BAC Information

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BAC

Clone NameB6Ng01-076G03
Chromosome1 (Build37)
Map Location 189,055,447 - 189,174,910
singlet/doubletdoublet
Overlap geneGpatch2
Upstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17
Downstream geneEsrrg, 9330162B11Rik, Ush2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076G03.bB6Ng01-076G03.g
ACCDH892664DH892665
length1,025909
definitionDH892664|Mus musculus domesticus DNA, BAC clone: B6Ng01-076G03, 5' end.DH892665|Mus musculus domesticus DNA, BAC clone: B6Ng01-076G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(189,055,447 - 189,056,479)(189,174,001 - 189,174,910)
sequence
gaattctacaccagtaagggctacttcgtgagaccctgtctcaaaaacaa
accaatcaaacaagaagaagaaggcggcatctgcagaaagtaggttctac
agaaaggaagagaacatttattgtctgaattacagactcttgagtgattt
tatgggaagggaaaagcacagtaatattgctcatgttttcccccagacct
ccttggtgaggacagcaggtgagaggaccacacccctcactgctgtgcac
acgtcaccaggagcatgccagtagaactaccttggtaatagacttgagtt
ttgttaaagtacagatcttacccagcttatagatgttgatatgatcaaat
aaaatgataaactttaataagaagaaacttgttggcaagcctggcactct
ttagaaggccctgacttagggagaaatagcaacagttactgtgattttat
tgtatcttgtgttgctggagattttctgttatttaatttaccttcttctc
acttcatttcatttattaagaactgtatgagttcccgatttttatttatt
ttaaatgagggaactaatagagcagaagtgactttctccatgttacagga
caatggatttttaattcaccgatcaccatctcttgcccaagcttttaatg
actatttaatttactttttaacagtatcgtggtgtatcatataaaactga
agtcaactaacttcattgttttagcgtagttttcctttttctttttgaga
catgttctatgtttatataacacaagctggcctaaacattctccagctgc
gccaccctaaagcgtgggattaggcttgtgccaatccctggcatagtgct
gtgccaacggcagtgcagatataaggaggtcgtctctagtgagtccctgc
ttgcatttatagacttgctctgggacgtgtaatttacctcgcctatgaat
actgatacttgttttgcaaattgtaatttttacaaatatttttattagtt
ccctaagtaacagcctgtgatactc
gaattcaagggaattcagccttatacattctatttaggggagggaagaag
ggaggaaaggactacagcccacacctggttgacattaaagacacacaatg
cggagtcacactgctgacacagctatgctccgattctttggctaccgtag
ggagtggatgggaagggaagagaccctaactgactggcttgcagaacaac
agggtggactcatgaggaagtagaagaaatctcttaagactatttaaagg
tgataggaatgatagagttaaaatcatgaactccaatgatgtgggcacca
tgaactgatttgaactgataatgatttattaatctctattaaatgtaaac
cagtgggattcatgtcccgagcagacatctgatttacatgaacatttcct
attttaattgtgtttacttctcagctatggtcaggtatgccagggacgtc
acatcttgctgctctttataaggacttgaatgctgaagggtacctgtgga
cagctggcggtgggctggggcctgtcggttcttctgtaagagctggtcat
ccactctgaacagataaacactagtagaagatgaaccctgtgagtaaggg
agctttcttgtgtgaaagtagaactgtggtgtccccagcagctcttgagg
accttgctgcagaagctgcagcagagggtttcacattgtctagagggcta
gtgatgggaagtgcccagagagagcagtttttggaggcccagtgctcagc
acatggccgttcctgtgcatcctctagggcagggtaggacacagcagctg
atttcttcggagactggagccaagcgtcagtggcctcactgtttctcgct
ggcttgaaattgagcttatatttaaaatcccctctagggtttacaagacc
tcaagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189055447_189056479
seq2: B6Ng01-076G03.b_48_1072

seq1  GAATTCTACACCAGTAAGGGCTACTTCGTGAGACCCTGTCTCAAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACCAGTAAGGGCTACTTCGTGAGACCCTGTCTCAAAAACAA  50

seq1  ACCAATCAAACAAGAAGAAGAAGGCGGCATCTGCAGAAAGTAGGTTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCAAACAAGAAGAAGAAGGCGGCATCTGCAGAAAGTAGGTTCTAC  100

seq1  AGAAAGGAAGAGAACATTTATTGTCTGAATTACAGACTCTTGAGTGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAGAGAACATTTATTGTCTGAATTACAGACTCTTGAGTGATTT  150

seq1  TATGGGAAGGGAAAAGCACAGTAATATTGCTCATGTTTTCCCCCAGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAAGGGAAAAGCACAGTAATATTGCTCATGTTTTCCCCCAGACCT  200

seq1  CCTTGGTGAGGACAGCAGGTGAGAGGACCACACCCCTCACTGCTGTGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTGAGGACAGCAGGTGAGAGGACCACACCCCTCACTGCTGTGCAC  250

seq1  ACGTCACCAGGAGCATGCCAGTAGAACTACCTTGGTAATAGACTTGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCACCAGGAGCATGCCAGTAGAACTACCTTGGTAATAGACTTGAGTT  300

seq1  TTGTTAAAGTACAGATCTTACCCAGCTTATAGATGTTGATATGATCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAAGTACAGATCTTACCCAGCTTATAGATGTTGATATGATCAAAT  350

seq1  AAAATGATAAACTTTAATAAGAAGAAACTTGTTGGCAAGCCTGGCACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATAAACTTTAATAAGAAGAAACTTGTTGGCAAGCCTGGCACTCT  400

seq1  TTAGAAGGCCCTGACTTAGGGAGAAATAGCAACAGTTACTGTGATTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGCCCTGACTTAGGGAGAAATAGCAACAGTTACTGTGATTTTAT  450

seq1  TGTATCTTGTGTTGCTGGAGATTTTCTGTTATTTAATTTACCTTCTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTGTGTTGCTGGAGATTTTCTGTTATTTAATTTACCTTCTTCTC  500

seq1  ACTTCATTTCATTTATTAAGAACTGTATGAGTTCCCGATTTTTATTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTTCATTTATTAAGAACTGTATGAGTTCCCGATTTTTATTTATT  550

seq1  TTAAATGAGGGAACTAATAGAGCAGAAGTGACTTTCTCCATGTTACAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAGGGAACTAATAGAGCAGAAGTGACTTTCTCCATGTTACAGGA  600

seq1  CAATGGATTTTTAATTCACCGATCACCATCTCTTGCCCAAGCTTTTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGATTTTTAATTCACCGATCACCATCTCTTGCCCAAGCTTTTAATG  650

seq1  ACTATTTAATTTACTTTTTAACAGTATCGTGGTGTATCATATAAAACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTAATTTACTTTTTAACAGTATCGTGGTGTATCATATAAAACTGA  700

seq1  AGTCAACTAACTTCATTGTTTTAGCGTAGTTTTCCTTTTTCTTTTTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACTAACTTCATTGTTTTAGCGTAGTTTTCCTTTTTCTTTTTGAGA  750

seq1  CATGTTCTATGTTTATATAACACAAGCTGGCCTAAACATTCTCCAGCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTATGTTTATATAACACAAGCTGGCCTAAACATTCTCCAGCTGC  800

seq1  GCCACCCTAAAGCGTGGGATTAGGCTTGTGCCAATCCCTGGCATAGTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCTAAAGCGTGGGATTAGGCTTGTGCCAATCCCTGGCATAGTGCT  850

seq1  GTGCCAACGGCAGTGCAGATATAAGGAGGTCGTCTCTAGTGAGTCCCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAACGGCAGTGCAGATATAAGGAGGTCGTCTCTAGTGAGTCCCTGC  900

seq1  TTGCATTTAATAGACTTGCTCTGGGACGTTGTAATTTACCTCGCCTATGA  950
      |||||||| ||||||||||||||||||| |||||||||||||||||||| 
seq2  TTGCATTT-ATAGACTTGCTCTGGGACG-TGTAATTTACCTCGCCTATG-  947

seq1  AATACTGATACTTGTTTTGCAAATTGTAATTTTTAACAAAATATTTTTAT  1000
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  AATACTGATACTTGTTTTGCAAATTGTAATTTTTA--CAAATATTTTTAT  995

seq1  TAGTTCTCTAAGTTAAACAGTCTTGTGATACTC  1033
      |||||| ||||||  ||||| | ||||||||||
seq2  TAGTTCCCTAAGT--AACAG-CCTGTGATACTC  1025

seq1: chr1_189174001_189174910
seq2: B6Ng01-076G03.g_71_979 (reverse)

seq1  ATTTCTTGATGGTCTTGTAAAGCCCTAGGAGGGGACTTTTAAATATAAGC  50
      ||||||||| ||||||||||| ||||| ||||||| ||||||||||||||
seq2  ATTTCTTGA-GGTCTTGTAAA-CCCTA-GAGGGGA-TTTTAAATATAAGC  46

seq1  TCAATTTCAAGCCAGCGAGAAACAGTGAGGCCACTGAACGCTTGGCTCCA  100
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAATTTCAAGCCAGCGAGAAACAGTGAGGCCACTG-ACGCTTGGCTCCA  95

seq1  GTCTCCAGAGAAATCAGCTGCTGTGTCCTTACCCTGCCCTAGAGGATGCA  150
      ||||||  |||||||||||||||||||| |||||||||||||||||||||
seq2  GTCTCCGAAGAAATCAGCTGCTGTGTCC-TACCCTGCCCTAGAGGATGCA  144

seq1  CAGGAACGGCCATGTGCTGAGCACTGGGCCTCC-AAAACTGCTCTCTCTG  199
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGGAACGGCCATGTGCTGAGCACTGGGCCTCCAAAAACTGCTCTCTCTG  194

seq1  GGCACTTCCCATCACT-GCCCTCCAGACAATGTG-AACCCTCTGCTGCAG  247
      |||||||||||||||| |||||| |||||||||| |||||||||||||||
seq2  GGCACTTCCCATCACTAGCCCTCTAGACAATGTGAAACCCTCTGCTGCAG  244

seq1  CTTCTGCAGCAAGGTCCTCACGAGCTGCT-GGGACACCACAGTTCTACTT  296
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  CTTCTGCAGCAAGGTCCTCAAGAGCTGCTGGGGACACCACAGTTCTACTT  294

seq1  TCACACAAGAAAGCT-CCTTACTCACAGGGTTCATCTTCTACTAGTGTTT  345
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCACACAAGAAAGCTCCCTTACTCACAGGGTTCATCTTCTACTAGTGTTT  344

seq1  ATCTGTTCAGAGTGGATGACCAGCTCTTACAGAAGAACCGACAGGCCCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTCAGAGTGGATGACCAGCTCTTACAGAAGAACCGACAGGCCCCA  394

seq1  GCCCACCGCCAGCTGTCCACAGGTACCCTTCAGCATTCAAGTCCTTATAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCGCCAGCTGTCCACAGGTACCCTTCAGCATTCAAGTCCTTATAA  444

seq1  AGAGCAGCAAGATGTGACGTCCCTGGCATACCTGACCATAGCTGAGAAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCAAGATGTGACGTCCCTGGCATACCTGACCATAGCTGAGAAGT  494

seq1  AAACACAATTAAAATAGGAAATGTTCATGTAAATCAGATGTCTGCTCGGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAATTAAAATAGGAAATGTTCATGTAAATCAGATGTCTGCTCGGG  544

seq1  ACATGAATCCCACTGGTTTACATTTAATAGAGATTAATAAATCATTATCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATCCCACTGGTTTACATTTAATAGAGATTAATAAATCATTATCA  594

seq1  GTTCAAATCAGTTCATGGTGCCCACATCATTGGAGTTCATGATTTTAACT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATCAGTTCATGGTGCCCACATCATTGGAGTTCATGATTTTAACT  644

seq1  CTATCATTCCTATCACCTTTAAATAGTCTTAAGAGATTTCTTCTACTTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATTCCTATCACCTTTAAATAGTCTTAAGAGATTTCTTCTACTTCC  694

seq1  TCATGAGTCCACCCTGTTGTTCTGCAAGCCAGTCAGTTAGGGTCTCTTCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGTCCACCCTGTTGTTCTGCAAGCCAGTCAGTTAGGGTCTCTTCC  744

seq1  CTTCCCATCCACTCCCTACGGTAGCCAAAGAATCGGAGCATAGCTGTGTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCATCCACTCCCTACGGTAGCCAAAGAATCGGAGCATAGCTGTGTC  794

seq1  AGCAGTGTGACTCCGCATTGTGTGTCTTTAATGTCAACCAGGTGTGGGCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTGACTCCGCATTGTGTGTCTTTAATGTCAACCAGGTGTGGGCT  844

seq1  GTAGTCCTTTCCTCCCTTCTTCCCTCCCCTAAATAGAATGTATAAGGCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCCTTTCCTCCCTTCTTCCCTCCCCTAAATAGAATGTATAAGGCTG  894

seq1  AATTCCCTTGAATTC  910
      |||||||||||||||
seq2  AATTCCCTTGAATTC  909