatagctggagtgtgatc
atagcatttgatccataggtcatgtgtgacaacacatttctagcacctgt
gatttctgacctggtgtcaatgagtggtgatgaaacacgaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_43641956_43643081
seq2: B6Ng01-075P02.b_46_1163 (reverse)

seq1  ATCTTGGTCCCCTAGTTCTGCAC-AATACTGTACTTAGAATACAGTGAAC  49
      ||||| ||||||||||||||||| |||||||||| ||| ||   ||||||
seq2  ATCTT-GTCCCCTAGTTCTGCACAAATACTGTAC-TAG-ATCAGGTGAAC  47

seq1  TCAAACAATCAAATGTTATCAGACTGGAAAAGTGAGAAAACAAAGAACAA  99
      || |||||||||||| ||||||||||||||||||||||||| ||||   |
seq2  TC-AACAATCAAATG-TATCAGACTGGAAAAGTGAGAAAAC-AAGA--CA  92

seq1  GATGATCTTACTCATAAACTTAGATTGGACAATAATGTTGAGAAATCTTC  149
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  GATGATCTTACTCATAAACTTAGATTGGACAATAATG-TGAGAAATC-TC  140

seq1  CAAAATGGAAAGAAGAGTAACTACATGATTGGGTGTGCAGGAACTAAAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGAAAGAAGAGTAACTACATGATTGGGTGTGCAGGAACTAAAAG  190

seq1  TCAAGTTACCAAGGATGCTTACCGTCAAGAAATGGGGATAAAAGAAGGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTACCAAGGATGCTTACCGTCAAGAAATGGGGATAAAAGAAGGGA  240

seq1  AGGAAGCTGTGTAAGCTTTTGGT-CCCTACAGGCCCAAAAGTTAGATCTT  298
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGAAGCTGTGTAAGCTTTTGGTCCCCTACAGGCCCAAAAGTTAGATCTT  290

seq1  GTCTACCATCATGGCAATTTGATAGGTAATGTCTAAAACTGCAAAATGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCATCATGGCAATTTGATAGGTAATGTCTAAAACTGCAAAATGGA  340

seq1  GGAAGGTCTGTTTCCTGCTGCCCTTCGGATATTTGGCCTTGAAGTATGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTCTGTTTCCTGCTGCCCTTCGGATATTTGGCCTTGAAGTATGTT  390

seq1  GGAAAGAAGAAGATGTTGGGGAGGAACAGTGCAGGTTCTTGGAGAGAAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAGAAGATGTTGGGGAGGAACAGTGCAGGTTCTTGGAGAGAAGT  440

seq1  GGCATAGTCAGCCCACAATGCAGATGCCTAATCCTATTCACATTGCACAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGTCAGCCCACAATGCAGATGCCTAATCCTATTCACATTGCACAG  490

seq1  TAGGTGATTCAGTATTAAAGGCATAACATGAAAAGTAAATGGTAGATAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGATTCAGTATTAAAGGCATAACATGAAAAGTAAATGGTAGATAAT  540

seq1  GCTGTAAAACTGTATGTTGATGAATTTGAGATGAAAAGTATTTTATATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAAACTGTATGTTGATGAATTTGAGATGAAAAGTATTTTATATTT  590

seq1  CACAGGAAGCATTAAGCATGGAGGAGGAAACAAGGGCAAAGGTGACCTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAGCATTAAGCATGGAGGAGGAAACAAGGGCAAAGGTGACCTCA  640

seq1  TTAGAGACAAGAAGTACCATTCCTCCAACCAGGATGCAGAGGCAAACTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGACAAGAAGTACCATTCCTCCAACCAGGATGCAGAGGCAAACTTT  690

seq1  GCTGTGCTCTGGTGTCCTGGCTACTTAAGAAGATGGCTTGAGCCAGGTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCTCTGGTGTCCTGGCTACTTAAGAAGATGGCTTGAGCCAGGTGT  740

seq1  TCGAATCGAGCCTTAGCAACATAGCAACACTCGGTTTCAGAAACAAACAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATCGAGCCTTAGCAACATAGCAACACTCGGTTTCAGAAACAAACAG  790

seq1  GAAATCAGCAGAAACTAAAAAGATGGGGTAAGAACTGAAAAAAAAAAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGCAGAAACTAAAAAGATGGGGTAAGAACTGAAAAAAAAAAAAA  840

seq1  AAAGCTTTTAATATATTTTACTAGTAAGGGCTTTAAAAGAGAATCCAATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTTAATATATTTTACTAGTAAGGGCTTTAAAAGAGAATCCAATA  890

seq1  TGCTTAATGTGCAAATAAGCAAAAGGATATGTATAGCCAAGATAACATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAATGTGCAAATAAGCAAAAGGATATGTATAGCCAAGATAACATAA  940

seq1  ATGGCCACATGAAAGAATCAGAAAACACAAAAAATGAAGTTAAATAAAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCACATGAAAGAATCAGAAAACACAAAAAATGAAGTTAAATAAAGT  990

seq1  TTCCACCTTTTAATTACACAGCAATCATAATGTATAATACTGGGGTTCAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTTTTAATTACACAGCAATCATAATGTATAATACTGGGGTTCAC  1040

seq1  TGTGTATGGTTATTGGGAATATGCTTTGTTTATTTGAGGGAGCAGATCCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGGTTATTGGGAATATGCTTTGTTTATTTGAGGGAGCAGATCCA  1090

seq1  GTGCCTTGCACATTCCAATTAAGAATTC  1126
      ||||||||||||||||||||||||||||
seq2  GTGCCTTGCACATTCCAATTAAGAATTC  1118

seq1: chr1_43505052_43506153
seq2: B6Ng01-075P02.g_67_1160

seq1  GAATTCAAGACTGCTTGTTGCAAGTGCAGAGCAGTGTAGGGAACAGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACTGCTTGTTGCAAGTGCAGAGCAGTGTAGGGAACAGTGGT  50

seq1  TGGGGAAACTTGTAAGCTAACATTTCTTACAAAAGGACCGGGAAGCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAACTTGTAAGCTAACATTTCTTACAAAAGGACCGGGAAGCTTCC  100

seq1  CATAGAGACTTAGGAAATTCATTTTCCCATCCAGAGGGACTTCAAATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGACTTAGGAAATTCATTTTCCCATCCAGAGGGACTTCAAATGTT  150

seq1  GCTTTGGAATTGTTTCTCTTTCCTAAAAAAATGAGTGATAGAAACATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGAATTGTTTCTCTTTCCTAAAAAAATGAGTGATAGAAACATTTC  200

seq1  TCAAGGTGTTTTCAAAGGACATATGTGAAAAAACAATGATGCCATTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTGTTTTCAAAGGACATATGTGAAAAAACAATGATGCCATTTGTG  250

seq1  TGCTGTTCTGTGTAAGTTAGGCAGCCTTTTAAAACAAGCTATCAGAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCTGTGTAAGTTAGGCAGCCTTTTAAAACAAGCTATCAGAGGTA  300

seq1  TGCAGCCATGGTGTTTTTTGTTTTTTTTTTGTTTGTTTGTTTGTTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCATGGTGTTTTTTGTTTTTTTTTTGTTTGTTTGTTTGTTTGTTT  350

seq1  GTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC  400

seq1  ACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCC  450

seq1  TCCCGAGTGCTGGGATTAAAGCCGTGCAACACCACGCCCCGCAATGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGTGCTGGGATTAAAGCCGTGCAACACCACGCCCCGCAATGCATT  500

seq1  TCTTTAGGCAATCAGAGTAGTGTAATTTTTAAAAAGACTTTTAATTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGCAATCAGAGTAGTGTAATTTTTAAAAAGACTTTTAATTTTCA  550

seq1  GCAATTCACTTTGCACAAAGCACAGAGAACATGATGGTAAGAGAATCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCACTTTGCACAAAGCACAGAGAACATGATGGTAAGAGAATCATG  600

seq1  TCCTCGGCACCCCAGTTCCCACCCCACTTCCCGCCCTTTCTTTCCCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGGCACCCCAGTTCCCACCCCACTTCCCGCCCTTTCTTTCCCCTGG  650

seq1  AGTTCACTTCCACCTGAAATTCTCAGTCCTCCAGGCCATGACAGTGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACTTCCACCTGAAATTCTCAGTCCTCCAGGCCATGACAGTGAAAA  700

seq1  CTGTTCTTTAGATCGACATAGCAGTACCACGCTAGGGTCACACTGGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTTAGATCGACATAGCAGTACCACGCTAGGGTCACACTGGTATT  750

seq1  TCCATCTCTGACTAGTACTTGTGAGTAGCCAAAGGTCCCTTTCCCAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCTGACTAGTACTTGTGAGTAGCCAAAGGTCCCTTTCCCAGATT  800

seq1  ATATGGCTGTCTTAAATTTCATCATCTTTTTGAAGGGCCATTTTTCTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCTGTCTTAAATTTCATCATCTTTTTGAAGGGCCATTTTTCTCCT  850

seq1  GTATTTCACCATCTTCCTTCTCAACTAAGAGGCAATAACTGTGTCCTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCACCATCTTCCTTCTCAACTAAGAGGCAATAACTGTGTCCTGGG  900

seq1  ACATCCAACAGATCTTTCTTGGTGGTTTCCTTTGGACATCTGTGACCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAACAGATCTTTCTTGGTGGTTTCCTTTGGACATCTGTGACCTTC  950

seq1  TTCCTAGTTGTCTTCATTATTTCTTACCCTGGTATAGGCTGGAAGGTGTT  1000
      |||||||||||||||||||||||||||||||||||| ||||||  ||| |
seq2  TTCCTAGTTGTCTTCATTATTTCTTACCCTGGTATA-GCTGGA--GTG-T  996

seq1  GATCATAGCATTTGATCCATAGTTCATGTGTGACAACACATTTCTTAGCA  1050
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  GATCATAGCATTTGATCCATAGGTCATGTGTGACAACACATTTC-TAGCA  1045

seq1  CCTTGTTGATTTCTGACCT-GTGTCATTGAGGTTGGTGATGAAATCAGAA  1099
      |||   ||||||||||||| |||||| ||||  |||||||||||   |||
seq2  CCT--GTGATTTCTGACCTGGTGTCAATGAG--TGGTGATGAAACACGAA  1091

seq1  TCT  1102
      |||
seq2  TCT  1094