BAC Information

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BAC

Clone NameB6Ng01-075P16
Chromosome1 (Build37)
Map Location 66,172,587 - 66,298,892
singlet/doubletdoublet
Overlap geneMtap2
Upstream geneIdh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
Downstream geneC030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075P16.bB6Ng01-075P16.g
ACCDH892385DH892386
length1,1291,159
definitionDH892385|Mus musculus domesticus DNA, BAC clone: B6Ng01-075P16, 5' end.DH892386|Mus musculus domesticus DNA, BAC clone: B6Ng01-075P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,172,587 - 66,173,730)(66,297,730 - 66,298,892)
sequence
gaattcctcagggaactattttttcttgtaatacattttaaattaaaaaa
taataacatttccctttgtgccttctagcctctcacaggtaacgaagaag
tctgtaggagagaataaccaaataattttacctataatttacttttaatg
gataaataggattaggtaataaaatttttgtctaaatagatccaaaaatc
tctctttaaaattaaaaataatctaactgacagcatagtttcacagttta
atgaacagtattttattttcagtgcctaacataactgtgcatctataact
gataacatcttagagttaattaaatatgatatttctagacactgttgcta
ggagataatatatgagttagatttgtacaacaaagcacacctggagagtt
acctttctactgctttggccaaatgcctaacagaagcagcatgaagaagg
aaagctcactgtggctcacaactggaggggatactttgttcatggtgggg
aaagatgagggaggaatggcaggtggctcttcacactgaatctgacttta
agaagcagggagtgatcaaggaacttacagccagtctgatcctcaagcca
caccctcagtaacttcctccaggactcatctctcagagtttctacaaatt
tccaaatcagagacatcaacctagaatcaaacacttgagcctatggagag
acagaagggtttctataaatggaagagtctgggtctatggaatatatatt
ggttataaatgtagtcattgttagcaggactgtcataattaggtatcttg
tgttaaagctgtggctaccattattatgaaatctgctcagaacagcaaaa
atgctagtaggtaaagacaaattttgctttaatgatgaaaaattttgaca
actttatcagagtaaaccaagaatcattgagcaacaatattgatttgact
agttggtttcagtatccaatacctatcaaaatatttggcttttttcttga
aaaagaaaacaatcagtctaacacctaaaatgataaacttataaattgag
gaaacaaatgtatattgtcattatattacatatataaatgctgctaatct
tgatgtcttgatatttatgactattatta
gaattcctgtcctacagaagaaaatagaggggtaaatagattcccaagcc
catctgtgtgagggacctctaaggctctgttattactccaacctcagatg
aagctgtttagagtggctcctaaaagccagctaatgagaaaacagaacaa
agaaaggacatcttagcattctgctcgttaattaacacgagtgattcaca
aatgcactttcaactctgctctccttacataatgtgttctgtttgaggaa
caaattgtggaactaaatgtgttttcctgttcagaaagtaaaccatcctt
taaagtataagccagcctttgtttatcttttaaggaacgaaaatgagggc
acatttatttcaccaaaacttagctagtgaggtgacagaggtaaaacatt
caataaccaaagtaatgtaaaacacatactggcgagaacaatggtggtta
ttagtgagccatggtgtgatgtatacagttcatgcttgatcctgctcttg
ctcacactctgggcagaatatcctgaaccagcaagctaaagactcaaaaa
gcccttacaaaagcttatttaagctagttcacaatcaatataagcacagc
actgaccttaattcttgccagcagtcacaatataggttggttcagatcaa
tataaatctaaaaggaaaagaaaaaaaaataacaccattagattaaatca
gtcaggtaagtcagcctttctttgtctaagaaggaaagccaaggcaggcg
ttaaacaacttgtttattgtgccctaaaatgtactggctgacacagatcg
ctttacaacacaccatgcttgtgtagaagtaacttgtaattcacagtaaa
ttttaggtttcatttttaaaacgtgtaataaatgtcaaaattagttccga
tttttgctttcagcattttatgcattcaaagaattcctaagcatatagtc
aaaacatccaccttcgacttgtaagataccaccatttgccctggatattt
ttcttagtaattaaattactcatttggaccctgccgatattttcatcaac
atgatgagatgtgatggttactgagacaaccttttatgatatattgagaa
ttcagaaataagcaactaggactagttcctttatgagaatttccaacata
gaagctcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66172587_66173730
seq2: B6Ng01-075P16.b_46_1174

seq1  GAATTCCTCAGGGAACTATTTTTTCTTGTAATACATTTTAAATTAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGGGAACTATTTTTTCTTGTAATACATTTTAAATTAAAAAA  50

seq1  TAATAACATTTCCCTTTGTGCCTTCTAGCCTCTCACAGGTAACGAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACATTTCCCTTTGTGCCTTCTAGCCTCTCACAGGTAACGAAGAAG  100

seq1  TCTGTAGGAGAGAATAACCAAATAATTTTACCTATAATTTACTTTTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGAGAGAATAACCAAATAATTTTACCTATAATTTACTTTTAATG  150

seq1  GATAAATAGGATTAGGTAATAAAATTTTTGTCTAAATAGATCCAAAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATAGGATTAGGTAATAAAATTTTTGTCTAAATAGATCCAAAAATC  200

seq1  TCTCTTTAAAATTAAAAATAATCTAACTGACAGCATAGTTTCACAGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTAAAATTAAAAATAATCTAACTGACAGCATAGTTTCACAGTTTA  250

seq1  ATGAACAGTATTTTATTTTCAGTGCCTAACATAACTGTGCATCTATAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGTATTTTATTTTCAGTGCCTAACATAACTGTGCATCTATAACT  300

seq1  GATAACATCTTAGAGTTAATTAAATATGATATTTCTAGACACTGTTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACATCTTAGAGTTAATTAAATATGATATTTCTAGACACTGTTGCTA  350

seq1  GGAGATAATATATGAGTTAGATTTGTACAACAAAGCACACCTGGAGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAATATATGAGTTAGATTTGTACAACAAAGCACACCTGGAGAGTT  400

seq1  ACCTTTCTACTGCTTTGGCCAAATGCCTAACAGAAGCAGCATGAAGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTACTGCTTTGGCCAAATGCCTAACAGAAGCAGCATGAAGAAGG  450

seq1  AAAGCTCACTGTGGCTCACAACTGGAGGGGATACTTTGTTCATGGTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCACTGTGGCTCACAACTGGAGGGGATACTTTGTTCATGGTGGGG  500

seq1  AAAGATGAGGGAGGAATGGCAGGTGGCTCTTCACACTGAATCTGACTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAGGGAGGAATGGCAGGTGGCTCTTCACACTGAATCTGACTTTA  550

seq1  AGAAGCAGGGAGTGATCAAGGAACTTACAGCCAGTCTGATCCTCAAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGGGAGTGATCAAGGAACTTACAGCCAGTCTGATCCTCAAGCCA  600

seq1  CACCCTCAGTAACTTCCTCCAGGACTCATCTCTCAGAGTTTCTACAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCAGTAACTTCCTCCAGGACTCATCTCTCAGAGTTTCTACAAATT  650

seq1  TCCAAATCAGAGACATCAACCTAGAATCAAACACTTGAGCCTATGGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATCAGAGACATCAACCTAGAATCAAACACTTGAGCCTATGGAGAG  700

seq1  ACAGAAGGGTTTCTATAAATGGAAGAGTCTGGGTCTATGGAATATATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGGTTTCTATAAATGGAAGAGTCTGGGTCTATGGAATATATATT  750

seq1  GGTTATAAATGTAGTCATTGTTAGCAGGACTGTCATAATTAGGTATCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATAAATGTAGTCATTGTTAGCAGGACTGTCATAATTAGGTATCTTG  800

seq1  TGTTAAAGCTGTGGCTACCATTATTATGAAATCTGCTCAGAACAGCAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGCTGTGGCTACCATTATTATGAAATCTGCTCAGAACAGCAAAA  850

seq1  ATGCTAGTAGGTAAAGACAAATTTTGCTTTAATGATGAAAAATTTTGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGTAGGTAAAGACAAATTTTGCTTTAATGATGAAAAATTTTGACA  900

seq1  ACTTTATCAGAGTAAACCAAAGAATCATTGAGGCAACAATATTGATTTGA  950
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  ACTTTATCAGAGTAAACC-AAGAATCATTGA-GCAACAATATTGATTTGA  948

seq1  CTAGTTGGTTTCAAGTAATCCAATACCTATCAAAAATATTTGGC-TTTTT  999
      |||||||||||| ||| |||||||||||||| |||||||||||| |||||
seq2  CTAGTTGGTTTC-AGT-ATCCAATACCTATC-AAAATATTTGGCTTTTTT  995

seq1  CTTGAAAAAGAAAACAATCAGTCTAACACCTAAAAATGATAAACTTAATA  1049
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  CTTGAAAAAGAAAACAATCAGTCTAACACCT-AAAATGATAAACTT-ATA  1043

seq1  AATTGAAGAAACAAATGTATATGTTCAATTATA-TACATATTATTAAAAT  1098
      |||||| |||||||||||||||  || |||||| |||||| |||  ||||
seq2  AATTGAGGAAACAAATGTATATTGTC-ATTATATTACATA-TAT--AAAT  1089

seq1  GCCTTGCTATTCTTTGATGTTCTTTAAATATTTATGACTATTATTA  1144
      ||  ||||| || |||||| ||||   |||||||||||||||||||
seq2  GC--TGCTAATC-TTGATG-TCTT--GATATTTATGACTATTATTA  1129

seq1: chr1_66297730_66298892
seq2: B6Ng01-075P16.g_71_1229 (reverse)

seq1  AGGAGCTTCTATGTTGTAATTTCT-ATAAGGACACTAGTCTTAGTTGCTT  49
      |||||||||||||||| || |||| |||| |  ||||||| ||||||| |
seq2  AGGAGCTTCTATGTTGGAAATTCTCATAAAGGAACTAGTCCTAGTTGC-T  49

seq1  TATTTCTGAATTTCTCATTAATATCATACA--GTTGTCTCCAGTACCCAT  97
      |||||||||| |||||| | |||||||| |  ||||||| ||||| ||||
seq2  TATTTCTGAA-TTCTCAAT-ATATCATAAAAGGTTGTCT-CAGTAACCAT  96

seq1  CACATCTCATCATGTTGATGAAAATATACGGCAGGGTCCAAATGAGTTAA  147
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  CACATCTCATCATGTTGATGAAAATAT-CGGCAGGGTCCAAATGAG-TAA  144

seq1  TTTAATTACTAAG-AAAATATCCAGGGCAAATGGTGGTATCTTACAAGTC  196
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTAATTACTAAGAAAAATATCCAGGGCAAATGGTGGTATCTTACAAGTC  194

seq1  GAAGGTGGATGTTTTTGACTATATGCTTAGGAATTCTTTGAATGCATAAA  246
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGATG-TTTTGACTATATGCTTAGGAATTCTTTGAATGCATAAA  243

seq1  ATGCTGAAAGCAAAAATCGGAACTAATTTTGACATTTATTACACGTTTTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAAAGCAAAAATCGGAACTAATTTTGACATTTATTACACGTTTTA  293

seq1  AAAATGAAACCTAAAATTTACTGTGAATTTACAAGTTACTTCTACACAAG  346
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAATGAAACCTAAAATTTACTGTGAA-TTACAAGTTACTTCTACACAAG  342

seq1  CATGGTGTGTTGTAAAGCGATCTGTGTCAGCCAGTACATTTTAGGGCACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTGTTGTAAAGCGATCTGTGTCAGCCAGTACATTTTAGGGCACA  392

seq1  ATAAACAAGTTGTTTAACGCCTGCCTTGGCTTTCCTTCTTAGACAAAGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAGTTGTTTAACGCCTGCCTTGGCTTTCCTTCTTAGACAAAGAA  442

seq1  AGGCTGACTTACCTGACTGATTTAATCTAATGGTGTTATTTTTTTTTCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGACTTACCTGACTGATTTAATCTAATGGTGTTATTTTTTTTTCTT  492

seq1  TTCCTTTTAGATTTATATTGATCTGAACCAACCTATATTGTGACTGCTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTAGATTTATATTGATCTGAACCAACCTATATTGTGACTGCTGG  542

seq1  CAAGAATTAAGGTCAGTGCTGTGCTTATATTGATTGTGAACTAGCTTAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTAAGGTCAGTGCTGTGCTTATATTGATTGTGAACTAGCTTAAA  592

seq1  TAAGCTTTTGTAAGGGCTTTTTGAGTCTTTAGCTTGCTGGTTCAGGATAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTTGTAAGGGCTTTTTGAGTCTTTAGCTTGCTGGTTCAGGATAT  642

seq1  TCTGCCCAGAGTGTGAGCAAGAGCAGGATCAAGCATGAACTGTATACATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCAGAGTGTGAGCAAGAGCAGGATCAAGCATGAACTGTATACATC  692

seq1  ACACCATGGCTCACTAATAACCACCATTGTTCTCGCCAGTATGTGTTTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGGCTCACTAATAACCACCATTGTTCTCGCCAGTATGTGTTTTA  742

seq1  CATTACTTTGGTTATTGAATGTTTTACCTCTGTCACCTCACTAGCTAAGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTTTGGTTATTGAATGTTTTACCTCTGTCACCTCACTAGCTAAGT  792

seq1  TTTGGTGAAATAAATGTGCCCTCATTTTCGTTCCTTAAAAGATAAACAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGAAATAAATGTGCCCTCATTTTCGTTCCTTAAAAGATAAACAAA  842

seq1  GGCTGGCTTATACTTTAAAGGATGGTTTACTTTCTGAACAGGAAAACACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTTATACTTTAAAGGATGGTTTACTTTCTGAACAGGAAAACACA  892

seq1  TTTAGTTCCACAATTTGTTCCTCAAACAGAACACATTATGTAAGGAGAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCCACAATTTGTTCCTCAAACAGAACACATTATGTAAGGAGAGC  942

seq1  AGAGTTGAAAGTGCATTTGTGAATCACTCGTGTTAATTAACGAGCAGAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGAAAGTGCATTTGTGAATCACTCGTGTTAATTAACGAGCAGAAT  992

seq1  GCTAAGATGTCCTTTCTTTGTTCTGTTTTCTCATTAGCTGGCTTTTAGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGATGTCCTTTCTTTGTTCTGTTTTCTCATTAGCTGGCTTTTAGGA  1042

seq1  GCCACTCTAAACAGCTTCATCTGAGGTTGGAGTAATAACAGAGCCTTAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCTAAACAGCTTCATCTGAGGTTGGAGTAATAACAGAGCCTTAGA  1092

seq1  GGTCCCTCACACAGATGGGCTTGGGAATCTATTTACCCCTCTATTTTCTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTCACACAGATGGGCTTGGGAATCTATTTACCCCTCTATTTTCTT  1142

seq1  CTGTAGGACAGGAATTC  1163
      |||||||||||||||||
seq2  CTGTAGGACAGGAATTC  1159