BAC Information

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BAC

Clone NameB6Ng01-076H19
Chromosome10 (Build37)1 (Build37)
Map Location 54,018,571 - 54,019,089141,048,452 - 141,049,571
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
Downstream geneLOC100041898, LOC382460
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076H19.bB6Ng01-076H19.g
ACCDH892740DH892741
length9861,122
definitionDH892740|Mus musculus domesticus DNA, BAC clone: B6Ng01-076H19, 5' end.DH892741|Mus musculus domesticus DNA, BAC clone: B6Ng01-076H19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,018,571 - 54,019,089)(141,048,452 - 141,049,571)
sequence
gaattcctttcatgcactgtgctttgtgtctccttaacacttctttttct
tttctttttttttataattttgattttatatgttctttttttaaatttat
tacgtattttcctcaattacatttccaatgctatcccaaaagtcccccat
acccccccccttccctacctacccattcccatttttttggccctggcatt
cccctgtactggagcatataaagtttgcaagtccaatgggcctctctttc
cagtgatggccgactaggccatcttttgatacatatgtagctagagtcaa
gagctccggggtactggttagttcataatgttgttccatctatagggttg
caggtccctttagctccttgggtactttctctagctcctccattgggggc
cctgtgttccatcctatagctgactgtgagcatccacttctgtgtttgct
aggccccggcatagtctctcaagagagagctatatctgggtcctttcagc
aaaatcttgctagtgtatgcaatcgtgtcagcgtttggaagctgattatg
gggtggatccctagatatggcagtctctagatggtccatccttttgtctc
agctccaaaatttgtctttgtaactccttccatgggtgttttgttcccaa
ttctaagaaggggcacagtgtccacactttggtcttcattcttctagagt
ttcatgcgtttagcaaattgtgtcttatatcttgggtatcctaagttttg
ggctaatatccacttatcagtgagtacatattgtgtgagttcctttgtga
ttgggttacctcactcaggatgatgccctccaggtccaaccatttgccta
ggaatttcataaattcattctttttaataactgagtagtactccattgtg
tagatgtaccacattttctgtatccattcctctgttgaggggcatctagg
ttctttccagcttctggctattataaataaggctgc
gaattccttaagataaaaacatttaaatcacaggaatccttttcccaaat
atgtaagatgagagaattttcatatgctaattattaaattttccttgtat
aacaggataagatattcctattataatttactaacttctgttttttcaca
tttcatgttaatttctagaaatggatttttaagttgtatttcttaaggta
tacaaaatggcaagttggttatatttaggcaaattaaccaataaacaaat
tctccattgccttcacaggtgactttctgtgattcctaagagcacattag
acctacatgtagccgttttccaatatgagttacattatcattaaactgtg
atccttcccaactgcatctgatggaaaaattagtatagagctagacctga
cttggttttaaaaggaaattgcttttgacattcagtaaaataaaatatcc
ctttgttttgctttctgcattttaattgatatattgttaacatcacacat
tattttcctaggctgctataagaattatagataatataaataaaatactt
cctaaataataaatacaataggtagtctacagttggtagatatacacaca
tcttgagtgccaagtcttttgtaacaatggccctattagactttctcctc
ttgtgaaattcctgcccttagtcacttgacagcactgtggccacagaagt
agcaggcattcatcttcattctaaagtggggtcctgactgccgactttag
cgtatgatttgaaaggcaatatacatcttgtattatgaataaatctcttg
tctgtaacttttgtaagatggtatttgttttattgtcagctacaaataaa
aaaatgactctgaatggatttgtctcattccattctgagtttgtttatta
tcggacatggacccaactgtgaaaagaatgtagctttccagtttccatca
gacttgccaatgaaagacttgttttatttagttttcagaataataaatga
aattttgatcatttggaatataaggatgttatctttatttaacagaggaa
gtctatagtggtggatgctatggaaaaagaattaaaaatgtctatcccaa
tacctttgccttgtctttggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_54018571_54019089
seq2: B6Ng01-076H19.b_81_601

seq1  ACTTTTTTTTCTTTTC-TTTTTTTTCTGCACCTAACTTTA----TTTTTT  45
      |||| ||||||||||| |||||||| |     | | ||||    || |||
seq2  ACTTCTTTTTCTTTTCTTTTTTTTTATAATTTTGATTTTATATGTTCTTT  50

seq1  TAATATTTTTATTACATA-TTTCCTCAATTACATTTCCAATACTATCCCA  94
      |  ||  |||||||| || |||||||||||||||||||||| ||||||||
seq2  TTTTAAATTTATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCCA  100

seq1  AAAGTCCCCCATACCCTCCCCCCACTCCCTTACCCACCCATTCCCATCTT  144
      ||||||||||||||   |||||| || || |||| |||||||||||| ||
seq2  AAAGTCCCCCATAC---CCCCCCCCTTCCCTACCTACCCATTCCCAT-TT  146

seq1  TTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCC  194
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  TTTTGGCCCTGGCATTCCCCTGTACTGGAGCATATAAAGTTTGCAAGTCC  196

seq1  AATGGGCCTCTTTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACAT  244
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACAT  246

seq1  ATGCAGCTAGAGTCAAGAGCTCTGGAGTACTGGTTAGTTCATAATGTTGT  294
      ||| |||||||||||||||||| || ||||||||||||||||||||||||
seq2  ATGTAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGT  296

seq1  TCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAT  344
      |||| |||||||||||||| ||||||||||||||||||||||||||||| 
seq2  TCCATCTATAGGGTTGCAGGTCCCTTTAGCTCCTTGGGTACTTTCTCTAG  346

seq1  CTCCTCCATTGGGAGCCTTGTGATCCATCCACTAGCTGACTGTGAGCATC  394
      ||||||||||||| ||| |||| |||||||  ||||||||||||||||||
seq2  CTCCTCCATTGGGGGCCCTGTGTTCCATCCTATAGCTGACTGTGAGCATC  396

seq1  CACTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACAGCTATA  444
      |||||||||||||||||||||| ||||||||||| ||||||| |||||||
seq2  CACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCTCAAGAGAGAGCTATA  446

seq1  TCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAACAT  494
      ||||||||||||||||||||||||||||||||||||||| |||||| | |
seq2  TCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATCGTGTCAGCGT  496

seq1  TTGGAAGCTGATTATGGGGTGGATC  519
      |||||||||||||||||||||||||
seq2  TTGGAAGCTGATTATGGGGTGGATC  521

seq1: chr1_141048452_141049571
seq2: B6Ng01-076H19.g_68_1189

seq1  GAATTCCTTAAGATAAAAACATTTAAATCACAGGAATCCTTTTCCCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAGATAAAAACATTTAAATCACAGGAATCCTTTTCCCAAAT  50

seq1  ATGTAAGATGAGAGAATTTTCATATGCTAATTATTAAATTTTCCTTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGATGAGAGAATTTTCATATGCTAATTATTAAATTTTCCTTGTAT  100

seq1  AACAGGATAAGATATTCCTATTATAATTTACTAACTTCTGTTTTTTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGATAAGATATTCCTATTATAATTTACTAACTTCTGTTTTTTCACA  150

seq1  TTTCATGTTAATTTCTAGAAATGGATTTTTAAGTTGTATTTCTTAAGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTTAATTTCTAGAAATGGATTTTTAAGTTGTATTTCTTAAGGTA  200

seq1  TACAAAATGGCAAGTTGGTTATATTTAGGCAAATTAACCAATAAACAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATGGCAAGTTGGTTATATTTAGGCAAATTAACCAATAAACAAAT  250

seq1  TCTCCATTGCCTTCACAGGTGACTTTCTGTGATTCCTAAGAGCACATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTGCCTTCACAGGTGACTTTCTGTGATTCCTAAGAGCACATTAG  300

seq1  ACCTACATGTAGCCGTTTTCCAATATGAGTTACATTATCATTAAACTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACATGTAGCCGTTTTCCAATATGAGTTACATTATCATTAAACTGTG  350

seq1  ATCCTTCCCAACTGCATCTGATGGAAAAATTAGTATAGAGCTAGACCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCCCAACTGCATCTGATGGAAAAATTAGTATAGAGCTAGACCTGA  400

seq1  CTTGGTTTTAAAAGGAAATTGCTTTTGACATTCAGTAAAATAAAATATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTTAAAAGGAAATTGCTTTTGACATTCAGTAAAATAAAATATCC  450

seq1  CTTTGTTTTGCTTTCTGCATTTTAATTGATATATTGTTAACATCACACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTGCTTTCTGCATTTTAATTGATATATTGTTAACATCACACAT  500

seq1  TATTTTCCTAGGCTGCTATAAGAATTATAGATAATATAAATAAAATACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCTAGGCTGCTATAAGAATTATAGATAATATAAATAAAATACTT  550

seq1  CCTAAATAATAAATACAATAGGTAGTCTACAGTTGGTAGATATACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATAATAAATACAATAGGTAGTCTACAGTTGGTAGATATACACACA  600

seq1  TCTTGAGTGCCAAGTCTTTTGTAACAATGGCCCTATTAGACTTTCTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTGCCAAGTCTTTTGTAACAATGGCCCTATTAGACTTTCTCCTC  650

seq1  TTGTGAAATTCCTGCCCTTAGTCACTTGACAGCACTGTGGCCACAGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAATTCCTGCCCTTAGTCACTTGACAGCACTGTGGCCACAGAAGT  700

seq1  AGCAGGCATTCATCTTCATTCT-AAGTGGGGTCCTGACTGCCGACTTTAG  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCAGGCATTCATCTTCATTCTAAAGTGGGGTCCTGACTGCCGACTTTAG  750

seq1  CGTATGATTTGAAAGGCAATATACATCTTGTATTATGAATAAATCTCTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATGATTTGAAAGGCAATATACATCTTGTATTATGAATAAATCTCTTG  800

seq1  TCTGTAAC-TTTGTAAGATGGTATTTGTTTTATTGTCAGCTACAA--TAA  846
      |||||||| ||||||||||||||||||||||||||||||||||||   ||
seq2  TCTGTAACTTTTGTAAGATGGTATTTGTTTTATTGTCAGCTACAAATAAA  850

seq1  AAAATGACTCTGAATGGATTTGTCTCATTCCATTCTGAGTTTGTTTATTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACTCTGAATGGATTTGTCTCATTCCATTCTGAGTTTGTTTATTA  900

seq1  TCGGACATGGACCCAACTGTGAAAAGAATGTAGCTTTTCCAGTTTCCATC  946
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCGGACATGGACCCAACTGTGAAAAGAATGTAGC-TTTCCAGTTTCCATC  949

seq1  AAGACTTGCCAATGAAAGACTTTGTTTTTATTTAGTTTTCAGAATATTAA  996
       |||||||||||||||||||||   ||||||||||||||||||||| |||
seq2  -AGACTTGCCAATGAAAGACTT--GTTTTATTTAGTTTTCAGAATAATAA  996

seq1  ATGAAATTTTGATCATTTGAATTATAAGAATG-TATCTTTATTTAACAGA  1045
      ||||||||||||||||||| | |||||| ||| |||||||||||||||||
seq2  ATGAAATTTTGATCATTTGGAATATAAGGATGTTATCTTTATTTAACAGA  1046

seq1  AGGAAAGTCTATAGT-GTGGATGCTATGGAGAAGAATTTAAATATGTCTA  1094
        | ||||||||||| |||||||||||||| ||  | ||||| |||||||
seq2  --GGAAGTCTATAGTGGTGGATGCTATGGAAAAAGAATTAAAAATGTCTA  1094

seq1  TCCCATTA-CTTTG-CTTGTCTTTGGAA  1120
      ||||| || ||||| |||||||||||||
seq2  TCCCAATACCTTTGCCTTGTCTTTGGAA  1122