BAC Information

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BAC

Clone NameB6Ng01-077G09
Chromosome1 (Build37)
Map Location 52,142,781 - 52,163,761
singlet/doubletdoublet
Overlap geneStat4, LOC100042634
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014
Downstream geneStat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077G09.bB6Ng01-077G09.g
ACCDH893384DH893385
length1,0411,141
definitionDH893384|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G09, 5' end.DH893385|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,142,781 - 52,143,828)(52,162,614 - 52,163,761)
sequence
gaattctttcccatgaaggtttttctaaatttcctgaaccattcttataa
aaaaacactataaacaaaagcccattacgcacatctcggtggaattttga
acacagttgtaatatttcattcagcctgacatccctgaatgttattattt
acaaatctgaacaaaccaagcacaattatttttcttaagcaaaacatatc
cgatgggaatacatccaaatagttcaactcttgcagtacattgtcatctt
taccaacgtgaaataaaaattcgtactaggatttccttagagacagagct
ataagtaaatcatcctctatagaaaacccaagcactgtcttattagtaac
gtctacttatattgctttgaatttatgtcctcttattttccagttgataa
caaaatcatacagccatacaatgactttgtttatttttattttttcaagt
ttgttaaagcggggctattgtgtttaagatattctttgagctccccctat
tgatagaatcttagtatggtgtcaaggcacatttagaacaagccactggc
tcaaacactgttttgtgtgcttaagacacagttgactggtatgaaacatg
tcgagaaagatgatccattcattcgtcaggggtttgatcagtagaaatga
ccacagaaaggaaagagaggagaagaatagttggtatataaggtggaggt
gttcataaactcacagggcgaatgattgtagtaatacactttaggaaggt
gggaagcaaagataccatgaccttattttcaagcttcaaaggttgctatt
gcttatctatgagcacctgcagcaagtgggcatactctactgagaattca
tggaacagtagctcctggtatatactctggcgttacactgctaaatgggt
agcatacgtatcaagtcaacttcactcaagtttgcaccaggcagttaatg
aacctgatgggctgtactgctcaaccttcttgatccatccctttgggatc
ttcagatctgggaggtggaaccctccccctcacacatggcc
gaattcatctaaaaatggaaacggaaatgattgttaaggaaaccgtcttg
caaataaattgctgttttgatagagtaaacactcttgtctactaaacaat
ctgtaatctttctaccaattaactaaggattcattaaagtaattagggct
gatcagcccgaaataaaaggcataatttaagtagattaaaaactgtgtta
agaagtccactcacagggcaggcaaagtggctcggcaagaaaaaacacaa
gacacaaacacacacacacacactaattaaaaaaattcatcagactaaaa
ataatatgaaaatggatgcaaaatgtagcaaaagttcagttatgtataaa
tggcttggtgagttaaagttagccagccctgggttaagccatccaaggca
ggcttggactttccatctctggagtcttgaagaactgaataccattggac
ctgtggccagatgtcactctcctgggcatctggacccctccaagggattc
tgatgaatgttcaccttatgtgaattgggggtgtcgaaccctttaacagc
attgggggatggaaacaaatagaacacatcccaagtaacatatattataa
tgttacaatgtattatatgtgttatatatgttctagtgcgttataatgta
tatatgacatatacctaaatattggattgtgactcagatctaaaaaaaaa
gcaaaaaacactgtgatgctattgttcttcatgttctaaatggaaaggcc
acaacaatgcaacaatcaagaaaagttaaaacttgtgaacttcttaagtt
aactaccaaaatagacttgtaacccctggctatttgtgtcctttgataat
atggaaagagctaaggagtgtgtgactcatggctgcccaggaggagaagt
acaggggtctttgaccctctggttttgtggtaaacacattaaagccattc
tagtaagctaaggtgtttgctctcagtatctgcacactcagcagcatgca
ctgagcaggcaagcttttgagttcttgctggtaacacgctctcctcccgc
ctgcaccggctgctacccttgtggatgcacatgtcacgctgttccattgc
aatttcctgaaactacttgatgggggagaacatctgcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52142781_52143828
seq2: B6Ng01-077G09.b_47_1087

seq1  GAATTCTTTCCCATGAAGGTTTTTCTAAATTTCCTGAACCATTCTTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCATGAAGGTTTTTCTAAATTTCCTGAACCATTCTTATAA  50

seq1  AAAAACACTATAAACAAAAGCCCATTACGCACATCTCGGTGGAATTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACTATAAACAAAAGCCCATTACGCACATCTCGGTGGAATTTTGA  100

seq1  ACACAGTTGTAATATTTCATTCAGCCTGACATCCCTGAATGTTATTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTGTAATATTTCATTCAGCCTGACATCCCTGAATGTTATTATTT  150

seq1  ACAAATCTGAACAAACCAAGCACAATTATTTTTCTTAAGCAAAACATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTGAACAAACCAAGCACAATTATTTTTCTTAAGCAAAACATATC  200

seq1  CGATGGGAATACATCCAAATAGTTCAACTCTTGCAGTACATTGTCATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGGAATACATCCAAATAGTTCAACTCTTGCAGTACATTGTCATCTT  250

seq1  TACCAACGTGAAATAAAAATTCGTACTAGGATTTCCTTAGAGACAGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACGTGAAATAAAAATTCGTACTAGGATTTCCTTAGAGACAGAGCT  300

seq1  ATAAGTAAATCATCCTCTATAGAAAACCCAAGCACTGTCTTATTAGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAAATCATCCTCTATAGAAAACCCAAGCACTGTCTTATTAGTAAC  350

seq1  GTCTACTTATATTGCTTTGAATTTATGTCCTCTTATTTTCCAGTTGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTTATATTGCTTTGAATTTATGTCCTCTTATTTTCCAGTTGATAA  400

seq1  CAAAATCATACAGCCATACAATGACTTTGTTTATTTTTATTTTTTCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCATACAGCCATACAATGACTTTGTTTATTTTTATTTTTTCAAGT  450

seq1  TTGTTAAAGCGGGGCTATTGTGTTTAAGATATTCTTTGAGCTCCCCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAAGCGGGGCTATTGTGTTTAAGATATTCTTTGAGCTCCCCCTAT  500

seq1  TGATAGAATCTTAGTATGGTGTCAAGGCACATTTAGAACAAGCCACTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAATCTTAGTATGGTGTCAAGGCACATTTAGAACAAGCCACTGGC  550

seq1  TCAAACACTGTTTTGTGTGCTTAAGACACAGTTGACTGGTATGAAACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACACTGTTTTGTGTGCTTAAGACACAGTTGACTGGTATGAAACATG  600

seq1  TCGAGAAAGATGATCCATTCATTCGTCAGGGGTTTGATCAGTAGAAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGAAAGATGATCCATTCATTCGTCAGGGGTTTGATCAGTAGAAATGA  650

seq1  CCACAGAAAGGAAAGAGAGGAGAAGAATAGTTGGTATATAAGGTGGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAAAGGAAAGAGAGGAGAAGAATAGTTGGTATATAAGGTGGAGGT  700

seq1  GTTCATAAACTCACAGGGCGAATGATTGTAGTAATACACTTTAGGAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAAACTCACAGGGCGAATGATTGTAGTAATACACTTTAGGAAGGT  750

seq1  GGGAAGCAAAGATACCATGACCTTATTTTCAAGCTTCAAAGGTTGCTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCAAAGATACCATGACCTTATTTTCAAGCTTCAAAGGTTGCTATT  800

seq1  GCTTATCTATGAGCACCTGCAGCAAGTGGGCATACTCTACTGAGAATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCTATGAGCACCTGCAGCAAGTGGGCATACTCTACTGAGAATTCA  850

seq1  TGGAACAGTAGCTCCTGGTATATACTCTGGCGTTAACACTGCTAAATGGG  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGAACAGTAGCTCCTGGTATATACTCTGGCGTT-ACACTGCTAAATGGG  899

seq1  TAGCATACGTATTCAAGTCAACTTCACTCAAGTTTGCACCAGGCAGTTAA  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAGCATACGTA-TCAAGTCAACTTCACTCAAGTTTGCACCAGGCAGTTAA  948

seq1  TGAACCTTGATGGCCTGTACTGCTCATCCTTCTTGGATCCATCCCTTTGG  1000
      |||||| |||||| |||||||||||| ||||||| |||||||||||||||
seq2  TGAACC-TGATGGGCTGTACTGCTCAACCTTCTT-GATCCATCCCTTTGG  996

seq1  GATCTTCCAGTCTCTGGGAGGGTGGAGCCCCTCACCTCACACATGGCC  1048
      |||||| |||  ||||||| |||||| |||  | ||||||||||||||
seq2  GATCTT-CAG-ATCTGGGA-GGTGGAACCCTCCCCCTCACACATGGCC  1041

seq1: chr1_52162614_52163761
seq2: B6Ng01-077G09.g_68_1208 (reverse)

seq1  AACTGCAGTATGTCCTCCCCCATCAATGTTGGTCTAGGGAATTTGCAATG  50
      |||||||| |||| ||||||||||||   | || |  |||| ||||||||
seq2  AACTGCAG-ATGTTCTCCCCCATCAA--GTAGTTTCAGGAAATTGCAATG  47

seq1  AAACAAGCGTGACATGTGCAT-CACAAGGGTAGCAGCACGGTGCAGGCGC  99
       ||| |||||||||||||||| ||||||||||||||| ||||||||||| 
seq2  GAAC-AGCGTGACATGTGCATCCACAAGGGTAGCAGC-CGGTGCAGGCGG  95

seq1  GGAGAGAGCGTGGTTACCAGCAGGAACTCAAAAGCTGCCTTGCTCAGTGC  149
      |  |||||||| |||||||||| |||||||||||||  | ||||||||||
seq2  GAGGAGAGCGT-GTTACCAGCAAGAACTCAAAAGCTTGCCTGCTCAGTGC  144

seq1  ATGCTGCTGAGTGTGCAGATACTGAGAGCAAACACCTTAGCTTACTAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCTGAGTGTGCAGATACTGAGAGCAAACACCTTAGCTTACTAGAA  194

seq1  TGGCTTTAATGTGTTTACCACAAAACCAGAGGGTCAAAGACCCCTGTACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTAATGTGTTTACCACAAAACCAGAGGGTCAAAGACCCCTGTACT  244

seq1  TCTCCTCCTGGTGCAGCCATGAGTCACACCACTCCTTAGCTCTTTCCATA  299
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  TCTCCTCCTGG-GCAGCCATGAGTCACA-CACTCCTTAGCTCTTTCCATA  292

seq1  TTATCAAAGGACACAAATAGCCAGGGGTTACAAGTCTATTTTGGTAGTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAAGGACACAAATAGCCAGGGGTTACAAGTCTATTTTGGTAGTTA  342

seq1  ACTTAAGAAGTTCACAAGTTTTAACTTTTCTTGATTGTTGCATTGTTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGAAGTTCACAAGTTTTAACTTTTCTTGATTGTTGCATTGTTGTG  392

seq1  GCCTTTCCATTTAGAACATGAAGAACAATAGCATCACAGTGTTTTTTGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCCATTTAGAACATGAAGAACAATAGCATCACAGTGTTTTTTGCT  442

seq1  TTTTTTTTAGATCTGAGTCACAATCCAATATTTAGGTATATGTCATATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAGATCTGAGTCACAATCCAATATTTAGGTATATGTCATATAT  492

seq1  ACATTATAACGCACTAGAACATATATAACACATATAATACATTGTAACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATAACGCACTAGAACATATATAACACATATAATACATTGTAACAT  542

seq1  TATAATATATGTTACTTGGGATGTGTTCTATTTGTTTCCATCCCCCAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATATGTTACTTGGGATGTGTTCTATTTGTTTCCATCCCCCAATG  592

seq1  CTGTTAAAGGGTTCGACACCCCCAATTCACATAAGGTGAACATTCATCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAAGGGTTCGACACCCCCAATTCACATAAGGTGAACATTCATCAG  642

seq1  AATCCCTTGGAGGGGTCCAGATGCCCAGGAGAGTGACATCTGGCCACAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTTGGAGGGGTCCAGATGCCCAGGAGAGTGACATCTGGCCACAGG  692

seq1  TCCAATGGTATTCAGTTCTTCAAGACTCCAGAGATGGAAAGTCCAAGCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGGTATTCAGTTCTTCAAGACTCCAGAGATGGAAAGTCCAAGCCT  742

seq1  GCCTTGGATGGCTTAACCCAGGGCTGGCTAACTTTAACTCACCAAGCCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGATGGCTTAACCCAGGGCTGGCTAACTTTAACTCACCAAGCCAT  792

seq1  TTATACATAACTGAACTTTTGCTACATTTTGCATCCATTTTCATATTATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACATAACTGAACTTTTGCTACATTTTGCATCCATTTTCATATTATT  842

seq1  TTTAGTCTGATGAATTTTTTTAATTAGTGTGTGTGTGTGTGTTTGTGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTGATGAATTTTTTTAATTAGTGTGTGTGTGTGTGTTTGTGTCT  892

seq1  TGTGTTTTTTCTTGCCGAGCCACTTTGCCTGCCCTGTGAGTGGACTTCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTTCTTGCCGAGCCACTTTGCCTGCCCTGTGAGTGGACTTCTT  942

seq1  AACACAGTTTTTAATCTACTTAAATTATGCCTTTTATTTCGGGCTGATCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTTTTTAATCTACTTAAATTATGCCTTTTATTTCGGGCTGATCA  992

seq1  GCCCTAATTACTTTAATGAATCCTTAGTTAATTGGTAGAAAGATTACAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAATTACTTTAATGAATCCTTAGTTAATTGGTAGAAAGATTACAGA  1042

seq1  TTGTTTAGTAGACAAGAGTGTTTACTCTATCAAAACAGCAATTTATTTGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGTAGACAAGAGTGTTTACTCTATCAAAACAGCAATTTATTTGC  1092

seq1  AAGACGGTTTCCTTAACAATCATTTCCGTTTCCATTTTTAGATGAATTC  1148
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGGTTTCCTTAACAATCATTTCCGTTTCCATTTTTAGATGAATTC  1141