BAC Information

Click to search

BAC

Clone NameB6Ng01-077F12
Chromosome1 (Build37)
Map Location 75,587,261 - 75,588,408
singlet/doubletsinglet
Overlap geneLOC383531
Upstream geneUsp37, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077F12.bB6Ng01-077F12.g
ACCDH893346DH893347
length1,1411,140
definitionDH893346|Mus musculus domesticus DNA, BAC clone: B6Ng01-077F12, 5' end.DH893347|Mus musculus domesticus DNA, BAC clone: B6Ng01-077F12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccaaacaggaaaaccaaagcaaaggtgagtgtgtgggtggcaa
cagcttctgctctgcccagtaaatacaggttagcagtcgcctcgcttcct
ttcttgctactgtgataggattccctgagtgttgttagaattactactgt
tctttttttttgtttttgtttttgtttttgtttttccgagacagggtttt
tctgtgtagccctggctgtcctggaactcactctgtagaccaggctggcc
tcgaactcagaaatctgcctgcctctgcctcccaagtgctgggattaaag
gcgtgcgccaccacgcccggctcggaattactactgttctaataaaccgg
tatcaaaaacacacaatcaagatattttatttacaagccaaatgcctaga
ttgggcagatctagggccatcctaacgtactcaccagctgttaaagcctc
ttgctacatgctctttctcctggccatgcagttctggtccgcggtgtctt
cctcttccccatccatcctcccctctctcctccacctgcatcctcctctt
gaacctccagtctcacctctctccctccactgcccaatcacaggctttta
ttgacaaattaagttggggagaaggttcggggtgctgggattcccacggc
ctgcttcctcactctggttatgcactggatccgtatggaattcttcccct
cactgattctcggacccctggcttctgcccgtggacccctcagaggtctg
tgaactctagcttacacactcctgttgtgtgctgcttcacagactgagag
atgggcttcggaattaggtggatctgagaatcacttgatgtactagttag
ttagtcctagaggatcacttgatgtactagttagtcttagaggatcactt
gatgtactagttagtcctaggggatcacttgatgtactagttagtcttag
aggatcacttgatgtactagtagtcctagaggatcacttgatgtactagt
ggtcctagaggatcacttgatgtactagttagtcctagaggaagttaaca
gtgttagctttcaacctggaggaaaagcagagctgcctatttaacagagt
aaagctgacctggcaccacggtctccctacatcctcagtcc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccaa
tggagagctagagaagtacccaagagctaaagggatctcaccctatagtg
acacattatgactacagtaccctgagctcttgactctagctgcatttgta
tcaaaagatgctagtcgtcattactgaagagagcccattgaccgcgaact
ttgtgtgccgtaaggacgccaggcaaagagaaatatagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_75587261_75588408
seq2: B6Ng01-077F12.b_45_1185

seq1  GAATTCTCCAAACAGGAAAACCAAAGCAAAGGTGAGTGTGTGGGTGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAACAGGAAAACCAAAGCAAAGGTGAGTGTGTGGGTGGCAA  50

seq1  CAGCTTCTGCTCTGCCCAGTAAATACAGGTTAGCAGTCGCCTCGCTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTGCTCTGCCCAGTAAATACAGGTTAGCAGTCGCCTCGCTTCCT  100

seq1  TTCTTGCTACTGTGATAGGATTCCCTGAGTGTTGTTAGAATTACTACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTACTGTGATAGGATTCCCTGAGTGTTGTTAGAATTACTACTGT  150

seq1  TCTTTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTCCGAGACAGGGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTCCGAGACAGGGTTTT  200

seq1  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC  250

seq1  TCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG  300

seq1  GCGTGCGCCACCACGCCCGGCTCGGAATTACTACTGTTCTAATAAACCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGCCACCACGCCCGGCTCGGAATTACTACTGTTCTAATAAACCGG  350

seq1  TATCAAAAACACACAATCAAGATATTTTATTTACAAGCCAAATGCCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAAACACACAATCAAGATATTTTATTTACAAGCCAAATGCCTAGA  400

seq1  TTGGGCAGATCTAGGGCCATCCTAACGTACTCACCAGCTGTTAAAGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAGATCTAGGGCCATCCTAACGTACTCACCAGCTGTTAAAGCCTC  450

seq1  TTGCTACATGCTCTTTCTCCTGGCCATGCAGTTCTGGTCCGCGGTGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACATGCTCTTTCTCCTGGCCATGCAGTTCTGGTCCGCGGTGTCTT  500

seq1  CCTCTTCCCCATCCATCCTCCCCTCTCTCCTCCACCTGCATCCTCCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCCCATCCATCCTCCCCTCTCTCCTCCACCTGCATCCTCCTCTT  550

seq1  GAACCTCCAGTCTCACCTCTCTCCCTCCACTGCCCAATCACAGGCTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCCAGTCTCACCTCTCTCCCTCCACTGCCCAATCACAGGCTTTTA  600

seq1  TTGACAAATTAAGTTGGGGAGAAGGTTCGGGGTGCTGGGATTCCCACGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAATTAAGTTGGGGAGAAGGTTCGGGGTGCTGGGATTCCCACGGC  650

seq1  CTGCTTCCTCACTCTGGTTATGCACTGGATCCGTATGGAATTCTTCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTCACTCTGGTTATGCACTGGATCCGTATGGAATTCTTCCCCT  700

seq1  CACTGATTCTCGGACCCCTGGCTTCTGCCCGTGGACCCCTCAGAGGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATTCTCGGACCCCTGGCTTCTGCCCGTGGACCCCTCAGAGGTCTG  750

seq1  TGAACTCTAGCTTACACACTCCTGTTGTGTGCTGCTTCACAGACTGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTAGCTTACACACTCCTGTTGTGTGCTGCTTCACAGACTGAGAG  800

seq1  ATGGGCTTCGGAATTAGGTGGATCTGAGAATCACTTGATGTACTAGTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTTCGGAATTAGGTGGATCTGAGAATCACTTGATGTACTAGTTAG  850

seq1  TTAGTCCTAGAGGATCACTTGATGTACTAGTTAGTCTTAGAGGATCACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCTAGAGGATCACTTGATGTACTAGTTAGTCTTAGAGGATCACTT  900

seq1  GATGTACTAGTTAGTCCTAGGGGATCACTTGATGTACTAGTTAGTCTTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACTAGTTAGTCCTAGGGGATCACTTGATGTACTAGTTAGTCTTAG  950

seq1  AGGATCACTTGATGTACTAGTTAGTCCTAGAGGATCACTTGATGTACTAG  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGATCACTTGATGTACTAG-TAGTCCTAGAGGATCACTTGATGTACTAG  999

seq1  TTGGTCCTAGAGGATCACTTGATGTACTAGTTAGTCCTAGAGGAAGTAAC  1050
       |||||||||||||||||||||||||||||||||||||||||||||| | 
seq2  -TGGTCCTAGAGGATCACTTGATGTACTAGTTAGTCCTAGAGGAAGTTAA  1048

seq1  AAGTGTTAGCTTTCAAACCCTGGAGGAAAAGCAGAGCTGCCTATTTAACA  1100
       |||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  CAGTGTTAGCTTTCAA--CCTGGAGGAAAAGCAGAGCTGCCTATTTAACA  1096

seq1  GAGTAAAGCTGACCCTGGCCACCACGTTCTCCCTACATCCCTCAGTCC  1148
      |||||||||||| ||||| ||||||| ||||||||||| |||||||||
seq2  GAGTAAAGCTGA-CCTGG-CACCACGGTCTCCCTACAT-CCTCAGTCC  1141