BAC Information

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BAC

Clone NameB6Ng01-077M08
Chromosome1 (Build37)
Map Location 61,259,129 - 61,321,916
singlet/doubletdoublet
Overlap genenone
Upstream geneNbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream genePard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077M08.bB6Ng01-077M08.g
ACCDH893658DH893659
length1,1611,122
definitionDH893658|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M08, 5' end.DH893659|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,320,748 - 61,321,916)(61,259,129 - 61,260,273)
sequence
gaattccatttttcagaattttattttagtttcagttgaatatttaaaca
ggtttaaaatttaaatatctgtgctgaacaagtctggatatatatttttt
aaattgctgtaatacttcactgagtttcatttttaacccaatacaatatg
cataatccattatgttagcattacataagttaggtatgctcagacactgg
gctcgggtacccatttacacagttaaatcacacaactgcaacagactgtc
ttatcaaattattattataacagctttgttactaaccaagcataaagagg
gttctaaaattcaactcagggctcattatagtaggaaaacccattctgat
taatgaaacttttatttaaggttttccttaaatgaaattattatattcta
gtctgttaacatgatcagaaagaaaaagctaggtctcctttggggagaat
catatttctatgcctattggttttgtagattctggttgttaccccggttt
ttcttaggatcactttggctcttggaggcgaacagatatttgagtgttct
aggcatataggggaggggggataagtaattgcacacaaacagcacccagt
tcttagggagttttgttcaatgagaacccaaaaggggatctgaagaggag
tacaattttcttcatggcttaggctccctgggcttggaacagtgttctat
gactttgggcaaagttcttgtgaaccttggatgcttgttttatgacgttg
gccttgccatttcaccgcagatttagttttccattctttctaatggaggt
aacaactgaaactatcttacctaaacactaatattaaacaatattaacgc
ccttaaccttgtgtgtggaaagacctcagttagaatctcctgagaacaga
acccacagctcaagatagtatatagccagaatgctctgagctgaacgcaa
agtgtggatatgaagttggaggtaagctctcatagcagagagataggacc
cctttgccctggcattgagggacagctccagcaacttcttccattgtctg
cagctggtctagggcagtctttcagtctgtccagaggttaaattggccct
atatagaatgggagtgtaatggaaacagctgggacttttattccttctga
tattttactta
gaattcactgtgataaatgtcagctgggggttctacctagcacactgcct
gtctggggatagaaagcacagcagctgggacctacgcaggagccaggctt
cctcgagctctgaggaaggttgtttcttacaccaaaccttgatatttcaa
ctccactttgtagagacgggaaatgtggcacagctatgaactgacttgtt
cagatcctctagcctctgccaggctcagtcaagagtctacccagtatggg
tgtaccgtgctcttctcccaggggaatttacagtattcccaggacttatc
cttctcttggaccttagctttacaaaggcagccgagaaggaagatctgag
gaccgaaggtctaacatgtggagaaaggttagcataattccaatgaggaa
attcttctccaaaaagcaaattaaatgagttttttgcaccagaatatttg
gaggcctacaactatatgcagcgtgttgttgttgttgatgttttgttttt
aaacacactcacatctaggaaagcaacaagctctcacaggcaaggcacat
ctgtaaccccaaggacagaagacttccatggtgttgactgtcatttgttt
ccaagtggcatctcatacacagaattttataattcagaaacgtttgcaat
ggcctacacatttttttttttgccttccttttagaaaatcattaagtaaa
tcaagtaatttaaaaccccaagaagtcccacagtgaagcaacctgtttag
atgtatcggatccaaaattttccatacttatttagacccagagcatcttt
ctcacatgagttctatttacatctcacacactcgagaaaatgttggacca
ggtttaggctaacttgggcagcaattctcagtctctcctaagagcagagc
caaagcaccattagctcatgggttcccagaagttcagtgtgaggcgcgag
ctctgtggtcctgctcgctctccgtcatgtctccctcgtgagataaaaca
gtgcgtgcgtgaaacatgccgatcaccaccaacggcgattctcacattct
gacctcatttcttacgcctttgaactctgagccaaagcagctgcttacat
gtcaagaagtccttcttacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61320748_61321916
seq2: B6Ng01-077M08.b_46_1206 (reverse)

seq1  TAAGTTTAAATATCATGAAGGAATAAAGAGTCACAGCTGTTTCATTTACA  50
      |||| | |||||||| ||||||||||| |||| ||||||||||  |||||
seq2  TAAG-TAAAATATCA-GAAGGAATAAA-AGTCCCAGCTGTTTCCATTACA  47

seq1  CTCCC-TTCTTTATATGTGCCAATTTTAACCTTCCTGGACTGACTGAAAG  99
      ||||| |||| |||| | ||||| ||||||||  |||||| |||||||||
seq2  CTCCCATTCTATATA-GGGCCAA-TTTAACCT--CTGGACAGACTGAAAG  93

seq1  ACTGCCCTAGACTCAGCTGCAGACAATGGAAGAAGTTGCTGGAGCTTGTC  149
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  ACTGCCCTAGAC-CAGCTGCAGACAATGGAAGAAGTTGCTGGAGC-TGTC  141

seq1  CCTCAATGCCAGGGC-AAGGGGTCTTATCTCTCTGCTATTGAGAGCTTAC  198
      ||||||||||||||| |||||||| ||||||||||||| |||||||||||
seq2  CCTCAATGCCAGGGCAAAGGGGTCCTATCTCTCTGCTA-TGAGAGCTTAC  190

seq1  CTCCAACTTCATATCCACACTTTGCGTTCAGCTCAGAGCATTCTGGCTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACTTCATATCCACACTTTGCGTTCAGCTCAGAGCATTCTGGCTAT  240

seq1  ATACTATCTTGAGCTGTGGGTTCTGTTCTCAGGAGATTCTAACTGAGGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATCTTGAGCTGTGGGTTCTGTTCTCAGGAGATTCTAACTGAGGTC  290

seq1  TTTCCACACACAAGGTTAAGGGCGTTAATATTGTTTAATATTAGTGTTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACACACAAGGTTAAGGGCGTTAATATTGTTTAATATTAGTGTTTA  340

seq1  GGTAAGATAGTTTCAGTTGTTACCTCCATTAGAAAGAATGGAAAACTAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGATAGTTTCAGTTGTTACCTCCATTAGAAAGAATGGAAAACTAAA  390

seq1  TCTGCGGTGAAATGGCAAGGCCAACGTCATAAAACAAGCATCCAAGGTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGGTGAAATGGCAAGGCCAACGTCATAAAACAAGCATCCAAGGTTC  440

seq1  ACAAGAACTTTGCCCAAAGTCATAGAACACTGTTCCAAGCCCAGGGAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAACTTTGCCCAAAGTCATAGAACACTGTTCCAAGCCCAGGGAGCC  490

seq1  TAAGCCATGAAGAAAATTGTACTCCTCTTCAGATCCCCTTTTGGGTTCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCATGAAGAAAATTGTACTCCTCTTCAGATCCCCTTTTGGGTTCTC  540

seq1  ATTGAACAAAACTCCCTAAGAACTGGGTGCTGTTTGTGTGCAATTACTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACAAAACTCCCTAAGAACTGGGTGCTGTTTGTGTGCAATTACTTA  590

seq1  TCCCCCCTCCCCTATATGCCTAGAACACTCAAATATCTGTTCGCCTCCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTCCCCTATATGCCTAGAACACTCAAATATCTGTTCGCCTCCAA  640

seq1  GAGCCAAAGTGATCCTAAGAAAAACCGGGGTAACAACCAGAATCTACAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAAGTGATCCTAAGAAAAACCGGGGTAACAACCAGAATCTACAAA  690

seq1  ACCAATAGGCATAGAAATATGATTCTCCCCAAAGGAGACCTAGCTTTTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATAGGCATAGAAATATGATTCTCCCCAAAGGAGACCTAGCTTTTTC  740

seq1  TTTCTGATCATGTTAACAGACTAGAATATAATAATTTCATTTAAGGAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATCATGTTAACAGACTAGAATATAATAATTTCATTTAAGGAAAA  790

seq1  CCTTAAATAAAAGTTTCATTAATCAGAATGGGTTTTCCTACTATAATGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATAAAAGTTTCATTAATCAGAATGGGTTTTCCTACTATAATGAG  840

seq1  CCCTGAGTTGAATTTTAGAACCCTCTTTATGCTTGGTTAGTAACAAAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTTGAATTTTAGAACCCTCTTTATGCTTGGTTAGTAACAAAGCT  890

seq1  GTTATAATAATAATTTGATAAGACAGTCTGTTGCAGTTGTGTGATTTAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAATAATAATTTGATAAGACAGTCTGTTGCAGTTGTGTGATTTAAC  940

seq1  TGTGTAAATGGGTACCCGAGCCCAGTGTCTGAGCATACCTAACTTATGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAATGGGTACCCGAGCCCAGTGTCTGAGCATACCTAACTTATGTA  990

seq1  ATGCTAACATAATGGATTATGCATATTGTATTGGGTTAAAAATGAAACTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAACATAATGGATTATGCATATTGTATTGGGTTAAAAATGAAACTC  1040

seq1  AGTGAAGTATTACAGCAATTTAAAAAATATATATCCAGACTTGTTCAGCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGTATTACAGCAATTTAAAAAATATATATCCAGACTTGTTCAGCA  1090

seq1  CAGATATTTAAATTTTAAACCTGTTTAAATATTCAACTGAAACTAAAATA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTTAAATTTTAAACCTGTTTAAATATTCAACTGAAACTAAAATA  1140

seq1  AAATTCTGAAAAATGGAATTC  1169
      |||||||||||||||||||||
seq2  AAATTCTGAAAAATGGAATTC  1161

seq1: chr1_61259129_61260273
seq2: B6Ng01-077M08.g_68_1189

seq1  GAATTCACTGTGATAAATGTCAGCTGGGGGTTCTACCTAGCACACTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGATAAATGTCAGCTGGGGGTTCTACCTAGCACACTGCCT  50

seq1  GTCTGGGGATAGAAAGCACAGCAGCTGGGACCTACGCAGGAGCCAGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGGATAGAAAGCACAGCAGCTGGGACCTACGCAGGAGCCAGGCTT  100

seq1  CCTCGAGCTCTGAGGAAGGTTGTTTCTTACACCAAACCTTGATATTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAGCTCTGAGGAAGGTTGTTTCTTACACCAAACCTTGATATTTCAA  150

seq1  CTCCACTTTGTAGAGACGGGAAATGTGGCACAGCTATGAACTGACTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTTGTAGAGACGGGAAATGTGGCACAGCTATGAACTGACTTGTT  200

seq1  CAGATCCTCTAGCCTCTGCCAGGCTCAGTCAAGAGTCTACCCAGTATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTCTAGCCTCTGCCAGGCTCAGTCAAGAGTCTACCCAGTATGGG  250

seq1  TGTACCGTGCTCTTCTCCCAGGGGAATTTACAGTATTCCCAGGACTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCGTGCTCTTCTCCCAGGGGAATTTACAGTATTCCCAGGACTTATC  300

seq1  CTTCTCTTGGACCTTAGCTTTACAAAGGCAGCCGAGAAGGAAGATCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTGGACCTTAGCTTTACAAAGGCAGCCGAGAAGGAAGATCTGAG  350

seq1  GACCGAAGGTCTAACATGTGGAGAAAGGTTAGCATAATTCCAATGAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGAAGGTCTAACATGTGGAGAAAGGTTAGCATAATTCCAATGAGGAA  400

seq1  ATTCTTCTCCAAAAAGCAAATTAAATGAGTTTTTTGCACCAGAATATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTCCAAAAAGCAAATTAAATGAGTTTTTTGCACCAGAATATTTG  450

seq1  GAGGCCTACAACTATATGCAGCGTGTTGTTGTTGTTGATGTTTTGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTACAACTATATGCAGCGTGTTGTTGTTGTTGATGTTTTGTTTTT  500

seq1  AAACACACTCACATCTAGGAAAGCAACAAGCTCTCACAGGCAAGGCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACTCACATCTAGGAAAGCAACAAGCTCTCACAGGCAAGGCACAT  550

seq1  CTGTAACCCCAAGGACAGAAGACTTCCATGGTGTTGACTGTCATTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACCCCAAGGACAGAAGACTTCCATGGTGTTGACTGTCATTTGTTT  600

seq1  CCAAGTGGCATCTCATACACAGAATTTTATAATTCAGAAACGTTTGCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGGCATCTCATACACAGAATTTTATAATTCAGAAACGTTTGCAAT  650

seq1  GGCCTACACATTTTTTTTTTTGCCTTCCTTTTAGAAAATCATTAAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACACATTTTTTTTTTTGCCTTCCTTTTAGAAAATCATTAAGTAAA  700

seq1  TCAAGTAATTTAAAACCCCAAGAAGTCCCACAGTGAAGCAACCTGTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAATTTAAAACCCCAAGAAGTCCCACAGTGAAGCAACCTGTTTAG  750

seq1  ATGTATCGGATCCAAAATTTTCCATACTTATTTAGACCCAGAGCATCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCGGATCCAAAATTTTCCATACTTATTTAGACCCAGAGCATCTTT  800

seq1  CTCACATGAGTTCTATTTACATCTCACACACTCGAGAAAATGTTGGACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGAGTTCTATTTACATCTCACACACTCGAGAAAATGTTGGACCA  850

seq1  GGTTTAGGCTAACTTGGGCAGCAATTCTCAGGTCTCTCCTAAGAGCAGGA  900
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  GGTTTAGGCTAACTTGGGCAGCAATTCTCA-GTCTCTCCTAAGAGCA-GA  898

seq1  GCCAAAGCACCATTAGCTCATGGGTTCCCAGAAGTTCAGTGTGGAGGCGC  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCCAAAGCACCATTAGCTCATGGGTTCCCAGAAGTTCAGTGT-GAGGCGC  947

seq1  GAGGCTCTGGTGGTCCTGCTCGCTCTCCGTCATGTCTCACTCGTGAGATA  1000
      || ||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  GA-GCTCT-GTGGTCCTGCTCGCTCTCCGTCATGTCTCCCTCGTGAGATA  995

seq1  AAACAGTGCGGTGCGGTGAAACATGCCGATCACCACCAAACGGGCGAATT  1050
      ||||||||| |||| ||||||||||||||||||||||||   |||| |||
seq2  AAACAGTGC-GTGC-GTGAAACATGCCGATCACCACCAA--CGGCG-ATT  1040

seq1  CTCACATTCTGA-CTCATTTCCTTTACGCTTTTGAAAACTCTGGAGGCCA  1099
      |||||||||||| ||||||||  |||||| ||||  |||||||   ||||
seq2  CTCACATTCTGACCTCATTTC--TTACGCCTTTG--AACTCTG--AGCCA  1084

seq1  AAGGCAGGCGTGCTTACAATGCAGAGGAAGGTTCCTTCTTTACTTT  1145
      || ||||   ||||||||   |  | ||||  |||||| |||||||
seq2  AA-GCAG--CTGCTTACATGTC--AAGAAG--TCCTTC-TTACTTT  1122