BAC Information

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BAC

Clone NameB6Ng01-077L14
Chromosome1 (Build37)12 (Build37)
Map Location 50,831,862 - 50,832,37857,041,185 - 57,041,949
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077L14.bB6Ng01-077L14.g
ACCDH893624DH893625
length1,0141,081
definitionDH893624|Mus musculus domesticus DNA, BAC clone: B6Ng01-077L14, 5' end.DH893625|Mus musculus domesticus DNA, BAC clone: B6Ng01-077L14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,831,862 - 50,832,378)(57,041,185 - 57,041,949)
sequence
gaattccttaatccacttagatttgaccttagtacaaggagataggaatg
gatcaatttgcattcttctacattataaccaccagttgtgccagcaccat
ttgttgaaaatgctgtattttttccactggttggatttagctcccttgtc
aaagatcaagtgaccataggtgtgtgggttcatttctgtttcttcaattc
tggtccattggtctacttgtctgtcactataccagtaccatgcagttttt
atcacaattgctcttgtagtaaagctttaggtcaggcatggtgattccac
cagaggttcttttatccttgagaagagtttttgctatcctaggttttttg
ttattccagatgaatttgcagattgctctttctaattcattgaagaattg
agttggaattttgatggggattgcattgaatctgtagattgcttttggca
agatagccatttttacaatgttgatcctgccaatccatgagcatgggaga
tctttccatcttctgagatcttctttaatttctttcttcaaagacttgaa
ttttttatcatacagatctttcactttcttagttagagtcacgccaagat
attttatattatttgtgactatacaagggtgttgtttccccaatttcttt
ctcagcctgtttattctttgtgtagagaaaggccattgacttgttttagt
taattttatatccagctacttcaccgaagctgtttatcaggtttaggagt
tctctggtggaatttttagggtcacttatatatactatcatatcatctgc
aaaaagtgatattttgacttcttcttttccaatttgtatccccttaatct
ccttttgttgtctaattgctctggctaggacttcaaatactatgttgaaa
aggtagggagaaaatgggcagccttgtctagtccctgattttagtgggat
tgcttccagcttctccccatttactttgatgtggctactggtttgctgta
gattgcttttgtca
gaattcaccctaggggcaaggggtgtgagacaaagagacagctcagtgaa
taaaaatactggctgtttttccagaggaccagaatttgattcccagcccc
catacggtggcttacaccaactataaaatcagttctcagggctccaaaga
ccttttctgacctctcaggcaccaagaacacaagtggtacacaaacacac
atgcaggcaatcactcatacaaacaaaataaaaatatttttaaagtgagt
atttctctaaactaaatacaacaagaaataaataccaagacaacattggg
gggggtgtacatggtggggggggggcgtgagttctgagttctgagttctt
ggttctgagttctcatcctgctggcttcatggttaaaaaaaaaaaccttt
ttaaaaaatgcttatttctgggggtggcacagggaatggaatatgtagtg
taaaaataaattaattaaaaagtaataataaaaatgcttatttcctaaat
attcagagataaattaaattattatctgaatttctgactctcagagtaag
tagattgttacgggctgaacagtgttcgctcagaattcgtacatcaaagc
tctaacctccagtgttactgtgcttggacatacggtccacatgaagttct
atggttaaacatcacgatctgaaatgatctgtgtcctgagaagaagagtg
tttgtttctgttagtgtgttagctgatagtagctgcccaggtaccagggt
tgaggaacacatgttaaaggttagagacagaataccagcataggttaggg
cttgtgtgagccctccatcagatcatgagcatcacagaccctggaaagaa
ttgtcctgacctgtgggcacccctcacccacaccgtctgatgcagactgg
acttctgtgtttctggggggagcttcgtgcacggagaggtgccactaccc
acacactagaaagtggacccttgctaaagctgaccagctggttctcttct
caaacttcccgaggataagtaatttgcgtgttttatggcgtctgagctga
ctatacctggaaaaaaaatattatgtgtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50831862_50832378
seq2: B6Ng01-077L14.b_52_569 (reverse)

seq1  ACATCTCAGAAGATGGAAAGATCTCCCATGAACATGGATTGGCAGGATCA  50
      | ||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  AGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCA  50

seq1  ATATAGTAATAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCA  100
      | || |||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCA  100

seq1  ATCCCCATCAAAATTCCAACTCAATTCTTCAACAAATTAGAAAGAGCAAT  150
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  ATCCCCATCAAAATTCCAACTCAATTCTTCAATGAATTAGAAAGAGCAAT  150

seq1  CTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTC  200

seq1  TCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCGGACCTAAAACTG  250
      ||||||||||||||||||||||||||||||||||||| |||||||| || 
seq2  TCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTT  250

seq1  TACTAC-AGAGCAATTGTGATAAAAACTGCATGGTGCTGGTATAGAGACA  299
      |||||| |||||||||||||||||||||||||||| ||||||||| ||||
seq2  TACTACAAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACA  300

seq1  TACAAGTAGACCAATGGAATAAAATTGAAGACCCAGAAATGAACCCACAC  349
       |||||||||||||||||  | |||||||||  |||||||||||||||||
seq2  GACAAGTAGACCAATGGACCAGAATTGAAGAAACAGAAATGAACCCACAC  350

seq1  ATCTATGGTCACTTAATTTTTGACAGGGGAGCTAAAGCCATTCAGTGGAA  399
      | |||||||||||| || ||||||| |||||||||| |||  ||||||||
seq2  ACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAATCCAACCAGTGGAA  400

seq1  AAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTTATCAT  449
      |||| ||||||||||||||||||||||||||||||||||| |||||| ||
seq2  AAAATACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTGGTTATAAT  450

seq1  GCAGAAGAATGTGAAATGATTCATTCCTATCTCCTTGTAGTAATGCCAAA  499
      | |||||||||  || |||| |||||||||||||||||| ||| | ||||
seq2  GTAGAAGAATGCAAATTGATCCATTCCTATCTCCTTGTACTAAGGTCAAA  500

seq1  TCTAAGTGGATTAAGGAA  517
      ||||||||||||||||||
seq2  TCTAAGTGGATTAAGGAA  518

seq1: chr12_57041185_57041949
seq2: B6Ng01-077L14.g_391_1146

seq1  CGTGAGTTCTGAGTTCTGAGTTCTTGGTTCTGAGTTCTCATCCTGCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGTTCTGAGTTCTGAGTTCTTGGTTCTGAGTTCTCATCCTGCTGGC  50

seq1  TTCATGGTTAAAAAAAAAAACCTTTTTAAAAAATGCTTATTTCTGGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTTAAAAAAAAAAACCTTTTTAAAAAATGCTTATTTCTGGGGGT  100

seq1  GGCACAGGGAATGGAATATGTAGTGTAAAAATAAATTAATTAAAAAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGGAATGGAATATGTAGTGTAAAAATAAATTAATTAAAAAGTAA  150

seq1  TAATAAAAATGCTTATTTCCTAAATATTCAGAGATAAATTAAATTATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAATGCTTATTTCCTAAATATTCAGAGATAAATTAAATTATTAT  200

seq1  CTGAATTTCTGACTCTCAGAGTAAGTAGATTGTTACGGGCTGAACAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTCTGACTCTCAGAGTAAGTAGATTGTTACGGGCTGAACAGTGT  250

seq1  TCGCTCAGAATTCGTACATCAAAGCTCTAACCTCCAGTGTTACTGTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCAGAATTCGTACATCAAAGCTCTAACCTCCAGTGTTACTGTGCTT  300

seq1  GGACATACGGTCCACATGAAGTTCTATGGTTAAACATCACGATCTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATACGGTCCACATGAAGTTCTATGGTTAAACATCACGATCTGAAAT  350

seq1  GATCTGTGTCCTGAGAAGAAGAGTGTTTGTTTCTGTTAGTGTGTTAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTGTCCTGAGAAGAAGAGTGTTTGTTTCTGTTAGTGTGTTAGCTG  400

seq1  ATAGTAGCTGCCCAGGTACCAGGGTTGAGGAACACATG-TAAAGGTTAGA  449
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATAGTAGCTGCCCAGGTACCAGGGTTGAGGAACACATGTTAAAGGTTAGA  450

seq1  GACAGAATACCAGCATAGGTTAGGGCTTGTGTGAGCCCTCCATCAGATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATACCAGCATAGGTTAGGGCTTGTGTGAGCCCTCCATCAGATCA  500

seq1  TGAGCATCACAGACCCTGGAAAGAATTGTTCCTGAACCTGTGGGCACCCC  549
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  TGAGCATCACAGACCCTGGAAAGAATTG-TCCTG-ACCTGTGGGCACCCC  548

seq1  TCACCCACACCGTCTGATGCAGACTGGACTTCTGTGTTTACTGGGGGGAG  599
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCACCCACACCGTCTGATGCAGACTGGACTTCTGTGTTT-CTGGGGGGAG  597

seq1  CTCCGTGCACGGAGGAGGTGGCCACTACCCACACACTAGAGAGTGGACCC  649
      || |||||||||| ||||| |||||||||||||||||||| |||||||||
seq2  CTTCGTGCACGGA-GAGGT-GCCACTACCCACACACTAGAAAGTGGACCC  645

seq1  TTGCTAGAGGCTGACCAAGCTGGTTCCTCTTCTCAGACTTCCCGAGGAAA  699
      |||||| | ||||||| |||||||| ||||||||| |||||||||||| |
seq2  TTGCTA-AAGCTGACC-AGCTGGTT-CTCTTCTCAAACTTCCCGAGGATA  692

seq1  AGT-ATTTGCGTTGTTTTTATGGCGGCCTGAGCTGACTAATACTGGAATA  748
      ||| ||||||||   ||||||||| | ||||||||||||   |||||| |
seq2  AGTAATTTGCGT--GTTTTATGGC-GTCTGAGCTGACTATACCTGGAAAA  739

seq1  AAAATATTTAGTGTGAC  765
      ||||||||  |||||||
seq2  AAAATATTATGTGTGAC  756