BAC Information

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BAC

Clone NameB6Ng01-076A01
Chromosome1 (Build37)
Map Location 5,874,676 - 5,875,619
singlet/doubletsinglet
Overlap genenone
Upstream geneTcea1, Rgs20, Atp6v1h, EG636659, Oprk1
Downstream geneNpbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076A01.bB6Ng01-076A01.g
ACCDH892401DH892402
length1,2691,068
definitionDH892401|Mus musculus domesticus DNA, BAC clone: B6Ng01-076A01, 5' end.DH892402|Mus musculus domesticus DNA, BAC clone: B6Ng01-076A01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatctgaattgaatcagaaactttatttaagagctgaaactctg
aaattgctagtggtatcacttcaatgtggaggcattgtaaaagacttggt
tctctgaactatgagagttcaagagatagatccagaaaatagctaacaga
atagcatgaaatttaaatgcttctctgaagcaaaggaaacaatacattga
attaacagagggcccataggagaaaatctctgttagctatacactagata
ggaattgatactgagaatctatagaactttaaaaaatgaaacaccaaaac
aaatttattcaatagaaatggatttgaacacatagatctcaatatcaata
agtgtgatagcttgtatatccttggaccagggagtggcaccgtttgaagg
tgtggcctttgttggaataggtgtgacctggttggaatgggtgtgtcact
gtgggtgtgggtataagatcctcaccttagttgcctggaagtcagtcttc
ccctggcagcctttggatgaagaaatagaactctcagttcctcctgcgcc
atgcctgcctggatactgctatgttcccaccttgatgataatggactgaa
cctcaaacctgtaagccagccccaattaaatgttgtttttttataagact
tgccttggtcatggtgtctgttcacagcagtaaaaccctaactaagacaa
taagtatatgaaaaatttcaacatcacttgtaatcaagaaaatgaaaatt
aaagctacatttaaattgcatctcatctgagttaaaatgtcattcatcaa
gaaacagcaattgctggaaagaatgtgcagagggacaatttcatattgct
catagcaatgtaaattgtgaatgtcaatatgaaggctcctaaaaactcag
aactctcttaaaaatcagaatcctatgtgagccagatatccacatctggg
aatatacccaaaggactatcaatcagtatactaaagagatacatgcacag
ctatacttattcagttctatccacagcagccaagataaggaaggaaccat
cttgaatgtgcatcaacggatgaatgggtttatcaaattataccacgaat
gggtccaaatcagagaggacaacaaccacacacctgattacggttctttt
tagcctgaaagaaaaattcacattccatggaaagaaatagaactgctatg
tagtaatcagattgagaggttctctttcaacttaagatttaagtgccctc
tctgggtggcgctcgtgcc
gaattcaagaagatagactccacagaaccaaataaccctactgaaaaaaa
tggggtacaggattaaacaaagaattcttaactaaagaatcttgaatggc
caagaagcacctaaagaaatgttcagcattcttagtcatcagggaaatgc
aaatcaaaacaactttgagattccacctcataccagtcagaatggctaag
ataaaaaactcagttgacagcagaatctggtaaagatgtggagaaagagg
aacactcctctattgatggtgggatggcaagatgttacaacccctctgga
aatgagtttggtggtttctcagaaaattggacatagtactaactaaggac
tgagttctatcactcctgggcatatacaactccaacatataacaaggaaa
catgctccactatgttcatagcagccttattttattttttatgtgtgggt
ctttttcctgtgtatatgtctatccatcacatatcccggcgctagcagga
gccagaatagggcattttatcctctagaactagagatacagtgggtggtg
agccaccaggtgggttctgggaatggaacctgaatcctgtgtaagagcac
ctagtgttcttaaacagtgagccatatatctgatgtcattaaatattcta
tttttttttatttcttcaaactaacatgctgacttctatagttgttatac
aaactcacagtctaccaggagtgagtcagaatttctcctcatttattttc
tcaatgagagtcagtctgaggagaaatcgaaattttaaagtaactatcca
gagaaaagtaaataatttctctgatagttaaggtatctgaacacttttat
ttaaatatttattggatcattgggtgtctccctttgcaaatgtctataaa
gtttattagcccaattgtaacttagatatttgactttggtgtttaatttt
agagctctttatgtattaaagatgccagtcttctgccctgatgatatttg
cagagattttggctattctgaggctgtcttcaccctggtggttatttgct
ctgtataagtaagttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_5874676_5875619
seq2: B6Ng01-076A01.g_198_1135

seq1  CTTAGTCATCAGGGAAATGCAAATCAAAACAACTTTGAGATTCCACCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCATCAGGGAAATGCAAATCAAAACAACTTTGAGATTCCACCTCA  50

seq1  TACCAGTCAGAATGGCTAAGATAAAAAACTCAGTTGACAGCAGAATCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTCAGAATGGCTAAGATAAAAAACTCAGTTGACAGCAGAATCTGG  100

seq1  TAAAGATGTGGAGAAAGAGGAACACTCCTCTATTGATGGTGGGATGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGTGGAGAAAGAGGAACACTCCTCTATTGATGGTGGGATGGCAA  150

seq1  GATGTTACAACCCCTCTGGAAATGAGTTTGGTGGTTTCTCAGAAAATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTACAACCCCTCTGGAAATGAGTTTGGTGGTTTCTCAGAAAATTGG  200

seq1  ACATAGTACTAACTAAGGACTGAGTTCTATCACTCCTGGGCATATACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTACTAACTAAGGACTGAGTTCTATCACTCCTGGGCATATACAAC  250

seq1  TCCAACATATAACAAGGAAACATGCTCCACTATGTTCATAGCAGCCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATATAACAAGGAAACATGCTCCACTATGTTCATAGCAGCCTTAT  300

seq1  TTTATTTTTTATGTGTGGGTCTTTTTCCTGTGTATATGTCTATCCATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTATGTGTGGGTCTTTTTCCTGTGTATATGTCTATCCATCAC  350

seq1  ATATCCCGGCGCTAGCAGGAGCCAGAATAGGGCATTTTATCCTCTAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCGGCGCTAGCAGGAGCCAGAATAGGGCATTTTATCCTCTAGAAC  400

seq1  TAGAGATACAGTGGGTGGTGAGCCACCAGGTGGGTTCTGGGAATGGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATACAGTGGGTGGTGAGCCACCAGGTGGGTTCTGGGAATGGAACC  450

seq1  TGAATCCTGTGTAAGAGCACCTAGTGTTCTTAAACAGTGAGCCATATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTGTGTAAGAGCACCTAGTGTTCTTAAACAGTGAGCCATATATC  500

seq1  TGATGTCATTAAATATTCTATTTTTTTTTATTTCTTCAAACTAACATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCATTAAATATTCTATTTTTTTTTATTTCTTCAAACTAACATGCT  550

seq1  GACTTCTATAGTTGTTATACAAACTCACAGTCTACCAGGAGTGAGTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTATAGTTGTTATACAAACTCACAGTCTACCAGGAGTGAGTCAGA  600

seq1  ATTTCTCCTCATTTATTTTCTCAATGAGAGTCAGTCTGAGGAGAAATCG-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTTCTCCTCATTTATTTTCTCAATGAGAGTCAGTCTGAGGAGAAATCGA  650

seq1  AATTTTAAAGTAACTATCCAGAGAAAAGTAAATAATTTCTCTGATAGTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAGTAACTATCCAGAGAAAAGTAAATAATTTCTCTGATAGTTA  700

seq1  AGGTATCTGAACACTTTTATTTAAATATTTATTGGATCATTTGGGTGTCT  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGTATCTGAACACTTTTATTTAAATATTTATTGGATCA-TTGGGTGTCT  749

seq1  TCCTTTGCAAATGTCTATAAAGTTTATTAGCCCAATTGTTAACTAGATAA  799
       |||||||||||||||||||||||||||||||||||||| |  ||||| |
seq2  CCCTTTGCAAATGTCTATAAAGTTTATTAGCCCAATTGTAACTTAGAT-A  798

seq1  TTTGACTTTTGGTGTTTAATTTTTAGAGCTCTTTATGTATTAAAGATGCC  849
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTGAC-TTTGGTGTTTAA-TTTTAGAGCTCTTTATGTATTAAAGATGCC  846

seq1  AGTCTTCTG-CCTGATGGATAATTTGCAGAGATTTTGGCCATTCTGTAGG  898
      ||||||||| |||||| ||| |||||||||||||||||| |||||| |||
seq2  AGTCTTCTGCCCTGAT-GAT-ATTTGCAGAGATTTTGGCTATTCTG-AGG  893

seq1  CTGTCTTCACCCTGGTGGTTATTTGCTCTGTTATAAGTAAGTTGTT  944
      |||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGTCTTCACCCTGGTGGTTATTTGCTCTG-TATAAGTAAGTTGTT  938