BAC Information

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BAC

Clone NameB6Ng01-077J20
Chromosome1 (Build37)
Map Location 46,278,330 - 46,279,503
singlet/doubletsinglet
Overlap geneDnahc7b
Upstream geneCol3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225
Downstream geneLOC666855, Slc39a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077J20.bB6Ng01-077J20.g
ACCDH893542DH893543
length1,1461,166
definitionDH893542|Mus musculus domesticus DNA, BAC clone: B6Ng01-077J20, 5' end.DH893543|Mus musculus domesticus DNA, BAC clone: B6Ng01-077J20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
ggaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgctccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttgtaatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gaatactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttagagctgagatga
aaggatggaccatgtagagagtgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacaatagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaaggagctaaagggatctgcaaccct
atagtggaacaacatatgactaccagtaccccgagctctgactctagctg
catatatatcaaagatggcctagtcgcatcactgaagagagtccatgact
gcacttaattgctcagtacaggaagcagcaaagggattggtggtca
gaattcagtggaaggcaagtgttagttagcagtgtgactcttcatcaata
tgtgtgacagggacaaataataagctacatataatttcacaaaaggtaat
gattttaataccagtacaatctatgggctgggttgaatttgaatttgatt
tttgatactagtgagacctattgcttgggtataaatggcaaaaagttgtg
ttttcctcagattctgcctcagtaaattaatgattctaagacaactagca
tacacccaaatacctttcagaatggttaaataatttaaccattaaattaa
gataactgaagaatcagaaacaaactgtcaaaaactggaggaatgtggaa
taattggaaactttggatggaagacagtctggcaatagcaccttccttcc
cctcctctagctgagatgtgggccatatctgtcatggcggccgccaccac
acagctaacagctggatggttccagacccactgtgggaagtccatcctct
tactacaaagtaaccatcagctggaaagtaattcagataagtaaccatca
agtctggctacagttttcaagaggcataatcctcaccctaaataaattat
tcttatatcaaaatgagtgggacagtgattcagtaacatcattatcacct
aacatatgcagcccaccagagacaaaactgctaagagctttctttctctt
ttttaaaaggtacatctttaaagagttttctaaaaataaaagacaataga
tcccaaattccttgcaatttaaacaacaaaatagttgagtatatttgtaa
attaagccaaccttaaacatgatcatacttaagaccccatgaacgcttta
accaaattcatttacatttctacagtactcacaatgatataaacactctt
tccagttcctgttggtcctacaaatattgaaggcttttgatgagtggtca
gtaaatgcattagagcagagtaacggattgtgtgagagttggcacaatga
tcctcaataaactgtacatctttgggaattggaggagtttctgccaattt
cctttattcatttatccatctttctagccctgtttacaggtaacacaaca
gacaaaggggtaaatatggtcaagctctgtacttctgtgcaattgggacg
cacctcagacaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_46278330_46279503
seq2: B6Ng01-077J20.g_70_1235 (reverse)

seq1  TTATTTGTCTTGATGT-CGTCTACAATTGCACAGAAGTACAGAGCTTTTG  49
      ||||||||| ||| || ||||  ||||||||||||||||||||||  |||
seq2  TTATTTGTC-TGAGGTGCGTC-CCAATTGCACAGAAGTACAGAGC--TTG  46

seq1  AACATATTTAACACCTTTGTCTGTTTGGTTGTTTACTGTAAACAGGGCTT  99
      | ||||||| || ||||||||||||    ||||  ||||||||||||| |
seq2  ACCATATTT-ACCCCTTTGTCTGTT---GTGTTACCTGTAAACAGGGC-T  91

seq1  AGGAAGATGGGATAAATGGATAAA-GAAATTGGCAGATACTCCTCCAATT  148
      || ||||| ||||||||| ||||| |||||||||||| ||||||||||||
seq2  AGAAAGAT-GGATAAATGAATAAAGGAAATTGGCAGAAACTCCTCCAATT  140

seq1  CCCAAAGATGTACAGTTTATTGA-GATCATTGTGCCAACTCTCGACACAA  197
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  CCCAAAGATGTACAGTTTATTGAGGATCATTGTGCCAACTCTC-ACACAA  189

seq1  TCCGTTACTCTGCTCTAATGCATTTACTGACCACTCATCAAAAGCCTTCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTACTCTGCTCTAATGCATTTACTGACCACTCATCAAAAGCCTTCA  239

seq1  ATATTTGTAGGACCAACAGGAACTGGAAAGAGTGTTTATATCATTGTGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTAGGACCAACAGGAACTGGAAAGAGTGTTTATATCATTGTGAG  289

seq1  TACTGTAGAAATGTAAATGAATTTGGTTAAAGCGTTCATGGGGTCTTAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGAAATGTAAATGAATTTGGTTAAAGCGTTCATGGGGTCTTAAG  339

seq1  TATGATCATGTTTAAGGTTGGCTTAATTTACAAATATACTCAACTATTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCATGTTTAAGGTTGGCTTAATTTACAAATATACTCAACTATTTT  389

seq1  GTTGTTTAAATTGCAAGGAATTTGGGATCTATTGTCTTTTATTTTTAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTAAATTGCAAGGAATTTGGGATCTATTGTCTTTTATTTTTAGAA  439

seq1  AACTCTTTAAAGATGTACCTTTTAAAAAAGAGAAAGAAAGCTCTTAGCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTAAAGATGTACCTTTTAAAAAAGAGAAAGAAAGCTCTTAGCAG  489

seq1  TTTTGTCTCTGGTGGGCTGCATATGTTAGGTGATAATGATGTTACTGAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTCTGGTGGGCTGCATATGTTAGGTGATAATGATGTTACTGAAT  539

seq1  CACTGTCCCACTCATTTTGATATAAGAATAATTTATTTAGGGTGAGGATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCCACTCATTTTGATATAAGAATAATTTATTTAGGGTGAGGATT  589

seq1  ATGCCTCTTGAAAACTGTAGCCAGACTTGATGGTTACTTATCTGAATTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTTGAAAACTGTAGCCAGACTTGATGGTTACTTATCTGAATTAC  639

seq1  TTTCCAGCTGATGGTTACTTTGTAGTAAGAGGATGGACTTCCCACAGTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCTGATGGTTACTTTGTAGTAAGAGGATGGACTTCCCACAGTGG  689

seq1  GTCTGGAACCATCCAGCTGTTAGCTGTGTGGTGGCGGCCGCCATGACAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAACCATCCAGCTGTTAGCTGTGTGGTGGCGGCCGCCATGACAGA  739

seq1  TATGGCCCACATCTCAGCTAGAGGAGGGGAAGGAAGGTGCTATTGCCAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCCACATCTCAGCTAGAGGAGGGGAAGGAAGGTGCTATTGCCAGA  789

seq1  CTGTCTTCCATCCAAAGTTTCCAATTATTCCACATTCCTCCAGTTTTTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCCATCCAAAGTTTCCAATTATTCCACATTCCTCCAGTTTTTGA  839

seq1  CAGTTTGTTTCTGATTCTTCAGTTATCTTAATTTAATGGTTAAATTATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTTTCTGATTCTTCAGTTATCTTAATTTAATGGTTAAATTATTT  889

seq1  AACCATTCTGAAAGGTATTTGGGTGTATGCTAGTTGTCTTAGAATCATTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTCTGAAAGGTATTTGGGTGTATGCTAGTTGTCTTAGAATCATTA  939

seq1  ATTTACTGAGGCAGAATCTGAGGAAAACACAACTTTTTGCCATTTATACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGAGGCAGAATCTGAGGAAAACACAACTTTTTGCCATTTATACC  989

seq1  CAAGCAATAGGTCTCACTAGTATCAAAAATCAAATTCAAATTCAACCCAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAATAGGTCTCACTAGTATCAAAAATCAAATTCAAATTCAACCCAG  1039

seq1  CCCATAGATTGTACTGGTATTAAAATCATTACCTTTTGTGAAATTATATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGATTGTACTGGTATTAAAATCATTACCTTTTGTGAAATTATATG  1089

seq1  TAGCTTATTATTTGTCCCTGTCACACATATTGATGAAGAGTCACACTGCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTATTATTTGTCCCTGTCACACATATTGATGAAGAGTCACACTGCT  1139

seq1  AACTAACACTTGCCTTCCACTGAATTC  1174
      |||||||||||||||||||||||||||
seq2  AACTAACACTTGCCTTCCACTGAATTC  1166