BAC Information

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BAC

Clone NameB6Ng01-076D02
Chromosome1 (Build37)
Map Location 88,820,463 - 88,912,226
singlet/doubletdoublet
Overlap gene4930429A22Rik
Upstream gene4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, EG620213
Downstream geneLOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076D02.bB6Ng01-076D02.g
ACCDH892532DH892533
length1,1531,011
definitionDH892532|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D02, 5' end.DH892533|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,820,463 - 88,821,624)(88,911,205 - 88,912,226)
sequence
gaattcagagggaggaaggttttgttgagcacattctctgcatttaaacc
atggttcccctgactggctctggcttcctggctccacagtagcagagaag
cttgtcatgtggcattagcagagccacgaggagttcagtgggtgagtgag
taaaagaatggaacagggaaaagtcatttcaggtgcttctgagtcccatt
tcatctttgtcttataaaaaatcaaagagcttaagaaccacattcatttt
caaatacttgccagctcttgaggcttctttttgtggagtcagagttaaaa
attcctggctaggtaaaagagactttccaagaatgccatgccatttctct
ctgcccatagtatgtcctcacgagtgccacttcattactgactgaaaggt
cgaagaacaggactggtgaccttagacttttatcattttttaaaacaatc
tggaatttgactcagcatcagctgtgtcagtagaactgagagagagaatt
ggtattaaggttttggcaactgccatttttaaaagtggttgttgcacccc
ttcctaaactaggaagggcagggtaaactttgagtggtcattccagctaa
tgaggctcttaaaagacactgcagcactcacctggtgggcctctgtggca
gtgttctcagggtacggtaccatggataagtactctctttgtccctttct
tctgatatgttttaaataaatttttttgctttctctattaatcatgacac
catttaactaagaaggtgttagagtaaatattttattccttatcctatga
aagttatttcttagaatttttttttccattctcttttgcccattcaccac
cgttgacccagatccttcccaccctcattgcttgctcttaagaggacaaa
cccggagtcacgggcaaaggagacctctataaattttgttaatctggaaa
tggttctcaaaccacagtttgtaaaacactatttatgagaaaatgaagat
gggatgaagacgaaaagacatccttggaaacaataacactgtggtgtggc
acaggatcccatgccaggagtcatgagttctaattctcatgttgtttccc
aaagcacagttgcaacttggaggtaaagtgcttaagaaaacccttgttat
ttt
gaattcttaaggaaggaagagccaagtcagtttgttataccctcctaaaa
tgccacataggagaggagtgtgtgtcccaaacagggaccccactggatct
ggcagaaagggctggagggaagtagtagtgggagctgaggtgggtaggag
acagattggaaagtgagaagcaaggaaacagaggtcaaagtggctttaga
tggctgtagggaggagacagcagagactacagtgggacagcacagtgagt
aagggagtgaaaggtgtacatataagtagtgacattttaaagcagaattg
actatagtaggagagggagcccaagagatggagtaaacagtgttgcttct
gagatggccagggactggaatccaacacacaatggaagaccttctctaga
gatgggaggggtgagcagggacagagccaggtctgtaggccaggtaagga
gggtttagaactttctagcatggcttctgtcctcctgagaactagaaagt
caaattatctgcaaagaatggagagtttgagagattagaaatttgaggaa
aggatgaaggttgcagtcaaatctttggaggacaagacgaagacctagat
ggggccacgcaggaggaccaccaaagagcactcagtagctaggattagtg
aacaaccctctgcagccttgacagtagtatgaagaagaaagccaagctgg
tccaaagctggatctttccagaaaggtttgagggatgaataatgggcaag
ggagggcaatacgatatgacaacagatggatacagacgggccagggaact
aagtactgacagacatgagagagaaatgcagcccaactgagagaaagcag
agggtctgagtgacagacgttctgtaggaactaatatttatgaagttcat
ctgctctaacattcttcatatgatcttattagattctcacactacactgt
tttgagagattggtatgattagcccttaagggcagtcgaagaagcatctt
cttgaaagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88820463_88821624
seq2: B6Ng01-076D02.b_48_1200

seq1  GAATTCAGAGGGAGGAAGGTTTTGTTGAGCACATTCTCTGCATTTAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGGAGGAAGGTTTTGTTGAGCACATTCTCTGCATTTAAACC  50

seq1  ATGGTTCCCCTGACTGGCTCTGGCTTCCTGGCTCCACAGTAGCAGAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCCCCTGACTGGCTCTGGCTTCCTGGCTCCACAGTAGCAGAGAAG  100

seq1  CTTGTCATGTGGCATTAGCAGAGCCACGAGGAGTTCAGTGGGTGAGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCATGTGGCATTAGCAGAGCCACGAGGAGTTCAGTGGGTGAGTGAG  150

seq1  TAAAAGAATGGAACAGGGAAAAGTCATTTCAGGTGCTTCTGAGTCCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAATGGAACAGGGAAAAGTCATTTCAGGTGCTTCTGAGTCCCATT  200

seq1  TCATCTTTGTCTTATAAAAAATCAAAGAGCTTAAGAACCACATTCATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTGTCTTATAAAAAATCAAAGAGCTTAAGAACCACATTCATTTT  250

seq1  CAAATACTTGCCAGCTCTTGAGGCTTCTTTTTGTGGAGTCAGAGTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTTGCCAGCTCTTGAGGCTTCTTTTTGTGGAGTCAGAGTTAAAA  300

seq1  ATTCCTGGCTAGGTAAAAGAGACTTTCCAAGAATGCCATGCCATTTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGCTAGGTAAAAGAGACTTTCCAAGAATGCCATGCCATTTCTCT  350

seq1  CTGCCCATAGTATGTCCTCACGAGTGCCACTTCATTACTGACTGAAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCATAGTATGTCCTCACGAGTGCCACTTCATTACTGACTGAAAGGT  400

seq1  CGAAGAACAGGACTGGTGACCTTAGACTTTTATCATTTTTTAAAACAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAACAGGACTGGTGACCTTAGACTTTTATCATTTTTTAAAACAATC  450

seq1  TGGAATTTGACTCAGCATCAGCTGTGTCAGTAGAACTGAGAGAGAGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTGACTCAGCATCAGCTGTGTCAGTAGAACTGAGAGAGAGAATT  500

seq1  GGTATTAAGGTTTTGGCAACTGCCATTTTTAAAAGTGGTTGTTGCACCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTAAGGTTTTGGCAACTGCCATTTTTAAAAGTGGTTGTTGCACCCC  550

seq1  TTCCTAAACTAGGAAGGGCAGGGTAAACTTTGAGTGGTCATTCCAGCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAACTAGGAAGGGCAGGGTAAACTTTGAGTGGTCATTCCAGCTAA  600

seq1  TGAGGCTCTTAAAAGACACTGCAGCACTCACCTGGTGGGCCTCTGTGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTCTTAAAAGACACTGCAGCACTCACCTGGTGGGCCTCTGTGGCA  650

seq1  GTGTTCTCAGGGTACGGTACCATGGATAAGTACTCTCTTTGTCCCTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTCAGGGTACGGTACCATGGATAAGTACTCTCTTTGTCCCTTTCT  700

seq1  TCTGATATGTTTTAAATAAATTTTTTTGCTTTCTCTATTAATCATGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATATGTTTTAAATAAATTTTTTTGCTTTCTCTATTAATCATGACAC  750

seq1  CATTTAACTAAGAAGGTGTTAGAGTAAATATTTTATTCCTTATCCTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAACTAAGAAGGTGTTAGAGTAAATATTTTATTCCTTATCCTATGA  800

seq1  AAGTTATTTCTTAGAATTTTTTTTTCCATTCTCTTTTGCCCATTCACCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTTCTTAGAATTTTTTTTTCCATTCTCTTTTGCCCATTCACCAC  850

seq1  CGTTGACCCAGATCCTTCCCACCCTCATTGCTTGCTCTTAAGAGGACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGACCCAGATCCTTCCCACCCTCATTGCTTGCTCTTAAGAGGACAAA  900

seq1  CCCGGAGTCACGGGCAAAGGAGGACCTCTATAAATTTTGTTAATCTGGAA  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCCGGAGTCACGGGCAAAGGA-GACCTCTATAAATTTTGTTAATCTGGAA  949

seq1  ATGGTTCTCAAACCACAGTTTGTAAAACACTATTTTATGAGAAAA-GAAG  999
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  ATGGTTCTCAAACCACAGTTTGTAAAACACTA-TTTATGAGAAAATGAAG  998

seq1  ATGGGATGAAGACAGAAAAGGACATCCTTGGAAACAATAACACTGTGGTG  1049
      ||||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  ATGGGATGAAGAC-GAAAA-GACATCCTTGGAAACAATAACACTGTGGTG  1046

seq1  TGGCCACAGGATCCCATGCCAGGAAGTCATGAGTTCTAATCCTCAATGTG  1099
      ||| ||||||||||||||||||| |||||||||||||||| ||||   ||
seq2  TGG-CACAGGATCCCATGCCAGG-AGTCATGAGTTCTAATTCTCATGTTG  1094

seq1  TTTCCCAAGGCACAGTGGCAACATTGAAGGGAAAAGTGCTAAAGAGAGCC  1149
      |||||||| ||||||| ||||| | ||  || |||||||| |||| | ||
seq2  TTTCCCAAAGCACAGTTGCAACTTGGA--GGTAAAGTGCTTAAGAAAACC  1142

seq1  CTTTGGTTATTTT  1162
      |||  ||||||||
seq2  CTT--GTTATTTT  1153

seq1: chr1_88911205_88912226
seq2: B6Ng01-076D02.g_70_1080 (reverse)

seq1  CAGCTTTACAAAGAAGACTGCTTCTTCTGACTGGCCCTTATGGGCCTAAT  50
      |||||||   ||||||| ||||||||| |||| ||||||| ||| |||||
seq2  CAGCTTT--CAAGAAGA-TGCTTCTTC-GACT-GCCCTTAAGGG-CTAAT  44

seq1  ACATACCAAATCTCTCAAACACAGTGTAGTGTGAGAATCTAATAAGATCA  100
       |||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  -CATACC-AATCTCTCAAA-ACAGTGTAGTGTGAGAATCTAATAAGATCA  91

seq1  TATGAAGAATGTTTAGAGCAGATGTACTTCATAAATATTAGTTTCCTACA  150
      ||||||||||| |||||||||||| |||||||||||||||| ||||||||
seq2  TATGAAGAATG-TTAGAGCAGATGAACTTCATAAATATTAG-TTCCTACA  139

seq1  GAACGTCTGTCACTCAGACCCTCTGCTTTCTCTCAGTTGGGCTGCATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTCTGTCACTCAGACCCTCTGCTTTCTCTCAGTTGGGCTGCATTTC  189

seq1  TCTCTCATGTCTGTCAGTACTTAGTTCCCTGGCCCGTCTGTATCCATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATGTCTGTCAGTACTTAGTTCCCTGGCCCGTCTGTATCCATCTG  239

seq1  TTGTCATATCGTATTGCCCTCCCTTGCCCATTATTCATCCCTCAAACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATATCGTATTGCCCTCCCTTGCCCATTATTCATCCCTCAAACCTT  289

seq1  TCTGGAAAGATCCAGCTTTGGACCAGCTTGGCTTTCTTCTTCATACTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAGATCCAGCTTTGGACCAGCTTGGCTTTCTTCTTCATACTACT  339

seq1  GTCAAGGCTGCAGAGGGTTGTTCACTAATCCTAGCTACTGAGTGCTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGCTGCAGAGGGTTGTTCACTAATCCTAGCTACTGAGTGCTCTTT  389

seq1  GGTGGTCCTCCTGCGTGGCCCCATCTAGGTCTTCGTCTTGTCCTCCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCCTCCTGCGTGGCCCCATCTAGGTCTTCGTCTTGTCCTCCAAAG  439

seq1  ATTTGACTGCAACCTTCATCCTTTCCTCAAATTTCTAATCTCTCAAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTGCAACCTTCATCCTTTCCTCAAATTTCTAATCTCTCAAACTC  489

seq1  TCCATTCTTTGCAGATAATTTGACTTTCTAGTTCTCAGGAGGACAGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTTTGCAGATAATTTGACTTTCTAGTTCTCAGGAGGACAGAAGC  539

seq1  CATGCTAGAAAGTTCTAAACCCTCCTTACCTGGCCTACAGACCTGGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAGAAAGTTCTAAACCCTCCTTACCTGGCCTACAGACCTGGCTCT  589

seq1  GTCCCTGCTCACCCCTCCCATCTCTAGAGAAGGTCTTCCATTGTGTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGCTCACCCCTCCCATCTCTAGAGAAGGTCTTCCATTGTGTGTTG  639

seq1  GATTCCAGTCCCTGGCCATCTCAGAAGCAACACTGTTTACTCCATCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAGTCCCTGGCCATCTCAGAAGCAACACTGTTTACTCCATCTCTT  689

seq1  GGGCTCCCTCTCCTACTATAGTCAATTCTGCTTTAAAATGTCACTACTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCCTCTCCTACTATAGTCAATTCTGCTTTAAAATGTCACTACTTA  739

seq1  TATGTACACCTTTCACTCCCTTACTCACTGTGCTGTCCCACTGTAGTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACACCTTTCACTCCCTTACTCACTGTGCTGTCCCACTGTAGTCTC  789

seq1  TGCTGTCTCCTCCCTACAGCCATCTAAAGCCACTTTGACCTCTGTTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTCCTCCCTACAGCCATCTAAAGCCACTTTGACCTCTGTTTCCT  839

seq1  TGCTTCTCACTTTCCAATCTGTCTCCTACCCACCTCAGCTCCCACTACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCACTTTCCAATCTGTCTCCTACCCACCTCAGCTCCCACTACTA  889

seq1  CTTCCCTCCAGCCCTTTCTGCCAGATCCAGTGGGGTCCCTGTTTGGGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCCAGCCCTTTCTGCCAGATCCAGTGGGGTCCCTGTTTGGGACA  939

seq1  CACACTCCTCTCCTATGTGGCATTTTAGGAGGGTATAACAAACTGACTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCCTCTCCTATGTGGCATTTTAGGAGGGTATAACAAACTGACTTG  989

seq1  GCTCTTCCTTCCTTAAGAATTC  1022
      ||||||||||||||||||||||
seq2  GCTCTTCCTTCCTTAAGAATTC  1011