BAC Information

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BAC

Clone NameB6Ng01-076F23
Chromosome17 (Build37)1 (Build37)
Map Location 24,953,918 - 24,954,07663,215,698 - 63,216,765
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSrrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6
Downstream gene4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076F23.bB6Ng01-076F23.g
ACCDH892656DH892657
length1511,059
definitionDH892656|Mus musculus domesticus DNA, BAC clone: B6Ng01-076F23, 5' end.DH892657|Mus musculus domesticus DNA, BAC clone: B6Ng01-076F23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,953,918 - 24,954,076)(63,215,698 - 63,216,765)
sequence
aaggttagcctggtctacatccaaggctacacagagaaatcctctataga
ataaaacaaaacaagacaacacaccaaaaaagagagagagagagagagaa
agagagagagagagagagagagagagagaggagaggagaggagaggagag
g
gaattcaatttattttatttgtttttttaccctattgttttgatggccag
ttcgcacaactggcacagcagcaagtaacttgattgaagtatttgttgat
ggtcagtctgtcatggtggaaccaggaaccactgttctgcaggtaattac
ttttatgactctgtgagttttctgatttttattttaaaaaattatttcct
tcatactgtttagtttcaatatagcaatgtgtcctgcaaggcaggcaagt
gaaggacagtacacagtttctctaagtttctccagaagtaaccaatttgc
tcatagacagacgctgctgtatgactgtgggttatcacagacctaaactt
ttttttttttcatttctagactgtggttagacatagacagacaggaaaac
actgaatgttagccaaaaaataaaaataaaaacaaacaaacaaacaaaca
aacaaataaataaataaaatcaaggcacaatggaaagtattttggctagc
tcgggggtggtagagatgtcagaagtaaaactaaatcatggccagctata
aggtgtaagttggtctgtgactcagatgagaagagaaggtcaggagtgac
gctttgacagggagcttttgtggactgtggacaaagcagataatggagaa
agactttaccatagactgtgaggtcttacctaatttcagagctcccaggt
ttggaacagagcaagagttcttgaggaacttacataggagtaggttaaga
taagtgggtaacggtgataaaataataaaagatgcctccatctgttgtgt
tcagtaagaacaagatccaaaggaaattattctaaagcagcattttgtct
tctaggcttgcgagaaggtcggcatgcaaatccctcgattctgttaccat
gaaaggttgtctgttgctggaattgcaggatgtgcctggtagagattgag
aaagctccaaaggtacatgatacctggattcctatcatgctgtgggagga
aaagactttaatcttgcagcaactatctaaatcatctgccataatccaat
atttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24953918_24954076
seq2: B6Ng01-076F23.b_56_199 (reverse)

seq1  CTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
      ||||| ||||| |||||   ||||| ||||||||||||||||||||||||
seq2  CTCTC-CTCTC-CTCTC---CTCTC-CTCTCTCTCTCTCTCTCTCTCTCT  44

seq1  CTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT-CTCTC-TGTTGAG  98
      |||||||||||||||||||||||||| | |   | |  | || ||||  |
seq2  CTCTCTTTCTCTCTCTCTCTCTCTCTTTTTTGGTGTGTTGTCTTGTTTTG  94

seq1  ACAGGGTTTTTCTGTCTCT---GTGTGTCCCTGGCTATCCTGGAACTGCT  145
             |||| | ||| |   |  | || |||  || ||| | |     
seq2  -------TTTTAT-TCTATAGAGGATTTCTCTGTGTAGCCTTGGA-----  131

seq1  TTGTAGACCAGGCT  159
       |||||||||||||
seq2  -TGTAGACCAGGCT  144

seq1: chr1_63215698_63216765
seq2: B6Ng01-076F23.g_66_1124 (reverse)

seq1  AAAAAAAATATTGGATTATAGCAGTATTGATTTTAGATAGTTTGCTGCAA  50
      ||||||||||||||||||| ||||   ||| ||||||||| |||||||||
seq2  AAAAAAAATATTGGATTATGGCAG--ATGA-TTTAGATAG-TTGCTGCAA  46

seq1  GATTTAAAGTCTTTTCCCTCCCACAGCATGATAGGGAATTCCAGGTATCA  100
      || |||||||||||| |||||||||||||||||||  | |||||||||||
seq2  GA-TTAAAGTCTTTT-CCTCCCACAGCATGATAGG--AATCCAGGTATCA  92

seq1  TGTACCTTTGGAGCTTTCTCAATCTCTACCAGGCACATCCTGCAATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTACCTTTGGAGCTTTCTCAATCTCTACCAGGCACATCCTGCAA-TTCC  141

seq1  AGCAACAGACAACCTTTCATGGTAACAGAATCGAGGGATTTGCATGCCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGACAACCTTTCATGGTAACAGAATCGAGGGATTTGCATGCCGA  191

seq1  CCTTCTCGCAAGCCTAGAAGACAAAATGCTGCTTTAGAATAATTTCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCGCAAGCCTAGAAGACAAAATGCTGCTTTAGAATAATTTCCTTT  241

seq1  GGATCTTGTTCTTACTGAACACAACAGATGGAGGCATCTTTTATTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTGTTCTTACTGAACACAACAGATGGAGGCATCTTTTATTATTTT  291

seq1  ATCACCGTTACCCACTTATCTTAACCTACTCCTATGTAAGTTCCTCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCGTTACCCACTTATCTTAACCTACTCCTATGTAAGTTCCTCAAGA  341

seq1  ACTCTTGCTCTGTTCCAAACCTGGGAGCTCTGAAATTAGGTAAGACCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGCTCTGTTCCAAACCTGGGAGCTCTGAAATTAGGTAAGACCTCA  391

seq1  CAGTCTATGGTAAAGTCTTTCTCCATTATCTGCTTTGTCCACAGTCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTATGGTAAAGTCTTTCTCCATTATCTGCTTTGTCCACAGTCCACA  441

seq1  AAAGCTCCCTGTCAAAGCGTCACTCCTGACCTTCTCTTCTCATCTGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCCCTGTCAAAGCGTCACTCCTGACCTTCTCTTCTCATCTGAGTC  491

seq1  ACAGACCAACTTACACCTTATAGCTGGCCATGATTTAGTTTTACTTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCAACTTACACCTTATAGCTGGCCATGATTTAGTTTTACTTCTGA  541

seq1  CATCTCTACCACCCCCGAGCTAGCCAAAATACTTTCCATTGTGCCTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTACCACCCCCGAGCTAGCCAAAATACTTTCCATTGTGCCTTGAT  591

seq1  TTTATTTATTTATTTGTTTGTTTGTTTGTTTGTTTGTTTTTATTTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTGTTTGTTTGTTTGTTTGTTTGTTTTTATTTTTATT  641

seq1  TTTTGGCTAACATTCAGTGTTTTCCTGTCTGTCTATGTCTAACCACAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCTAACATTCAGTGTTTTCCTGTCTGTCTATGTCTAACCACAGTC  691

seq1  TAGAAATGAAAAAAAAAAAAGTTTAGGTCTGTGATAACCCACAGTCATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGAAAAAAAAAAAAGTTTAGGTCTGTGATAACCCACAGTCATAC  741

seq1  AGCAGCGTCTGTCTATGAGCAAATTGGTTACTTCTGGAGAAACTTAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCGTCTGTCTATGAGCAAATTGGTTACTTCTGGAGAAACTTAGAGA  791

seq1  AACTGTGTACTGTCCTTCACTTGCCTGCCTTGCAGGACACATTGCTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTACTGTCCTTCACTTGCCTGCCTTGCAGGACACATTGCTATAT  841

seq1  TGAAACTAAACAGTATGAAGGAAATAATTTTTTAAAATAAAAATCAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAAACAGTATGAAGGAAATAATTTTTTAAAATAAAAATCAGAAA  891

seq1  ACTCACAGAGTCATAAAAGTAATTACCTGCAGAACAGTGGTTCCTGGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGAGTCATAAAAGTAATTACCTGCAGAACAGTGGTTCCTGGTTC  941

seq1  CACCATGACAGACTGACCATCAACAAATACTTCAATCAAGTTACTTGCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGACAGACTGACCATCAACAAATACTTCAATCAAGTTACTTGCTG  991

seq1  CTGTGCCAGTTGTGCGAACTGGCCATCAAAACAATAGGGTAAAAAAACAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCAGTTGTGCGAACTGGCCATCAAAACAATAGGGTAAAAAAACAA  1041

seq1  ATAAAATAAATTGAATTC  1068
      ||||||||||||||||||
seq2  ATAAAATAAATTGAATTC  1059