BAC Information

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BAC

Clone NameB6Ng01-076L03
Chromosome1 (Build37)
Map Location 47,026,944 - 47,169,863
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855, Slc39a10
Downstream geneEG227061, LOC666869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076L03.bB6Ng01-076L03.g
ACCDH892884DH892885
length7151,026
definitionDH892884|Mus musculus domesticus DNA, BAC clone: B6Ng01-076L03, 5' end.DH892885|Mus musculus domesticus DNA, BAC clone: B6Ng01-076L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,026,944 - 47,027,658)(47,168,829 - 47,169,863)
sequence
gaattctttgtgtttcaaagaagacctgccagctcatgaagatatagaat
tttcttctgcctcaaggatatggtcacatttttttaaaaaagagaaagaa
aagaaagagagagagagagagagagagagagaacgaggaggaggaagaag
aagaaggaggaggaggaagatgaggaggaaggatgatgatgataaaatat
cttaaatatttattgaaaagaatgaaatggctttagagagtttttgatgt
tagattcagatttcttttacaagagatgccacaatagagctggtaggtct
tcaagcactagagataggttgtgacagttgtaaaatatcttttatctgcc
tctttaaagatacagcaaagccgaggctgagcagtaattaacctaatcag
ctagttgaggctgagagcaggcacagaaacaaagctggctctggctctgg
ctctggctctggctctgtgctccctgtcttcgtctttatcctcttagtcc
atggagtgctgaatatatactgttctgccgaataacaaagctcatgtttg
cagaacttctgctggctagtatgttatcagtactgtcaccattttagaat
tttgcttgggctccccctgctggctggtatttttggtgggacattttttt
ttttcatttattctttttagttgtctttttactccttaatttttttgtga
ttataacatacttac
gaattcacttaaaataactgcccttcaagttcaacatgcatcagctaggc
tggagtaaggaaaaggaaaacaaaatatatctgtgactattgaatctgtt
ccaggaatttatagaaaataaactagtatttcctaactagtatcataaag
aaattttaaatttgacagcataaatggtacaaaggtgaaattatctttgc
aattcatcttccattttattcttttcctgtaatatttatttaacaccctc
atttactgtgttaggtttcatgccaagaaagcataacagatgtgtttctt
gtccttgaaaagctcagatcctaaaataggtttctacaaaaacaagaaaa
agtgtaacagagatgaaacacacagaaaatttatgactccttccaagttc
ctttaccatggtgggatagctagtatctgatatcgaagaggtctgtgtct
ccaagacagagctcagcattgggcagcctctctgtcctgctttcctccat
gtgcctcttaggagtagccttgggtagaagcaaatgtcctcactcttttc
tcagttctttgttcacacttacctctttcccatttccatcttcccacaca
tccccctactttcttcctttatttacatacaggtaaagaactccaacaat
ttgatgtagagtcaatctcatattttccttgtctttaggttcccaaaatt
tttatcaacttgtttctctataatcactctcagattctttcttcccacga
caaaatgtttttttttttttttaggtatttagctcatttacatttccaat
gctataccaaaagtccccctttacccacccacccccactcccctacccac
ccactccccccgttgggcctggcgttcccctgtaccgggcacacaaagtc
tgcgtgtccaatgggcctctctttcagtgatggccgactaggccactttt
gatacatatgcagctagagtcagagctcaggggtactggttagtcataat
gtgtcacctaaggttgaagatccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_47026944_47027658
seq2: B6Ng01-076L03.b_47_761

seq1  GAATTCTTTGTGTTTCAAAGAAGACCTGCCAGCTCATGAAGATATAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGTTTCAAAGAAGACCTGCCAGCTCATGAAGATATAGAAT  50

seq1  TTTCTTCTGCCTCAAGGATATGGTCACATTTTTTTAAAAAAGAGAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGCCTCAAGGATATGGTCACATTTTTTTAAAAAAGAGAAAGAA  100

seq1  AAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAACGAGGAGGAGGAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAACGAGGAGGAGGAAGAAG  150

seq1  AAGAAGGAGGAGGAGGAAGATGAGGAGGAAGGATGATGATGATAAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAGGAGGAGGAAGATGAGGAGGAAGGATGATGATGATAAAATAT  200

seq1  CTTAAATATTTATTGAAAAGAATGAAATGGCTTTAGAGAGTTTTTGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATATTTATTGAAAAGAATGAAATGGCTTTAGAGAGTTTTTGATGT  250

seq1  TAGATTCAGATTTCTTTTACAAGAGATGCCACAATAGAGCTGGTAGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCAGATTTCTTTTACAAGAGATGCCACAATAGAGCTGGTAGGTCT  300

seq1  TCAAGCACTAGAGATAGGTTGTGACAGTTGTAAAATATCTTTTATCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCACTAGAGATAGGTTGTGACAGTTGTAAAATATCTTTTATCTGCC  350

seq1  TCTTTAAAGATACAGCAAAGCCGAGGCTGAGCAGTAATTAACCTAATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAGATACAGCAAAGCCGAGGCTGAGCAGTAATTAACCTAATCAG  400

seq1  CTAGTTGAGGCAGAGAGCAGGCACAGAAACAAAGCTGGCTCTGGCTCTGG  450
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGAGGCTGAGAGCAGGCACAGAAACAAAGCTGGCTCTGGCTCTGG  450

seq1  CTCTGGCTCTGGCTCTGTGCTCCCTGTCTTCGTCTTTATCCTCTTAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTCTGGCTCTGTGCTCCCTGTCTTCGTCTTTATCCTCTTAGTCC  500

seq1  ATGGAGTGCTGAATATATACTGTTCTGCCGAATAACAAAGCTCATGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTGCTGAATATATACTGTTCTGCCGAATAACAAAGCTCATGTTTG  550

seq1  CAGAACTTCTGCTGGCTAGTATGTTATCAGTACTGTCACCATTTTAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTTCTGCTGGCTAGTATGTTATCAGTACTGTCACCATTTTAGAAT  600

seq1  TTTGCTTGGGCTCCCCCTGCTGGCTGGTA-TTTTGGTGGGACATTTTTTT  649
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTGCTTGGGCTCCCCCTGCTGGCTGGTATTTTTGGTGGGACATTTTTTT  650

seq1  TTTTCATTTATTCTTTTTAGTTTGTCTTTTAACTCCTTAATTTTTTTGTG  699
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  TTTTCATTTATTCTTTTTAG-TTGTCTTTTTACTCCTTAATTTTTTTGTG  699

seq1  ATTATAACATACTTAC  715
      ||||||||||||||||
seq2  ATTATAACATACTTAC  715

seq1: chr1_47168829_47169863
seq2: B6Ng01-076L03.g_69_1094 (reverse)

seq1  AAGGGATCTTCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTAC  50
      |||||||||||||||   ||||||  || |||||||| ||||||||||||
seq2  AAGGGATCTTCAACC--TTAGGTG--AC-ACATTATG-ACTAACCAGTAC  44

seq1  CCCTGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCG  100
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  CCCTGAGCTC-TGACTCTAGCTGCATATGTATCAAAAG-TGGCCTAGTCG  92

seq1  GCCATCACTGGAAAGAGAGGCCCATTGGACACGCAGACTTTGTGTGCCCC  150
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  GCCATCACT-GAAAGAGAGGCCCATTGGACACGCAGACTTTGTGTG-CCC  140

seq1  GGTACAGGGGAACGCCAGGGCCAAACGGGGGGAGTGGGTGGGTAGGGGAG  200
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  GGTACAGGGGAACGCCA-GGCCCAACGGGGGGAGTGGGTGGGTAGGGGAG  189

seq1  TGGGGGTGGGTGGGT-AAGGGGGACTTTTGGTATAGCATTGGAAATGTAA  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGGGGTGGGTGGGTAAAGGGGGACTTTTGGTATAGCATTGGAAATGTAA  239

seq1  ATGAGCTAAATACCT-AAAAAAAAAAAAAACATTTTGTCGTGGGAAGAAA  298
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGAGCTAAATACCTAAAAAAAAAAAAAAACATTTTGTCGTGGGAAGAAA  289

seq1  GAATCTGAGAGTGATTATAGAGAAACAAGTTGATAAAAATTTTGGGAACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGAGAGTGATTATAGAGAAACAAGTTGATAAAAATTTTGGGAACC  339

seq1  TAAAGACAAGGAAAATATGAGATTGACTCTACATCAAATTGTTGGAGTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAAGGAAAATATGAGATTGACTCTACATCAAATTGTTGGAGTTC  389

seq1  TTTACCTGTATGTAAATAAAGGAAGAAAGTAGGGGGATGTGTGGGAAGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGTATGTAAATAAAGGAAGAAAGTAGGGGGATGTGTGGGAAGAT  439

seq1  GGAAATGGGAAAGAGGTAAGTGTGAACAAAGAACTGAGAAAAGAGTGAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGGAAAGAGGTAAGTGTGAACAAAGAACTGAGAAAAGAGTGAGG  489

seq1  ACATTTGCTTCTACCCAAGGCTACTCCTAAGAGGCACATGGAGGAAAGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCTTCTACCCAAGGCTACTCCTAAGAGGCACATGGAGGAAAGCA  539

seq1  GGACAGAGAGGCTGCCCAATGCTGAGCTCTGTCTTGGAGACACAGACCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAGAGGCTGCCCAATGCTGAGCTCTGTCTTGGAGACACAGACCTC  589

seq1  TTCGATATCAGATACTAGCTATCCCACCATGGTAAAGGAACTTGGAAGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATATCAGATACTAGCTATCCCACCATGGTAAAGGAACTTGGAAGGA  639

seq1  GTCATAAATTTTCTGTGTGTTTCATCTCTGTTACACTTTTTCTTGTTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAATTTTCTGTGTGTTTCATCTCTGTTACACTTTTTCTTGTTTTT  689

seq1  GTAGAAACCTATTTTAGGATCTGAGCTTTTCAAGGACAAGAAACACATCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAACCTATTTTAGGATCTGAGCTTTTCAAGGACAAGAAACACATCT  739

seq1  GTTATGCTTTCTTGGCATGAAACCTAACACAGTAAATGAGGGTGTTAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCTTTCTTGGCATGAAACCTAACACAGTAAATGAGGGTGTTAAAT  789

seq1  AAATATTACAGGAAAAGAATAAAATGGAAGATGAATTGCAAAGATAATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTACAGGAAAAGAATAAAATGGAAGATGAATTGCAAAGATAATTT  839

seq1  CACCTTTGTACCATTTATGCTGTCAAATTTAAAATTTCTTTATGATACTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTGTACCATTTATGCTGTCAAATTTAAAATTTCTTTATGATACTA  889

seq1  GTTAGGAAATACTAGTTTATTTTCTATAAATTCCTGGAACAGATTCAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAAATACTAGTTTATTTTCTATAAATTCCTGGAACAGATTCAATA  939

seq1  GTCACAGATATATTTTGTTTTCCTTTTCCTTACTCCAGCCTAGCTGATGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGATATATTTTGTTTTCCTTTTCCTTACTCCAGCCTAGCTGATGC  989

seq1  ATGTTGAACTTGAAGGGCAGTTATTTTAAGTGAATTC  1035
      |||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAACTTGAAGGGCAGTTATTTTAAGTGAATTC  1026