BAC Information

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BAC

Clone NameB6Ng01-076E08
Chromosome1 (Build37)13 (Build37)
Map Location 139,131,321 - 139,131,73877,314,281 - 77,314,894
singlet/doubletsingletsinglet
Overlap geneLOC100042567
Upstream geneLOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3
Downstream geneLOC100043143, Ptprc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076E08.bB6Ng01-076E08.g
ACCDH892586DH892587
length788614
definitionDH892586|Mus musculus domesticus DNA, BAC clone: B6Ng01-076E08, 5' end.DH892587|Mus musculus domesticus DNA, BAC clone: B6Ng01-076E08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(139,131,321 - 139,131,738)(77,314,281 - 77,314,894)
sequence
gaattcaagacccatacctaaacataataaaagcaatatatggcaaacca
atagccaacatcaaaataaatgaagagaaagttgaagcaatcccactaaa
atcagggagtagacaaggctggtcactttctccctacctattgaatatag
tactgcaagtcctagccagaggaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaagaagtcataatatcactatttgcagatgatat
aacagtatacataagtgactcaaaaaattccaccagagaactcctaaacc
agataaacagcttcagtgaaatagctggataaaaaattaactcagacaaa
tcagtgtcctttctctacataaaggatgaacaggctgagaaagaaattag
ggaaagaacacccttcacaatagtcacaaaaaatataaaatacctttgtg
tgactctaactaaggaagtaaaagatttgtctctgaagaaagaaatcgaa
gatctcagaagatggaaagatctcccatgctcatggattggcaggatcaa
tatagtaaaaacggccatcttggtgatagcaatctacagactcaatgcaa
tccctatcaaaattccaactcaattcttcacagtgttataaagggcaatc
tgcaaattaatgcggaataagaaaaaacctaggattgcaaaaaatattct
caacaataaaagaacctcttttggagtcactatgcctgacctcaagctgt
actacagagcaattgtggtaagaactgcatggtactgg
gaattctaattttaaaatgtactaatgaaaatctggagccaggtatggtg
gatcaagcctttaatcgcagcacttgaaaggtagagaggcaagcatatct
ctgggttcaaatccagcctggcttacagagtagaagagccagagctaccc
agtaaacccctgcctcaaatcaccgtcaccaccctcaccccagaaaaatc
tgtgatactgcaatctttaaaaaaattaataacaacgtaataactggaat
ccacctagaggtacttatattttataacttcttaaaggtaatcagttgct
tgacgagatggatcagaaagtacctgtgtttagactacagcaaacatgtc
atatttgggcattgtagaaaacatctgcaattctagagtttagggtgtgg
ggaacagataaatagattctgggggtttacggccagcaaacatagtacaa
acgagaatcttaggtgcacagtagtaaagaccagatgaagacaattatgt
tcaaattttgagaacagactaaccaatatcttttacgaagttagtattaa
gaaacacatggctatacaagagacaatcctaaacccactctagatgattg
tgtgaataagacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_139131321_139131738
seq2: B6Ng01-076E08.b_476_829 (reverse)

seq1  CCAGTACCATGCAGTTTTTTTGTTTTTGTTTTTGTTTTTTTTTGTTGTTG  50
      |||||||||||||||| ||                               
seq2  CCAGTACCATGCAGTTCTT-------------------------------  19

seq1  GTGGTGGTTTTTTTAATCACAATTGCTCTGTAGTACAGCTTGAGGTTGGG  100
                     | |||||||||||||||||||||||||||||  ||
seq2  ---------------ACCACAATTGCTCTGTAGTACAGCTTGAGGTCAGG  54

seq1  GATGGTGATTCCACCAGAGGTTCTTTTATTGTTGAGAATAATTTTTGCTA  150
       || |||| ||||  ||||||||||||||||||||||||| ||||||| |
seq2  CATAGTGACTCCAAAAGAGGTTCTTTTATTGTTGAGAATATTTTTTGCAA  104

seq1  TCCTAGGTTTTTTGTTATTCCAGATGAATTTGCAAATTGCCCTTTCTAAC  200
      ||||||||||||| |||||||  || |||||||| |||||||||| ||||
seq2  TCCTAGGTTTTTTCTTATTCCGCATTAATTTGCAGATTGCCCTTTATAAC  154

seq1  TCTGTGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTATA  250
       |||||||||||||||||||||||||||| ||||||||||||| ||| ||
seq2  ACTGTGAAGAATTGAGTTGGAATTTTGATAGGGATTGCATTGAGTCTGTA  204

seq1  GATTGCTTTCAGCAAGATAGCCATTTTTACTATATTAATCTTGCCAATCC  300
      ||||||| ||| |||||| ||| ||||||||||||| ||| |||||||||
seq2  GATTGCTATCACCAAGATGGCCGTTTTTACTATATTGATCCTGCCAATCC  254

seq1  ATGAGCATGGGAGATCTTTCCATCTTCTGAGATCTACAATTTCTTTCTTC  350
      ||||||||||||||||||||||||||||||||||| | ||||||||||||
seq2  ATGAGCATGGGAGATCTTTCCATCTTCTGAGATCTTCGATTTCTTTCTTC  304

seq1  AGAGACTTGAAGTTCTTATCATACAGATCTTTCACTTCCTTGGTTAGAGT  400
      ||||                  ||| |||||| |||||||| ||||||||
seq2  AGAG------------------ACAAATCTTTTACTTCCTTAGTTAGAGT  336

seq1  CACACAAAGGTATTTTAT  418
      ||||||||||||||||||
seq2  CACACAAAGGTATTTTAT  354

seq1: chr13_77314281_77314894
seq2: B6Ng01-076E08.g_71_684 (reverse)

seq1  ATGTCTTCTTCACACAATCATCTAGTGTGGGTTTAGGATTGTCTCTTGTA  50
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGTCTTATTCACACAATCATCTAGAGTGGGTTTAGGATTGTCTCTTGTA  50

seq1  TAGCCATGTGTTTCTTACTACTAACTTCGTAAAAGATATTGGTTAGTCTG  100
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAGCCATGTGTTTCTTAATACTAACTTCGTAAAAGATATTGGTTAGTCTG  100

seq1  TTCTCAAAATTTGAACATAATTGTCTTCATCTGGTCTTTACTACTGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAATTTGAACATAATTGTCTTCATCTGGTCTTTACTACTGTGCA  150

seq1  CCTAAGATTCTCGTTTGTACTATGTTTGCTGGCCGTAAACCCCCAGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGATTCTCGTTTGTACTATGTTTGCTGGCCGTAAACCCCCAGAATC  200

seq1  TATTTATCTGTTCCCCACACCCTAAACTCTAGAATTGCAGATGTTTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCTGTTCCCCACACCCTAAACTCTAGAATTGCAGATGTTTTCTA  250

seq1  CAATGCCCAAATATGACATGTTTGCTGTAGTCTAAACACAGGTACTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCCAAATATGACATGTTTGCTGTAGTCTAAACACAGGTACTTTCT  300

seq1  GATCCATCTCGTCAAGCAACTGATTACCTTTAAGAAGTTATAAAATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATCTCGTCAAGCAACTGATTACCTTTAAGAAGTTATAAAATATAA  350

seq1  GTACCTCTAGGTGGATTCCAGTTATTACGTTGTTATTAATTTTTTTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCTAGGTGGATTCCAGTTATTACGTTGTTATTAATTTTTTTAAAG  400

seq1  ATTGCAGTATCACAGATTTTTCTGGGGTGAGGGTGGTGACGGTGATTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTATCACAGATTTTTCTGGGGTGAGGGTGGTGACGGTGATTTGA  450

seq1  GGCAGGGGTTTACTGGGTAGCTCTGGCTCTTCTACTCTGTAAGCCAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGGTTTACTGGGTAGCTCTGGCTCTTCTACTCTGTAAGCCAGGCT  500

seq1  GGATTTGAACCCAGAGATATGCTTGCCTCTCTACCTTTCAAGTGCTGCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGAACCCAGAGATATGCTTGCCTCTCTACCTTTCAAGTGCTGCGA  550

seq1  TTAAAGGCTTGATCCACCATACCTGGCTCCAGATTTTCATTAGTACATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCTTGATCCACCATACCTGGCTCCAGATTTTCATTAGTACATTT  600

seq1  TGAAATTAGAATTC  614
      | ||||||||||||
seq2  TAAAATTAGAATTC  614