BAC Information

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BAC

Clone NameB6Ng01-077A22
Chromosome1 (Build37)
Map Location 129,578,079 - 129,712,880
singlet/doubletdoublet
Overlap geneAcmsd, Ccnt2, Ysk4
Upstream geneE030049G20Rik, LOC383559, Mgat5, LOC667090, Tmem163
Downstream geneRab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077A22.bB6Ng01-077A22.g
ACCDH893131DH893132
length757688
definitionDH893131|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A22, 5' end.DH893132|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,712,157 - 129,712,880)(129,578,079 - 129,578,765)
sequence
gaattctacactagcttgggctccttggcaaagtcctgtctcaaaataat
gaagataaaaaccaaaaagtagggcctgccttgtttttaattgaaaaaag
ctaccaccttttttttttttttttttaaagctagatattagctgggcagt
ggtggcacatacttttaatcccagcattcaggaggaggaggcaggtggat
gtctgagttctaggccagcctgggtctacagagccagggttacagaaaaa
ccatcttgaaaaaaacaaaacaaaacaaccccccccaacacacacatccc
taaaagctagatatttaatccttccaatgagttaggtttttgtttttgtt
tttaaagaacttaaaaattgagacaaggtctcatgtagcccacaatggtc
tcaagttctccaattccatgcttagccaaggataatcttgaatttctgat
ctgcttggttccacctaaatactatattacaggggagtacaaccaagtcc
aaagtatgaagtactaggaccttgtgtatgctagacaagcactttaaccc
acagtcccagtctataggtgttgttattaattcccatttcacaggcgagc
aaagtttgggccactagcttcaggttatagttaaaaactggacttggggc
tcaagctagtccattggactgtcaataattgtgccatctttattttaatt
agtgtgtgtgtatgtgtatgtgtgggggagaaagatgacatttttttttt
caacctc
gaattctctatgtagctgaggataactttgaccttgcatttctacctcta
cctttaaagtcctgatattacagacatacccacaatgcccagctcagggt
atactgaagatggaacctgggacttcatgcccagggccttttgcatacta
gacacgtgtgctaccatcggagccagctaaccacccagactatcttttta
gttcttgtagcaacacaagcaacactggaaagcacgtagcactccagggc
tgggtggggtgaggagctagttgtgcagccctgaagtgtttatgctggtg
ctgcatggacctcagcagcatccccagggaggccctacagtctccggaaa
catggcaggcatgaatgcagacaaacagtgccagcactggcaagtgctac
atttataaactctttctcataaaaaaaggaaaagatacaaactaggtcat
gactacagaacacttggatatgacatgtttatgagacctgtcatttattt
ttagaggtttttgtatcaaaacattcagctaccggtcctccacaccctgt
gccctgtactggtgtattcagttcaccgaaagcaacagtacatatttttt
aaattatacatccactaaaaactgcccttctctctctcccccccctctct
ccctctctctctctctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_129712157_129712880
seq2: B6Ng01-077A22.b_45_768 (reverse)

seq1  CACACACACACATACACACACACTAATTAAAATAAAGATGGCACAATTAT  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACACATACACACACACTAATTAAAATAAAGATGGCACAATTAT  50

seq1  TGACAGTCCAATGGACTAGCTTGAGCCCCAAGTCCAGTTTTTAACTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTCCAATGGACTAGCTTGAGCCCCAAGTCCAGTTTTTAACTATAA  100

seq1  CCTGAAGCTAGTGGCCCAAACTTTGCTCGCCTGTGAAATGGGAATTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCTAGTGGCCCAAACTTTGCTCGCCTGTGAAATGGGAATTAATA  150

seq1  ACAACACCTATAGACTGGGACTGTGGGTTAAAGTGCTTGTCTAGCATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACCTATAGACTGGGACTGTGGGTTAAAGTGCTTGTCTAGCATACA  200

seq1  CAAGGTCCTAGTACTTCATACTTTGGACTTGGTTGTACTCCCCTGTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCCTAGTACTTCATACTTTGGACTTGGTTGTACTCCCCTGTAATA  250

seq1  TAGTATTTAGGTGGAACCAAGCAGATCAGAAATTCAAGATTATCCTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTAGGTGGAACCAAGCAGATCAGAAATTCAAGATTATCCTTGGC  300

seq1  TAAGCATGGAATTGGAGAACTTGAGACCATTGTGGGCTACATGAGACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATGGAATTGGAGAACTTGAGACCATTGTGGGCTACATGAGACCTT  350

seq1  GTCTCAATTTTTAAGTTCTTTAAAAACAAAAACAAAAACCTAACTCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAATTTTTAAGTTCTTTAAAAACAAAAACAAAAACCTAACTCATTG  400

seq1  GAAGGATTAAATATCTAGCTTTTAGGGATGTGTGTGTTGGGGGGGGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATTAAATATCTAGCTTTTAGGGATGTGTGTGTTGGGGGGGGTTGT  450

seq1  TTTGTTTTGTTTTTTTCAAGATGGTTTTTCTGTAACCCTGGCTCTGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTTTTCAAGATGGTTTTTCTGTAACCCTGGCTCTGTAGA  500

seq1  CCCAGGCTGGCCTAGAACTCAGACATCCACCTGCCTCCTCCTCCTGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTGGCCTAGAACTCAGACATCCACCTGCCTCCTCCTCCTGAATG  550

seq1  CTGGGATTAAAAGTATGTGCCACCACTGCCCAGCTAATATCTAGCTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAAGTATGTGCCACCACTGCCCAGCTAATATCTAGCTTTAA  600

seq1  AAAAAAAAAAAAAAAAGGTGGTAGCTTTTTTCAATTAAAAACAAGGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAGGTGGTAGCTTTTTTCAATTAAAAACAAGGCAGG  650

seq1  CCCTACTTTTTGGTTTTTATCTTCATTATTTTGAGACAGGACTTTGCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTTTTTGGTTTTTATCTTCATTATTTTGAGACAGGACTTTGCCAA  700

seq1  GGAGCCCAAGCTAGTGTAGAATTC  724
      ||||||||||||||||||||||||
seq2  GGAGCCCAAGCTAGTGTAGAATTC  724

seq1: chr1_129578079_129578765
seq2: B6Ng01-077A22.g_67_754

seq1  GAATTCTCTATGTAGCTGAGGATAACTTTGACCTTGCATTTCTACCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGTAGCTGAGGATAACTTTGACCTTGCATTTCTACCTCTA  50

seq1  CCTTTAAAGTCCTGATATTACAGACATACCCACAATGCCCAGCTCAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAAGTCCTGATATTACAGACATACCCACAATGCCCAGCTCAGGGT  100

seq1  ATACTGAAGATGGAACCTGGGACTTCATGCCCAGGGCCTTTTGCATACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAAGATGGAACCTGGGACTTCATGCCCAGGGCCTTTTGCATACTA  150

seq1  GACACGTGTGCTACCATCGGAGCCAGCTAACCACCCAGACTATCTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGTGTGCTACCATCGGAGCCAGCTAACCACCCAGACTATCTTTTTA  200

seq1  GTTCTTGTAGCAACACAAGCAACACTGGAAAGCACGTAGCACTCCAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTAGCAACACAAGCAACACTGGAAAGCACGTAGCACTCCAGGGC  250

seq1  TGGGTGGGGTGAGGAGCTAGTTGTGCAGCCCTGAAGTGTTTATGCTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGGTGAGGAGCTAGTTGTGCAGCCCTGAAGTGTTTATGCTGGTG  300

seq1  CTGCATGGACCTCAGCAGCATCCCCAGGGAGGCCCTACAGTCTCCGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGGACCTCAGCAGCATCCCCAGGGAGGCCCTACAGTCTCCGGAAA  350

seq1  CATGGCAGGCATGAATGCAGACAAACAGTGCCAGCACTGGCAAGTGCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGGCATGAATGCAGACAAACAGTGCCAGCACTGGCAAGTGCTAC  400

seq1  ATTTATAAACTCTTTCTCATAAAAAAAGGAAAAGATACAAACTAGGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAACTCTTTCTCATAAAAAAAGGAAAAGATACAAACTAGGTCAT  450

seq1  GACTACAGAACACTTGGATATGACATGTTTATGAGACCTGTCATTTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGAACACTTGGATATGACATGTTTATGAGACCTGTCATTTATTT  500

seq1  TTAGAGGTTTTTGTATCAAAACATTCAGCTACCGGTCCTCCACACCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGTTTTTGTATCAAAACATTCAGCTACCGGTCCTCCACACCCTGT  550

seq1  GCCCTGTACTGGTGTATTCAGTTCACCGAAAGCAACAGTACATATTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTACTGGTGTATTCAGTTCACCGAAAGCAACAGTACATATTTTTT  600

seq1  AAATTATACATCCACT-AAAACTGCCCTTCTCTCTCTCCCCCCCCTCTCT  649
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAATTATACATCCACTAAAAACTGCCCTTCTCTCTCTCCCCCCCCTCTCT  650

seq1  CCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  687
      ||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  688