BAC Information

Click to search

BAC

Clone NameB6Ng01-077K13
Chromosome1 (Build37)
Map Location 88,926,856 - 89,050,463
singlet/doubletdoublet
Overlap gene4930429A22Rik, LOC208256, Akp5, Alpi, Akp3, Ecel1
Upstream gene2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, EG620213
Downstream gene1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077K13.bB6Ng01-077K13.g
ACCDH893574DH893575
length978963
definitionDH893574|Mus musculus domesticus DNA, BAC clone: B6Ng01-077K13, 5' end.DH893575|Mus musculus domesticus DNA, BAC clone: B6Ng01-077K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,926,856 - 88,927,838)(89,049,487 - 89,050,463)
sequence
gaattctcatcccaggtgagagaaggttatagttctgagccaagactacc
ctgggtgcaccatacagcaaagtgcctgttcatgcagacatgacatgttt
cccacagctgcctttgaggacacctcctagttctgcaccatcttcccctc
tctgagattctgtatgtttgtgttctacatctgccaactaagctaaactg
actcaactattagatgcattttcctaccccatcccatcctataccaccca
actgcacctcatttcccccatcccaccccatcccatcccactcctcctcc
ctcccgccaaatcccatcatgaagtgcctccttccctggagcctagcagg
ttgcccaccactttatgctaaatatgtgtcctctatcctttagtataacc
agactagtcaggtggtcaccatgttttgtgtaaggaatgccattcatcac
tgttctgctcatgaaacagaatgcccttttcactccctctgactttctca
gtgaattttccagtgctgatgtcatcaaacttgactcccaatttttaaca
accctcagtctcagaactaccagtcccctgctgagtacttcaagaggcgg
gtcttgcctctgcctgtgcaactcagtggaatgtgaatgcttttgactgt
gaggtagagagtgcatattaagaggctttgcagatttttctgtagattct
ggttcccagtacttagagcagacctgggacccagccaggggctgctgagg
agtttgtagcactgatgaagttctgaacagtccctccagcagagctagca
cactgcggatgctcagcagacaccgggtgcacgcctctcctcgcaagcat
ggattgcttcccctgcatccttaatctagcatgatgcctccgtttcttct
aaagcaccagcgcccgtctccttcacttactctagatgttctcatgtgga
ggttaaaattcccatctgaactctaaac
gaattccagaggtcccaactcccagtatagcgccccacggtgtccctaca
ggtggggaaagtgaaggcggttggggaaggagtgaaaggcgggttctcca
gggcatcttcaggctgaactaagagtaatggggtttggctaacttctctg
gattgagagaggggttggttttcatgatcccggagcttgtgacaacagat
ccgtatttgactcgtcctgtcttctcttctttgacatttgagagggaacg
ctggaaaactggccgtgcacttctgaccaggggtccctgttttcctcccc
agattgaccaggatgggctcaccctgccagagagaaccctgtacctagct
caagacgaggagagtgagaaggtgcctaggcagaggctggggcttctggg
aaggaaagagccccagaaggagggtcgcgggggtaggtgtctccctcccc
ataacaggagcacgtgtcctggtgcagatcttggctgcatacagggtgtt
catgcagcgtctactcagactactgggagcggacgctgtggagcagaagg
cgcaggaaatccttcagctggaacagaggctggccaatgtgagcaggagg
ggctgggagcctccaggaccctgacaaaggccggggaacataggtcaggc
ctgtgtctatctggtctccactccagatctctgtgtcagaatatgatgat
ctccgtcgtgatgtcagctccgcgtacaacaaagtgactctggggcagct
gcagaagatcatcccccatgtgagtgttctcagacctggtgaatgggtga
tgatgggggcggcgcaggactgcaagttgaccatctttagtatgaccgag
tcttccatgccctcaatgccgacgtgctttgttgtctcgtttggacccct
tgttgtctcctgtgcttccctgcctttggctccacgttgcatggagtgct
gctgatcaatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88926856_88927838
seq2: B6Ng01-077K13.b_44_1021

seq1  GAATTCTCATCCCAGGTGAGAGAAGGTTATAGTTCTGAGCCAAGACTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCCCAGGTGAGAGAAGGTTATAGTTCTGAGCCAAGACTACC  50

seq1  CTGGGTGCACCATACAGCAAAGTGCCTGTTCATGCAGACATGACATGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGCACCATACAGCAAAGTGCCTGTTCATGCAGACATGACATGTTT  100

seq1  CCCACAGCTGCCTTTGAGGACACCTCCTAGTTCTGCACCATCTTCCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCTGCCTTTGAGGACACCTCCTAGTTCTGCACCATCTTCCCCTC  150

seq1  TCTGAGATTCTGTATGTTTGTGTTCTACATCTGCCAACTAAGCTAAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATTCTGTATGTTTGTGTTCTACATCTGCCAACTAAGCTAAACTG  200

seq1  ACTCAACTATTAGATGCATTTTCCTACCCCATCCCATCCTATACCACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACTATTAGATGCATTTTCCTACCCCATCCCATCCTATACCACCCA  250

seq1  ACTGCACCTCATTTCCCCCATCCCACCCCATCCCATCCCACTCCTCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACCTCATTTCCCCCATCCCACCCCATCCCATCCCACTCCTCCTCC  300

seq1  CTCCCGCCAAATCCCATCATGAAGTGCCTCCTTCCCTGGAGCCTAGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGCCAAATCCCATCATGAAGTGCCTCCTTCCCTGGAGCCTAGCAGG  350

seq1  TTGCCCACCACTTTATGCTAAATATGTGTCCTCTATCCTTTAGTATAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCACCACTTTATGCTAAATATGTGTCCTCTATCCTTTAGTATAACC  400

seq1  AGACTAGTCAGGTGGTCACCATGTTTTGTGTAAGGAATGCCATTCATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGTCAGGTGGTCACCATGTTTTGTGTAAGGAATGCCATTCATCAC  450

seq1  TGTTCTGCTCATGAAACAGAATGCCCTTTTCACTCCCTCTGACTTTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGCTCATGAAACAGAATGCCCTTTTCACTCCCTCTGACTTTCTCA  500

seq1  GTGAATTTTCCAGTGCTGATGTCATCAAACTTGACTCCCAATTTTTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTTTCCAGTGCTGATGTCATCAAACTTGACTCCCAATTTTTAACA  550

seq1  ACCCTCAGTCTCAGAACTACCAGTCCCCTGCTGAGTACTTCAAGAGGCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGTCTCAGAACTACCAGTCCCCTGCTGAGTACTTCAAGAGGCGG  600

seq1  GTCTTGCCTCTGCCTGTGCAACTCAGTGGAATGTGAATGCTTTTGACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCCTCTGCCTGTGCAACTCAGTGGAATGTGAATGCTTTTGACTGT  650

seq1  GAGGTAGAGAGTGCATATTAAGAGGCTTTGCAGA-TTTTCTGTAGATTCT  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGGTAGAGAGTGCATATTAAGAGGCTTTGCAGATTTTTCTGTAGATTCT  700

seq1  GGTTCCCAGTACTTAGAGCAGACCTGGGACCCAGCCAGGGGCTGCTGAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCAGTACTTAGAGCAGACCTGGGACCCAGCCAGGGGCTGCTGAGG  750

seq1  AGTTTGTAGCACTGATGAAGTTCTGAACAGTCCCTCCAGCAGAGCTAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTAGCACTGATGAAGTTCTGAACAGTCCCTCCAGCAGAGCTAGCA  800

seq1  CACTGCGGATGCTCAGCAGACACCGGGTGCACGCCTCTCCTCGCAAGCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCGGATGCTCAGCAGACACCGGGTGCACGCCTCTCCTCGCAAGCAT  850

seq1  GGATTGCTTCCCCTGCATCCTTAATCTTAGCATGATGCCTCCGTTTCTTC  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGATTGCTTCCCCTGCATCCTTAATC-TAGCATGATGCCTCCGTTTCTTC  899

seq1  TAAAGCACCAGGCGCCCGTCTCCTTCACTTACTCTAGATGGTTCTCATGG  949
      |||||||||| |||||||||||||||||||||||||||| |||||||| |
seq2  TAAAGCACCA-GCGCCCGTCTCCTTCACTTACTCTAGAT-GTTCTCAT-G  946

seq1  TGGAGGTTAAGAATTCCCCATCTGAACTCTAAAC  983
      |||||||||| |||| ||||||||||||||||||
seq2  TGGAGGTTAA-AATT-CCCATCTGAACTCTAAAC  978

seq1: chr1_89049487_89050463
seq2: B6Ng01-077K13.g_68_1030 (reverse)

seq1  AAGATCTGATCCAGCAGCCACTTCCACTGCAACTGTGGAGCCAAGGGCAG  50
      ||||| |||| |||||| ||| |||| |||||| |||||||||| |||||
seq2  AAGAT-TGAT-CAGCAG-CAC-TCCA-TGCAAC-GTGGAGCCAAAGGCAG  44

seq1  GGAAGCAACAGGAGACAACAAAGGGGTCCAAAAGGAGACAACAAAGGCAC  100
      |||||| |||||||||||| ||||||||| ||| ||||||||||| ||||
seq2  GGAAGC-ACAGGAGACAAC-AAGGGGTCC-AAACGAGACAACAAA-GCAC  90

seq1  GTCGGCATTGAGGGGCATGGAAGACCTCGGTCATACCTAAAGATGGTCAA  150
      ||||||||||| |||||||||||| |||||||||| ||||||||||||||
seq2  GTCGGCATTGA-GGGCATGGAAGA-CTCGGTCATA-CTAAAGATGGTCAA  137

seq1  CTTGCAGTCCCTGCGCCGCCCCCATCATCACCCATTCACCAGGTCTGAGA  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGT-CCTGCGCCGCCCCCATCATCACCCATTCACCAGGTCTGAGA  186

seq1  ACACTCACATGGGGGATGATCTTCTGCAGCTGCCCCAGAGTCACTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACATGGGGGATGATCTTCTGCAGCTGCCCCAGAGTCACTTTGTT  236

seq1  GTACGCGGAGCTGACATCACGACGGAGATCATCATATTCTGACACAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGCGGAGCTGACATCACGACGGAGATCATCATATTCTGACACAGAGA  286

seq1  TCTGGAGTGGAGACCAGATAGACACAGGCCTGACCTATGTTCCCCGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTGGAGACCAGATAGACACAGGCCTGACCTATGTTCCCCGGCCT  336

seq1  TTGTCAGGGTCCTGGAGGCTCCCAGCCCCTCCTGCTCACATTGGCCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGGGTCCTGGAGGCTCCCAGCCCCTCCTGCTCACATTGGCCAGCC  386

seq1  TCTGTTCCAGCTGAAGGATTTCCTGCGCCTTCTGCTCCACAGCGTCCGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCAGCTGAAGGATTTCCTGCGCCTTCTGCTCCACAGCGTCCGCT  436

seq1  CCCAGTAGTCTGAGTAGACGCTGCATGAACACCCTGTATGCAGCCAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAGTCTGAGTAGACGCTGCATGAACACCCTGTATGCAGCCAAGAT  486

seq1  CTGCACCAGGACACGTGCTCCTGTTATGGGGAGGGAGACACCTACCCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCAGGACACGTGCTCCTGTTATGGGGAGGGAGACACCTACCCCCG  536

seq1  CGACCCTCCTTCTGGGGCTCTTTCCTTCCCAGAAGCCCCAGCCTCTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCCTCCTTCTGGGGCTCTTTCCTTCCCAGAAGCCCCAGCCTCTGCCT  586

seq1  AGGCACCTTCTCACTCTCCTCGTCTTGAGCTAGGTACAGGGTTCTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCTTCTCACTCTCCTCGTCTTGAGCTAGGTACAGGGTTCTCTCTG  636

seq1  GCAGGGTGAGCCCATCCTGGTCAATCTGGGGAGGAAAACAGGGACCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTGAGCCCATCCTGGTCAATCTGGGGAGGAAAACAGGGACCCCTG  686

seq1  GTCAGAAGTGCACGGCCAGTTTTCCAGCGTTCCCTCTCAAATGTCAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAGTGCACGGCCAGTTTTCCAGCGTTCCCTCTCAAATGTCAAAGA  736

seq1  AGAGAAGACAGGACGAGTCAAATACGGATCTGTTGTCACAAGCTCCGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGACAGGACGAGTCAAATACGGATCTGTTGTCACAAGCTCCGGGA  786

seq1  TCATGAAAACCAACCCCTCTCTCAATCCAGAGAAGTTAGCCAAACCCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAAACCAACCCCTCTCTCAATCCAGAGAAGTTAGCCAAACCCCAT  836

seq1  TACTCTTAGTTCAGCCTGAAGATGCCCTGGAGAACCCGCCTTTCACTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTAGTTCAGCCTGAAGATGCCCTGGAGAACCCGCCTTTCACTCCT  886

seq1  TCCCCAACCGCCTTCACTTTCCCCACCTGTAGGGACACCGTGGGGCGCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAACCGCCTTCACTTTCCCCACCTGTAGGGACACCGTGGGGCGCTA  936

seq1  TACTGGGAGTTGGGACCTCTGGAATTC  977
      |||||||||||||||||||||||||||
seq2  TACTGGGAGTTGGGACCTCTGGAATTC  963